Biomedical Engineering and Bioengineering Commons^™

Automated Segmentation Of Left And Right Ventricles In Mri And Classification Of The Myocarfium Abnormalities, Cyrus (Mohammad Saleh) Nambakhsh

Electronic Thesis and Dissertation Repository

A fundamental step in diagnosis of cardiovascular diseases, automated left and right ventricle (LV and RV) segmentation in cardiac magnetic resonance images (MRI) is still acknowledged to be a difficult problem. Although algorithms for LV segmentation do exist, they require either extensive training or intensive user inputs. RV segmentation in MRI has yet to be solved and is still acknowledged a completely unsolved problem because its shape is not symmetric and circular, its deformations are complex and varies extensively over the cardiac phases, and it includes papillary muscles. In this thesis, I investigate fast detection of the LV endo- and …

Ex Vivo Diffusion Tensor Imaging Of Spinal Cord Injury In Rats Of Varying Degrees Of Severity, Michael Jirjis, Shekar N. Kurpad, Brian D. Schmit

Biomedical Engineering Faculty Research and Publications

The aim of this study was to characterize magnetic resonance diffusion tensor imaging (DTI) in proximal regions of the spinal cord following a thoracic spinal cord injury (SCI). Sprague–Dawley rats (n = 40) were administered a control, mild, moderate, or severe contusion injury at the T8 vertebral level. Six direction diffusion weighted images (DWIs) were collected ex vivo along the length of the spinal cord, with an echo/repetition time of 31.6 ms/14 sec and b = 500 sec/mm2. Diffusion metrics were correlated to hindlimb motor function. Significant differences were found for whole cord region of interest (ROI) drawings for fractional …

Accelerating Mri Data Acquisition Using Parallel Imaging And Compressed Sensing, Haifeng Wang

Theses and Dissertations

Magnetic Resonance Imaging (MRI) scanners are one of important medical instruments, which can achieve more information of soft issues in human body than other medical instruments, such as Ultrasound, Computed Tomography (CT), Single Photon Emission Computed Tomography (SPECT), Positron Emission Tomography (PET), etc. But MRI's scanning is slow for patience of doctors and patients. In this dissertation, the author proposes some methods of parallel imaging and compressed sensing to accelerate MRI data acquisition. Firstly, a method is proposed to improve the conventional GRAPPA using cross-sampled auto-calibration data. This method use cross-sampled auto-calibration data instead of the conventional parallel-sampled auto-calibration data …

Novel Phantoms And Post-Processing For Diffusion Spectrum Imaging, Vaibhav Juneja

Dissertations & Theses (Open Access)

High Angular Resolution Diffusion Imaging (HARDI) techniques, including Diffusion Spectrum Imaging (DSI), have been proposed to resolve crossing and other complex fiber architecture in the human brain white matter. In these methods, directional information of diffusion is inferred from the peaks in the orientation distribution function (ODF). Extensive studies using histology on macaque brain, cat cerebellum, rat hippocampus and optic tracts, and bovine tongue are qualitatively in agreement with the DSI-derived ODFs and tractography. However, there are only two studies in the literature which validated the DSI results using physical phantoms and both these studies were not performed on a …

Controlling Dimensionality In A Systems Approach To Dynamic Multimodal Functional Brain Imaging, Srinivas Laxminarayan, Manu Ben Jonny, Solomon Diamond, Dana Brooks, Gilead Tadmore, Eric Miller, David Boas

Dana Brooks

The complementary spatial, temporal and specificity advantages of MRI, EEG, MEG, PET and DOT for functional brain imaging motivate interest in multimodal functional brain imaging. State-variable dynamical systems modeling of neural activity and its relation to local hemodynamics further coupled with autonomic physiology offers enhanced spatiotemporal resolution and insight into physiological signals and mechanisms. However, such a model also implies an explosion of state dimension. We discuss strategies for controlling this high dimensionality based on subspace approaches applied to the observed data and the model structure, and also describe some implications for understanding human brain function.

Traumatic Vs. Pathological Achilles Tendon Ruptures: A Look Into The Importance Of The Collagen Matrix And The Preferred Method Of Repair, Kathleen M. Mclean

Honors Theses

The Achilles tendon is the largest, strongest, and thickest tendon in the human body. While it may be the strongest, the Achilles tendon is also among one of the most frequently ruptured. These lower limb injuries arise as a result of athletically induced trauma or pathologically and steroidal induced trauma. While the manner in which athletic ruptures occurs can be determined on a case to case basis through the use of clinical examination, ultrasonography, and magnetic resonance imaging (MRI), the method in which the injury should be treated remains controversial. The two main methods of repair include a conservative approach …

Sar Map Of Gel Phantom In A 64mhz Mri Birdcage By Fiber-Optic Thermometry And Fdtd Simulation, Chirag Mukesh Patel

Master's Theses

As implantable medical devices are being used more often to treat medical problems for which pharmaceuticals don’t suffice, it is important to understand their interactions with commonly used medical modalities. The interactions between medical implants and Magnetic Resonance Imaging machines have proven to be a risk for patients with implants.

Implanted medical devices with elongated metallic components can create harmful levels of local heating in a Magnetic Resonance Imaging (MRI) environment [1]. The heating of a biological medium under MRI is monitored via the Specific Absorption Rate (SAR). SAR, defined as power absorbed per unit mass (W/kg), can be calculated …

Investigations Of Anatomical Connectivity In The Internal Capsule Of Macaques With Diffusion Magnetic Resonance Imaging, Kyle Andrew Ignatius Taljan

ETD Archive

Understanding anatomical connectivity is crucial for improving outcomes of deep brain stimulation surgery. Tractography is a promising method for noninvasively investigating anatomical connectivity, but connections between subcortical regions have not been closely examined by this method. As many connections to subcortical regions converge at the internal capsule (IC), we investigate the connectivity through the IC to three subcortical nuclei (caudate, lentiform nucleus, and thalamus) in 6 macaques. We show that a statistical correction for a known distance-related artifact in tractography results in large changes in connectivity patterns. Our results suggest that care should be taken in using tractography to assess …

Imaging The Vasculature With Susceptibility Weighted Imaging: Applications And Analysis, Samuel Barnes

Wayne State University Dissertations

Modern magnetic resonance imaging sequences allow detailed non-invasive imaging of both the arteries and veins. This work is divided into four sections that examine different applications and analysis of these sequences.

Susceptibility weighted imaging (SWI) typically generates excellent negative venous contrast. Techniques to generate positive arterial contrast in SWI images without degrading the venous contrast with a single echo are examined. By using high isotropic resolution and high readout bandwidth flow losses can be minimized (generating good arterial contrast) even at the long echo times required for good venous contrast. A downsampling filter is then used to restore lost venous …

Evaluation Of Upper Motor Neuron Pathology In Amyotrophic Lateral Sclerosis By Mri;Towards Identifying Noninvasive Biomarkers Of The Disease, Venkateswaran Rajagopalan

ETD Archive

Amyotrophic lateral sclerosis (ALS) is the commonest adult motor neuron disease (MND) which causes progressive muscle paralysis and death usually within 5 years of symptom onset. As a result, only ╠â30,000 individuals in the United States are afflicted at any one time even though 5,000 or more individuals are diagnosed yearly. The diagnosis of ALS requires evidence of degeneration in upper motor neurons (UMNs) in the brain and in lower motor neurons (LMNs) that exit the brainstem and spinal cord to innervate skeletal muscles. Diagnosis can be incorrect or delayed when disease is early or atypical because non-invasive objective tests …

Imaging Of Tyramine-Substituted Hydrogels For Tissue Replacement, Ediuska V. Laurens

ETD Archive

Novel tyramine-based hyaluronan (HA) and collagen hydrogels have been developed in which cross-linking is accomplished via peroxidase-mediated dityramine linkages allowing direct cross-linking in vivo. These TB hydrogels possess advantageous physical properties, which include excellent biocompatibility and the ability to mimic the biological, structural and mechanical properties of normal, healthy tissues, including cartilage, and thus provide for synthetic, implantable biomaterials suitable for a wide range of tissue types. The efficacy of these TB-hydrogels has been previously tested in a number of clinically relevant animal models, which have evaluated their applicability for the repair/replacement of various tissues, including cartilage. Nevertheless, there exists …

Fast Measurements Of Flow Through Mitral Regurgitant Orifices With Magnetic Resonance Phase Velocity Mapping, Haosen Zhang, Sandra S. Halliburton, Richard D. White, George P. Chatzimavroudis

Chemical & Biomedical Engineering Faculty Publications

Magnetic-resonance (MR) phase velocity mapping (PVM) shows promise in measuring the mitral regurgitant volume. However, in its conventional nonsegmented form, MR-PVM is slow and impractical for clinical use. The aim of this study was to evaluate the accuracy of rapid, segmented k-spaceMR-PVM in quantifying the mitral regurgitant flow through a control volume (CV) method. Two segmented MR-PVM schemes, one with seven (seg-7) and one with nine (seg-9) lines per segment, were evaluated in acrylic regurgitant mitral valve models under steady and pulsatile flow. A nonsegmented (nonseg) MR-PVM acquisition was also performed for reference. The segmented acquisitions were …

Ultrafast Flow Quantification With Segmented K-Space Magnetic Resonance Phase Velocity Mapping, Haosen Zhang, Sandra S. Halliburton, James R. Moore, Orlando P. Simonetti, Paulo R. Schvartzman, Richard D. White, George P. Chatzimavroudis

Chemical & Biomedical Engineering Faculty Publications

Magnetic resonance (MR) phase-velocity mapping (PVM) is routinely being used clinically to measure blood flow velocity. Conventional nonsegmented PVM is accurate but relatively slow (3–5 min per measurement). Ultrafast k-space segmented PVM offers much shorter acquisitions (on the order of seconds instead of minutes). The aim of this study was to evaluate the accuracy of segmented PVM in quantifying flow from through-plane velocity measurements. Experiments were performed using four straight tubes (inner diameter of 5.6–26.2 mm), under a variety of steady (1.7–200 ml/s) and pulsatile (6–90 ml/cycle) flow conditions. Two different segmented PVM schemes were …