Library and Information Science Commons^™

Foundation Models In Bioinformatics, Fei Guo, Renchu Guan, Yaohang Li, Qi Liu, Xiaowo Wang, Can Yang, Jianxin Wang

Computer Science Faculty Publications

With the adoption of foundation models (FMs), artificial intelligence (AI) has become increasingly significant in bioinformatics and has successfully addressed many historical challenges, such as pre-training frameworks, model evaluation and interpretability. FMs demonstrate notable proficiency in managing large-scale, unlabeled datasets, because experimental procedures are costly and labor intensive. In various downstream tasks, FMs have consistently achieved noteworthy results, demonstrating high levels of accuracy in representing biological entities. A new era in computational biology has been ushered in by the application of FMs, focusing on both general and specific biological issues. In this review, we introduce recent advancements in bioinformatics FMs …

Not Here, Go There: Analyzing Redirection Patterns On The Web, Kritika Garg, Sawood Alam, Dietrich Ayala, Michele C. Weigle, Michael L. Nelson

Computer Science Faculty Publications

URI redirections are integral to web management, supporting structural changes, SEO optimization, and security. However, their complexities affect usability, SEO performance, and digital preservation. This study analyzed 11 million unique redirecting URIs, following redirections up to 10 hops per URI, to uncover patterns and implications of redirection practices. Our findings revealed that 50% of the URIs terminated successfully, while 50% resulted in errors, including 0.06% exceeding 10 hops. Canonical redirects, such as HTTP to HTTPS transitions, were prevalent, reflecting adherence to SEO best practices. Non-canonical redirects, often involving domain or path changes, highlighted significant web migrations, rebranding, and security risks. …

Github Repository Complexity Leads To Diminished Web Archive Availability, David Calano, Michael Nelson, Michele Weigle

Computer Science Faculty Publications

Software is often developed using versioned controlled software, such as Git, and hosted on centralized Web hosts, such as GitHub and GitLab. These Web hosted software repositories are made available to users in the form of traditional HTML Web pages for each source file and directory, as well as a presentational home page and various descriptive pages. We examined more than 12,000 Web hosted Git repository project home pages, primarily from GitHub, to measure how well their presentational components are preserved in the Internet Archive, as well as the source trees of the collected GitHub repositories to assess the extent …

Coming Back Differently: An Exploratory Case Study Of Near Death Experiences Of Webpages, Lesley Frew, Michael L. Nelson, Michele Weigle

Computer Science Faculty Publications

In this case study, we use web archives to analyze 8,824 webpages that were taken offline and subsequently put back online, thus experiencing a “near death experience.” We enumerate the stages of a webpage’s near death experience, including the change from a successful HTTP status code to non-successful and back, the intermediate stage with markers such as an under construction banner, and an analysis of how the pages came back differently.

From Philosophy To Nlu: Evolving Definitions With Research Hypotheses, Jian Wu, Sarah Rajtmajer

Computer Science Faculty Publications

Over the past decades, alongside advancements in natural language processing, significant attention has been paid to training models to automatically extract, understand, test, and generate hypotheses in open and scientific domains. However, interpretations of the term hypothesis for various natural language understanding (NLU) tasks have migrated from traditional definitions in the natural, social, and formal sciences. Even within NLU, we observe differences defining hypotheses across literature. In this paper, we overview and delineate various definitions of hypothesis. Especially, we discern the nuances of definitions across recently published NLU tasks. We highlight the importance of well-structured and well-defined hypotheses, particularly as …

From Philosophy To Nlu: Evolving Definitions Of Research Hypotheses, Jian Wu, Sarah Rajtmajer

Computer Science Faculty Publications

Over the past decades, alongside advancements in natural language processing, significant attention has been paid to training models to automatically extract, understand, test, and generate hypotheses in open and scientific domains. However, interpretations of the term hypothesis for various natural language understanding (NLU) tasks have migrated from traditional definitions in the natural, social, and formal sciences. Even within NLU, we observe differences defining hypotheses across literature. In this paper, we overview and delineate various definitions of hypothesis. Especially, we discern the nuances of definitions across recently published NLU tasks. We highlight the importance of well-structured and well-defined hypotheses, particularly as …

Information Literacy & Library Research Skills: What Faculty Think Fy Students Know - A Pilot Study, Julia Warga

2025 Faculty Bibliography

No abstract provided.

Uso De Herramientas De Inteligencia Artificial Generativa Por Parte De Docentes En Una Escuela Del Suroeste De Puerto Rico, Glorimar N. Rodríguez Guiliani

Theses and Dissertations

Esta disertación aplicada fue diseñada para investigar el nivel de conocimiento, uso y dificultades que enfrentan los docentes de quinto a duodécimo grado en una escuela privada del suroeste de Puerto Rico respecto a tecnologías emergentes las cuales presentan desafíos significativos para los docentes y los estudiantes. Se exploró la utilización de herramientas de inteligencia artificial generativa (GenAI) como ChatGPT dentro y fuera del aula para actividades pedagógicas y administrativas.

Los hallazgos revelaron una notable carencia en el conocimiento docente sobre el uso y habilidades de la inteligencia artificial. Se identificó, también, una deficiencia en la capacidad de los docentes …

Information Studies: Library Development Of An Undergraduate Curriculum For The Information Age, Heather A. Howard, Erla Heyns, Matthew Hannah, Dave Zwicky, Clarence Maybee

Libraries Faculty and Staff Scholarship and Research

In today’s information-rich environment, students need to understand how to navigate information challenges such as mis/disinformation, conspiracy theories, algorithmic and information literacy, and artificial intelligence. As we have seen, such information challenges will continue to have an outsized impact on our online lives, civic health, and democratic norms. These information challenges have had a dramatic impact on democratic norms. To address these challenges, librarians at a large public university used both qualitative and quantitative methods such as an environmental scan, stakeholder analysis, focus groups, and interviews to inform the development of an Information Studies Minor designed to intervene in this …

Medical Students' Attitudes Towards Research Participation After The United States Medical Licensing Examination Step 1 Scoring Change, Danxun Li, Nina Li, Curt Bay, Uzoma Ikonne

Department of Medicine Faculty Publications

Background

The recent transition of scoring for the United States Medical Licensing Examination (USMLE) Step 1 exam from a numerical grading system to pass/fail system has significant implications for residency applicants. It is anticipated that research productivity will gain greater importance in the evaluation process. To understand how medical institutions can best support students, we seek to understand medical students' motivations and experience conducting research in medical school after the USMLE Step 1 scoring change.

Methods

This is a mixed-methods, cross-sectional study that examines the motivations and barriers that medical students face in conducting academic or clinical research. A survey …

Hearing From Working Nurses: Incorporating Real-World Knowledge Practices Into The Framework To Better Instruct Tomorrow’S Healthcare Professionals, Anne R. Diekema, Elizabeth (Betsy) S. Hopkins, Britt Fagerheim, Brandon Patterson, Nena Schvaneveldt

Library Faculty & Staff Publications

There is a certain duality to the role of librarians in higher education as the job requires preparing students for their current academic work, such as doing research for writing papers, while at the same time preparing students for their future professional information work.¹ Librarians seeking guidance on teaching information literacy more comprehensively are left to study the professional standards of the targeted professional group,² and find or carry out research on these practitioners.³ Synthesizing and translating these findings into instructional approaches while staying true to existing information literacy standards, however, can be challenging.⁴ In this …

Rrh Library Newsletter, Winter 2025, Libraries At Rochester Regional Health

Rochester Regional Health authored publications and proceedings

Newsletter sections include: New Database: Embase; St. Lawrence Health New Database Access; EBSCOhost New Database User Interface; Discovery Tool Update

Friends Of The Library Newsletter, Spring 2025, Hillary Richardson

Fant Library News and Reports

No abstract provided.

Gvsu Undergraduate And Graduate Catalog 2025-2026, Grand Valley State University

Course Catalogs, 1963 - Current

Grand Valley State University 2025-2026 undergraduate and graduate course catalog. Course catalogs are published annually to provide students with information and guidance for enrollment.

The Invisible Influencer In Information Infrastructure, Herbert Van De Sompel, Michael L. Nelson

Computer Science Faculty Publications

The UPS Prototype was a proof-of-concept web portal built in preparation for the Universal Preprint Service Meeting held in October 1999 in Santa Fe, New Mexico. The portal provided search functionality for a set of metadata records that had been aggregated from a range of repositories that hosted preprints, working papers, and technical reports. Every search result was overlaid with a dynamically generated menu, called an SFX-menu, that provided a selection of value-adding links for the described scholarly work. The meeting eventually led to the Open Archives Initiative and its Protocol for Metadata Harvesting (OAI-PMH), which remains widely used in …

Aku Libraries Annual Report - 2025, Office Of The University Librarian

Office of the University Librarian Reports

- Message by Peter Gatiti Associate Vice Provost & University Librarian

- The Beautiful Nakawa Campus Library

- AKU Author’s Day 2025

- Celebrating 5 Years of AKU Author’s Day: Bold Voices, Powerful Stories, Lasting Impact.

- A Student’s Journey into Co-Authoring Neuroscience

- My Fear of Academic Writing

- University Library Strategic Plan 2024-2029

- Lecture Series on Open Science

- Behind the Scenes

- Our Libraries & Students

- Book Conversations…

- RFID Technology at AKU Libraries

- Video Editing: Where Vision Meets Creativity

- Preserving Today for Tomorrow

- “Our Collections Matter”

- The FMIC Library

- …

Investigating Post-Adoption Abandonment Of Mental Health Mobile Applications Among Young Adults, Donald Harris

Electronic Theses & Dissertations (2024 - present)

The rising prevalence of mental health issues among young adults has driven increased interest in Mental Health Mobile Applications (MHMAs), which offer accessible and cost-effective solutions to traditional barriers such as financial limitations, stigma, and restricted healthcare access. Despite their promise, MHMAs frequently experience high rates of attrition and abandonment, significantly limiting their long-term effectiveness. Employing a mixed-methods, multi-stage research design, this dissertation explores the determinants of MHMA abandonment among young adults, emphasizing the interplay between technological inhibitors and enablers, individual user characteristics, and the mediating roles of user satisfaction and perceived usefulness.

Study 1 utilized quantitative text analysis, including …

Creating And Implementing An Inclusive Metadata Policy, Nicole Lewis, Jeremy Myntti

Faculty Publications

The BYU Library developed an Inclusive Metadata Policy for metadata creators to use when creating and remediating descriptions to be more inclusive. Accompanying the policy is a companion document with recommendations and examples, including links to many external resources. In addition to working with stakeholders in the library to develop the policy, we consulted with the University’s Office of Belonging. This presentation will describe the process we used to create the library policy and recommendations document and share information about how the policy has been implemented.

2025 Digital Commons And Experts Annual Report, Amanda Steinvall

Publications 2026-present

No abstract provided.

Status-Based Microaggressions Experienced By Teacher-Librarians And Advocacy Strategies To Address Them, Jennifer Mary Mckenzie

Antioch University Dissertations & Theses

This qualitative dissertation explores the lived experiences of Oregon certified teacher-librarians and examines how status-based microaggressions impact their professional roles, working conditions, and advocacy efforts. Drawing from focus group methodology, consciousness-raising groups, and microaggression theory, particularly Dr. Derald Wing Sue’s Five Phase Microaggression Process Model, this study analyzes data from nine virtual focus groups with 20 participants representing 14 Oregon school districts. Oregon teacher-librarians are among the most understaffed in the nation and often experience professional marginalization. This study introduces participants to the term “status-based microaggression,” instances rooted in perceived organizational hierarchies. This study finds that all participants were unfamiliar …

School Library Professionals’ Perceptions Of Students’ Digital Information Literacy, Margaret Kristin Merga, Saiyidi Mat Roni

Research outputs 2022 to 2026

Young people need strong digital information literacy (DIL) skills to effectively source, interpret and evaluate the credibility of online information. As DIL educators and advocates within contemporary schools, school library professionals can provide cross-contextual insights into their students’ DIL knowledge, skills and learning opportunities. Data from the 2024 International School Library Workforce Survey suggest that developing DIL may not be a typical priority in all schools and countries. Students’ DIL was felt to be low. School library professionals may be underutilized for supporting DIL learning in 35% of contexts, highlighting the need for greater understanding of this professional role.

Advancing Deib In Our Communities: How To Gain Leadership Experience At Work In A Non-Supervisory Role: Advocacy, Conversations, And Creating Change, Jason Tubinis, Havilah Joy-Steinmen Bakken, Aamir Abdullah, Valerie Horton

Scholarly Works

The article emphasizes the critical role of diversity, equity, inclusion, and belonging (DEIB) in librarianship and legal professions, highlighting the challenges of information overload and the importance of advocacy. It provides strategies to manage information effectively and stay informed, advocating for the use of reliable sources and critical media literacy to navigate misinformation.

An Analytical Review Of Preprocessing Techniques In Bengali Natural Language Processing, Sovon Chakraborty, Protiva Das, Shakib Mahmud Dipto, Md Aktaruzzaman Pramanik, Jannatun Noor

Computer Science Faculty Publications

Research in Bengali Natural Language Processing (BNLP) is rapidly expanding. Despite being one of the most widely spoken languages in the world, BNLP research remains insufficient, particularly in Bengali speech recognition. The languages rich morphology, agglutinative structure, and diverse dialects make text and speech processing especially challenging. However, these challenges can be addressed with effective preprocessing techniques. Various organizations in Bangladesh and West Bengal are integrating Natural Language Processing (NLP) into their services, but without a thorough understanding of preprocessing, these implementations remain incomplete. Applying proper preprocessing techniques to the Bengali language will serve as a foundation for developing robust …

A Bibliographic And Topic Modeling Analysis Of The P-Adic Theory Literature Using Latent Dirichlet Allocation, Humberto Llinás, Ismael Gutiérrez, Anselmo Torresblanca, Javier De La Hoz, Brian Llinás

Computer Science Faculty Publications

P-adic analysis, introduced by Kurt Hensel in the early 20th century, has developed into a fundamental area of mathematical research with broad applications in number theory, algebraic geometry, and mathematical physics. This study aims to examine the thematic evolution and scholarly impact of p-adic research through a comprehensive topic modeling and bibliometric analysis. Using classical bibliometric techniques (e.g., performance analysis, co-authorship, and co-citation networks) combined with Latent Dirichlet Allocation (LDA), we analyzed 7388 peer-reviewed documents published between 1965 and 2024. The computational workflow was conducted using R (version 4.4.1) and VOSviewer (version 1.6.20), which enabled the identification of 20 distinct …

Can Llms Beat Humans On Discerning Human-Written And Llm-Generated Science News, Dominik Soós, Meng Jiang, Jian Wu

Computer Science Faculty Publications

Science news is increasingly important in connecting scientists and the public by sharing discoveries and innovations. With the rise of large language models (LLMs), there is potential to automate science news creation, but concerns exist about the quality of LLM-generated news versus human-written news. This paper explores whether LLMs can outperform humans in distinguishing between human-written and LLM-generated news. Inspired by the Chain-of-Thought prompting method, we designed a simple yet effective variant called Guided Few-shot (GFS), which encodes the characteristics of news of two types with examples. Our experiments indicated that GFS with just a single example effectively boosted the …

Humans Vs. Llms On Open Domain Scientific Claim Verification: A Baseline Study, Benjamin Curtis, Stefania Dzhaman, Matthew Maisonave, Jian Wu

Computer Science Faculty Publications

Verifying scientific claims is challenging for the general public because most people lack domain knowledge. Manual verification by subject domain experts is accurate, but it is obviously not scalable to meet the rising number of scientific claims on the Web. Whether the emerging large language models and large reasoning models can be used for scientific claim verification, and how their performances compare to humans, are still research questions. To this end, we developed a new benchmark MSVEC2 that consists of 138 claims from credible fact verification websites and science news outlets. Two tasks were given to both human and LLM …

Self-Preservation: Autobiography As A Form Of Archivization As Seen Through The Life And Poetic Works Of John Clare, Meghan J. Slaff

Electronic Theses & Dissertations (2024 - present)

This paper will look at how the processing efforts of an archivist mirror that of an autobiographer through the shared motivation of adding to the cultural memory or textual canon of a society. For archival purposes, the typical steps of ingesting, preparing, and presenting a collection are creation, capture, arrangement/description, and pluralization. To create an autobiography, writers take the memories that have been created and experienced due to events in their lives and capture those memories via recording in the literary form known as autobiography. These autobiographers then arrange and describe their memories in a way that shows vast similarities …

Conference Program 2025, Georgia Southern University

Georgia International Conference on Information Literacy

2025 Program

An Uphill Battle: School Library Professionals Fostering Student Reading Engagement, Margaret Kristin Merga, Saiyidi Mat Roni

Research outputs 2022 to 2026

Reading engagement influences students’ literacy attainment. School library professionals provide resources, environments and guidance to promote reading for pleasure, but little is known about how this role is currently supported or challenged. Drawing on mixed methods survey responses from 971 school library professionals from 63 countries, integrated findings suggest that younger students had greater access to the library, and that limiting access may negatively influence student engagement. The educative value of reading aloud and reading for pleasure may be poorly understood in some schools. Most parents had no access to the school library; in some contexts, this was due to …

Showcasing Data With Widgets And Dashboards: Making Analytics Data More Accessible For Alma Users, Mary Tuttle

Library Scholarship

This presentation covers different methods of making data in Alma Analytics more accessible to Alma users. It demonstrates creating visualizations in Alma Analytics and the Data Visualization tool, creating widgets for users' Alma homepages, managing tricky sorting, and adding dynamic action links to Analytics reports and widgets.