Biomedical Engineering and Bioengineering Commons^™

Co-Transplantation Of Endothelial Progenitor Cells And Neural Progenitor Cells For Treating Ischemic Stroke In A Mouse Model, Jinju Wang

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Ischemic stroke (IS) is a major cause of death and disability with limited and less effective therapeutics. Transplantation of stem cells, such as neuronal progenitor cells (NPCs) and endothelial progenitor cells (EPCs), is promising for treating IS. It is well known that neurogenesis and angiogenesis are critical for cerebral repair following ischemic injury. However, whether co-transplantation of EPCs and NPCs has synergistic effects remains unclarified. In addition, the PI3K/Akt pathway participates in modulating a widely range of cellular functions such as anti-apoptotic and anti-oxidant. The signal pathways responsible for the effects of grafted NPCs and EPCs are also waiting for …

Low-Cost, Wireless Optical Oximeter For Monitoring Of Brain Function In High-Risk Pediatric Population, Zahra Meghjani

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Nearly 4 million neonates die every year due to brain injuries, most caused by hypoxia. Neonatal ICU requires newborns with critical health conditions to be monitored continuously calling for the need of a non-invasive, compact and portable device. However, commercial devices are mostly bulky and/or expensive. The neonatal mortality is higher in under-developed countries, where such expensive and large devices are not affordable. Hence, my thesis focuses on building first generation compact, inexpensive, and wireless device that can monitor and provide feedback to clinicians during intervention. This approach is based on light absorption by oxy- and deoxy-hemoglobin chromophores. The total …

A Fractal-Based Mathematical Model For Cancellous Bone Growth Considering The Hierarchical Nature Of Bone, Stephanie Marie Suhr

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The hierarchical structure of bone alone is not comprehensive enough to provide morphological explanation of how the size and arrangement of the trabeculae within cancellous bone affect load distribution, particularly concerning deterioration of bone in elderly patients. The collagen network and hydroxyapatite play a large role in defining the shape of trabeculae in cancellous bone despite that the arrangement and size is seemingly random. The growth of plates and rods in cancellous bone is mainly due to loading and stress lines within the bone, but mathematical predictive models can be developed using fractal analysis to show how bone may grow …

Optical Redox Imaging Of Metabolic Activity, Syed Anwar Hyder Zaidi

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Fluorescence imaging can be used to determine tissue metabolism, which is an indication of the cellular functionality. Metabolic contrast is useful for the early detection of several medical conditions such as cancer, diabetes, lung diseases etc. This study aims to use fluorescence imaging to quantify NADH and FAD, which are cellular metabolic indicators. A parameter known as Redox ratio, can be used to study metabolic state of several tissue types and disease states. To quantify the Redox ratio, three fluorescence imaging systems were optimized to measure the fluorescence signal from NADH and FAD. The first system was a camera based …

Early Assessment Of Burn Severity In Human Tissue With Multi-Wavelength Spatial Frequency Domain Imaging, Chien Sing Poon

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Burn injuries such as thermal burns, which are caused by contact with flames, hot liquids, hot surfaces, and other sources of high heat as well as chemical burns and electrical burns, affects at least 500,000 people in the United States, to which 45,000 of them require medical treatment and 3,500 of them result in death. It has also been reported that in the United States alone, fire results in a death approximately every three hours and an injury every 33 minutes. Early knowledge about burn severity can lead to improved outcome for patients. In this study, the changes in optical …

Extension Of Multivariate Analyses To The Field Of Microbial Ecology, Vijay Shankar

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Ground-breaking advancements in molecular and analytical techniques in the past decade have enabled researchers to accumulate data at an extraordinary rate. Especially in the field of microbial ecology, the introduction of technologies such as high-throughput sequencing, quantitative microarrays, nuclear magnetic resonance and mass spectrometry has led to the interrogation of diverse and previously unexplored microbial communities at unparalleled depth. Analysis and interpretation of patterns within datasets acquired with such high-throughput methods require powerful statistical approaches. A class of such techniques called multivariate statistical analyses is an excellent choice for analysis of complex microbiota-related datasets. This field of statistics is constantly …

Modeling Effects Of Diet On Human Gut Microbiota, Richard Thomas Agans

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The human gut microbiota is integrally involved in the metabolism of nutrients contained within the human diet. Studies into human nutrition have primarily been carried out using human and animal models. These studies are extremely important in our understanding of human nutrition, however, suffer from inherent limitations including unique microbial compositions between individuals, compliance in human studies, inability to carry out mechanistic studies, and inability to interrogate proximal regions of the gut without applying invasive techniques. In vitro gut simulator systems circumvent many of these limitations in animal and human models by allowing control of gut environmental conditions, decreasing variability …

A Functional Analysis Of The 3’ Regulatory Region Of The Immunoglobulin Heavy Chain Gene, Andrew David Snyder

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The immunoglobulin heavy chain (IGH) locus is partially responsible for immunoglobulin (Ig) production in B cells. The human IGH locus contains two 3’ regulatory regions (3’IghRR) that each contain three enhancers, which are thought to help drive overall transcription of the locus and also influence class switching to alternative Ig isotypes. The hs1.2 enhancer within the 3’IghRR is polymorphic in humans, containing a 53 bp invariant sequence (IS) that can be repeated up to four times. In vitro, the human hs1.2 enhancer is a sensitive target of exogenous chemicals, particularly 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD or dioxin), a potent inhibitor of Ig expression …

The Role Of Interleukin-2 In Directing Vascular Smooth Muscle Cell Function And Its Implications For Understanding The Progression Of Atherosclerosis, Prakash Arumugam

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Atherosclerosis is an inflammatory disorder of the vasculature leading to the development of plaques within vessel walls. A critical component of atherosclerosis involves migration and proliferation of vascular smooth muscle cells (VSMCs) into the developing plaque, however, its mechanism is not yet understood. Previous studies have reported that IL-2 is deposited within the vasculature and IL-2 accumulates within atherosclerotic plaques due to secretion by infiltrating Th-1 cells. A limited number of studies suggest that VSMCs express a partial IL-2 receptor, comprising the ß and ¿ subunit. This suggests that IL-2 may elicit a physiological response in VSMCs. Considering IL-2’s proliferative …

Modification Reactivity Analysis Of Human Replication Protein A In Biologically Important States, Ryan James Yoakum

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Human Replication Protein A (RPA) is a heterotrimeric protein consisting of 70, 32, and 14 kDa subunits. RPA is the predominant single stranded DNA binding protein within the cell. It is involved in all forms of the DNA metabolic pathways, including but not limited to, replication, recombination, damage repair, as well as cell cycle and DNA check point signaling. RPA is phosphorylated (pRPA) during G1-S phase and is dephosphorylated during M phase. Further, RPA is hyperphosphorylated during DNA damage. Through the use of x-ray crystallography and nuclear magnetic resonance, researchers have proposed models and structures based on truncated portions of …

Comparison Of Vascular Pulsatility In The Native Beating Heart Versus Direct Mechanical Ventricular Actuation Support Of The Fibrillating Heart, Nathan Victor Wright

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Most conventional cardiac assist devices today employ continuous flow blood pumps to supplement function in the dysfunctional heart. Continuous flow pumps are predominantly preferred to the original pulsatile pumps due to the smaller size (greater implantability) and higher efficiency they achieve. However, interest in the impact of vascular pulsatility on human health has arisen from the growing evidence of higher complications with nonpulsatile devices compared to pulsatile devices. Direct cardiac compression (DCC) offers a unique solution to the pulsatility issue through the application of force directly to the heart's surface. It is believed that employing the existing pump architecture of …

Improving Anomaly Detection Through Identification Of Physiological Signatures Of Unconscious Awareness, Alyssa Marie Piasecki

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Missed anomalies have the potential to cause detrimental effects in the Intelligence, Surveillance, and Reconnaissance (ISR) domain. One possible cause of these missed anomalies is that cognitive processing may not reach conscious awareness and may only be perceived by the unconscious mind. Identification of correlates of these unconscious processes could provide an insight into potential missed targets. The present study explored missed anomalies in a visual search task and the possibility of unconscious awareness. Eye metrics were recorded and a "Detection Threshold Model" was created and validated with a nominal logistic regression model, in order to characterize the search patterns …

Use Of Eeg To Understand Brain Intensity In Engineering Students Using A Stem Educational Mobile Application, Kevin Hatcher

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In the first two years of undergraduate work in engineering, students are taught concepts such as physics, electronics, and most importantly calculus. It is especially important for students to get a better grasp on foundational math concepts, such as calculus in the beginning or they will be overwhelmed by the workload to come. The focus of this research was to understand how students learning calculus, could benefit from an augmented-educational mobile application. In the study students were measured with electroencephalography (EEG) measurements utilized by the Emotive EPOC® as they attempted to solve different limit themed problems in order to determine …

Design And Evaluation Of A Fiber Optic Shape Tracker For Use As A Navigational Aid In Endovascular Guidewires And Catheters, Benjamin Stewart Rinehart

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Endovascular intervention is the current gold-standard for screening and treating aortic aneurysms and complications caused by peripheral vascular disease (PAD). A typical endovascular procedure begins with inserting an endovascular guidewire into the femoral artery via incision. A catheter is then threaded over the guidewire and both tools are then navigated to the treatment site. The navigation is guided solely by fluoroscopy (x-ray) imagery that is performed throughout the duration of the procedure. Not only does this method provide limited 2-D guidance, but also exposes the patient and medical staff to high levels of radiation. This thesis research focuses on the …

Vitamin D Receptor And 1Α, 25-Dihydroxyvitamin D3 Mediated Regulation Of Δnp63Α, Hill Tremayne Natasha

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1alpha, 25-dihydroxyvitamin D3 (VD3), the ligand for the Vitamin D Receptor (VDR), functions to both inhibit cell growth and promote cell survival. High-dose VD3 is being utilized as a cancer preventive therapy for melanoma, breast and colorectal cancers, without a complete understanding of VD3/VDR signaling. DeltaNp63alpha, considered to be a proto-oncogene, is overexpressed in non-melanoma skin cancers (NMSCs), induces VDR gene expression and promotes keratinocyte proliferation, and may serve to exacerbate non-melanoma skin cancer. The objective of this dissertation was to determine whether VDR/VD3 signaling promotes keratinocyte proliferation by up-regulating DeltaNp63alpha. I showed that VDR increases DeltaNp63alpha expression at both …

Measuring Pulse Rate Variability During Motion Artifact With A Non-Contact, Multi-Imager Photoplethysmography System, Zachary Adam Kiehl

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Non-contact imaging photoplethysmography is an exciting new field based on the principles of traditional photoplethysmography where viable signals can now be acquired without the use of contact equipment. Recent advances regarding non-contact imaging photoplethysmography have permitted a wide range of new possibilities focused on sensing the cardiopulmonary system. Physiological metrics such as pulse rate, respiration rate, and pulse rate variability can be obtained by current photoplethysmographic imaging methods. Although previous systems were challenged by head-motion artifacts, the mitigation of rigid head-motion artifacts has been demonstrated with a multi-imager design. This study investigated the feasibility and accuracy of pulse rate variability …

Neural Correlates Of Convergence Eye Movements In Convergence Insufficiency Patients Vs Normal Binocular Vision Controls: An Fmri Study, Chirag Bharatkumar Limbachia

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Convergence Insufficiency is a binocular vision disorder, characterized by reduced ability of performing convergence eye movements. Absence of convergence causes, eye strain, blurred vision, doubled vision, headaches, and difficulty reading due frequent loss of place. These symptoms commonly occur during near work. The purpose of this study was to quantify neural correlates associated with convergence eye movements in convergence insufficient (CI) patients vs. normal binocular vision (NBV) controls, and to examine statistical differences between them. Functional magnetic resonance imaging (fMRI) scans were collected using a 3T Siemens scanner. A disparity-driven convergence task was designed using a standard block design approach, …

Left Ventricle Volume Reconstruction To Minimize Scanning Time: Slice-Fitting Method, Prateek Kalra

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Assessment of left ventricle volume is usually done for diagnosis and prognosis of heart diseases. Slice-summation method is a standard method used to compute left ventricle volume where region of interest from several short axis (SA) slices are added. There are some limitations to this method, however. It requires short-axis slices to be taken parallel to the mitral valve plane from the base to apex. Moreover, scanning several short-axis slices is a tedious and time consuming process especially for studies that require several hundreds datasets. There are some existing methods to reconstruct left ventricle volume but most of them depend …

Silver Nanoparticles: The Immediate Benefits Of Low Bacterial Resistance And The Long-Term Risk Of Persistent Stress In Mammalian Cells, David Harold Ellis

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Silver nanoparticles (AgNPs) are the fastest growing sector of nanotechnology, due mostly to their antibacterial properties. The antibacterial effectiveness of AgNPs is well known and derives from the shedding of silver ions which have multiple antibacterial targets in the bacterial cell. Due to their continuous release of ions and demonstrated antibacterial potency, some predict that AgNPs have a low potential for resistance development, which would make them a valuable asset in wound management. The ability for AgNPs to cause oxidative imbalance in mammalian cells is also well known, but the potential long-term impact of such a stress has not been …

Reducing Error Rates In Intelligence, Surveillance, And Reconnaissance (Isr) Anomaly Detection Via Information Presentation Optimization, Donald Glen Church

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In the ISR domain, time-critical decision-making and dealing with multiple information feeds places high demands on the human. When designing aids and tools, the decision maker must be taken into account. This research looks toward designing a decision aid based the personality type of the operator. The BFI is used to determine the impact of personality and decision aid type (graphical vs. textual) on performance. Results show Openness and Agreeableness to be the strongest single factors for decision aid impact on performance. A model was also developed to show how the human takes the information and relates it to a …

Evaluating Warehouse Strategies For Two-Product Class Distribution Planning, Bradley R. Guthrie

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Distribution networks often manage products with varying life-cycles, where demand for some products is relatively stable throughout the year (basic products) and the demand for others is short-lived (fashion products). Beyond the coordination of inventory and transportation decisions, decisions at the warehouse must be considered as its resources are frequently shared by both product classes simultaneously. For this two-product class distribution planning problem, we focus on characterizing three real-world distribution strategies observed in industry and evaluating them based on total distribution cost and warehouse measures (e.g., workforce plan and workload variation) against a benchmark ILS-based heuristic. Experimental results suggest that …

A Novel Function For Fancj Helicase In Microsatellite Stabilization During Replication Stress, Joanna Barthelemy

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Noncanonical DNA structure-forming sequences, such as hairpin structures, stall replication forks in vivo, expand or contract during DNA replication, and colocalize with chromosome fragile sites. Since the frequency of hairpin formation is higher than the frequency of expansion or contraction, the cell may possess mechanisms to resolve hairpin structures prior to replication fork stalling. One possible activity for hairpin resolution is the FANCJ DNA helicase, known to unwind noncanoncial DNA structures in vitro. Indeed, mutations or loss of any of the nineteen FANC genes, including FANCJ, leads to genome instability and the cancer-prone syndrome Fanconi anemia (FA). To test whether …

Design Of A Low-Cost Wireless Nirs System With Embedded Linux And A Smartphone Interface, Diogo Da Silva Dias

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Wireless near-infrared spectroscopy (NIRS) systems can help to reduce movement artifacts, and distraction due cables. Utilizing Embedded Linux (EL) can reduce size, development time, cost of a project and allow portability. The goal of this project is to develop a low-cost wireless small-sized NIRS system using EL and a Smartphone as the interface. This was achieved using a BeagleBone Black (BBB) with a deployed custom EL that: (1) controls two sources, (2) receives data from photodetectors (PDs), (3) processes, stores and transmits data via Bluetooth to an Android Smartphone. This device was implemented in under US$150 and its dimension was …

Measuring Brain Activation Through Functional Magnetic Resonance Imaging (Fmri) During Visual Task Learning, Mohd Saif Usmani

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The purpose of this study is to understand the brain activity associated with learning a visual task by utilizing the applications of functional magnetic resonance imaging in cognitive neuroscience. The study was performed using two visual tasks referred to as aircraft and control, respectively. We compared the brain activation of these two visual tasks to understand the learning process of the participants. Fifteen young adults, ten males and five females, ranging in age from 19 to 35 years, participated in a ten-week study. Eight participants dropped out either voluntarily or were excluded for different reasons. The data analysis was completed …

The Organization Of Kv2.1 Channel Proteins In The Membrane Of Spinal Motoneurons: Regulation By Injury And Cellular Activity, Shannon Hunt Romer

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The intrinsic membrane properties of neurons in the central nervous system are controlled by the tight regulation of membrane-bound ion channels. Rather than existing as static entities operating only in opened or closed states in fixed locations, ion channels are dynamic molecules with the capacity to adopt multiple functional states through conformational changes and/or post-translational modification - enabling flexibility in their activity. Furthermore, the location of ion channels within certain membrane compartments and/or signaling ensembles is critical to synaptic integration and shaping of firing properties, and can also be dynamically modified by changes in neuronal activity and pathology. In mammalian …

Manipulation Of Gold Nanorod Physicochemical Properties To Enhance Biocompatibility, Uptake And Intracellular Preservation Of Optical Properties For Bio-Imaging And Plasmonic Photo-Therapeutic Applications, Anthony B. Polito

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Gold nanorods (GNRs) due to their tunable optical properties within the near infrared (NIR) region have been identified as strong candidates for new nano-based biomedical applications. Unfortunately, many have reported GNR cytotoxicity and it is still unclear how GNR aspect ratio (AR), surface charge and surface chemistry contribute to cellular association and cytotoxicity. GNR surface chemistry modifications have been reported to reduce cytotoxicity, however they can result in poor cellular uptake and loss of NIR optical properties preventing efficiency with bio-imaging and photo-thermal applications. The aim of this study was to determine if manipulation of GNR physicochemical properties could enhance …

An Improved Adaptive Filtering Approach For Removing Artifact From The Electroencephalogram, Justin Ronald Estepp

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The biophysics of volume conduction that enable electrophysiological data acquisition also result in the mixing of data sources including possible, undesirable noise sources at the electrode interface. This work specifically focuses on improving the performance of the recursive least-squares (RLS) adaptive filtering method for removing eye movement artifact from the electroencephalogram. In biophysically-inspired simulated data, the RLS algorithm is verified to produce results that are inferior to extended infomax independent component analysis (ICA), the most widely used artifact correction approach in this problem space, due to its non-linear filter phase response and the presence of bidirectional contamination, or cross-talk, resultant …

Regulation Of Motoneuron Firing Properties: Intrinsic And Circuit-Based Mechanisms, Adam S. Deardorff

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Body and limb movements are controlled by regulating the activity of motor pools and their constituent motoneurons. An extensive complement of tightly regulated ion channels and second messenger systems determine active motoneuron spiking behavior, while segmental propriospinal circuits ensure the faithful execution of motor commands by providing real time sensory feedback to motoneurons and other somatosensory centers. However, current mechanistic understanding is incomplete for critical factor regulating motoneuron firing properties. Fundamental gaps in knowledge exist regarding (a) the spatial distribution and organization of specific ion channels in motoneurons, (b) the contribution of specific channels to motoneuron intrinsic properties, (c) the …

Evaluation Of Functional Near Infrared Spectroscopy (Fnirs) For Assessment Of The Visual And Motor Cortices In Adults, Brenna Giacherio

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Introduction: Functional near-infrared spectroscopy (fNIRS) is a relatively young technique in the field of medical imaging. As such, it has yet to be widely implemented for clinical use, despite its promising advantages. However, unlike fMRI-its much bulkier and costly counterpart-fNIRS has yet to be proven as a standalone imaging tool within a clinical setting, particularly that of ophthalmology or physical therapy.

Methods: Ten healthy young adults (23.8 ± 4.8 years) participated in the study. Activation of the visual cortex was achieved utilizing various reversing checkerboard stimuli across three data collection sessions for each participant. Further, activation of the motor cortex …

Rab3a As A Modulator Of Homeostatic Synaptic Plasticity, Andrew G. Koesters

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The nervous system is faced with perturbations in activity levels throughout development and in disease or injury states. Neurons need to adapt to these changes in activity, but also need to maintain circuit firing within a normal range to stabilize the network from becoming too excited or too depressed. Homeostatic synaptic plasticity, the compensatory increase or decrease in synaptic strength as a result of excessive circuit inhibition or excitation, is a mechanism that the nervous system utilizes to keep network activity at normal levels. Despite intense effort, little is known about the mechanisms underlying homeostatic synaptic plasticity. Numerous studies have …