Statistics and Probability Commons^™

H-Coloring Tori, John Engbers, David Galvin

Mathematics, Statistics and Computer Science Faculty Research and Publications

For graphs G and H, an H-coloring of G is a function from the vertices of G to the vertices of H that preserves adjacency. H-colorings encode graph theory notions such as independent sets and proper colorings, and are a natural setting for the study of hard-constraint models in statistical physics. We study the set of H-colorings of the even discrete torus View the MathML source, the graph on vertex set {0,…,m−1}d (m even) with two strings adjacent if they differ by 1 (mod m) on one coordinate and agree on all others. This is a bipartite graph, with bipartition …

Analyzing Multiple-Probe Microarray: Estimation And Application Of Gene Expression Indexes, Mehdi Maadooliat, Jianhua Z. Huang, Jianhua Hu

Mathematics, Statistics and Computer Science Faculty Research and Publications

Gene expression index estimation is an essential step in analyzing multiple probe microarray data. Various modeling methods have been proposed in this area. Amidst all, a popular method proposed in Li and Wong (2001) is based on a multiplicative model, which is similar to the additive model discussed in Irizarry et al. (2003a) at the logarithm scale. Along this line, Hu et al. (2006) proposed data transformation to improve expression index estimation based on an ad hoc entropy criteria and naive grid search approach. In this work, we re-examined this problem using a new profile likelihood-based transformation estimation approach that …

Measuring Infertility In Populations: Constructing A Standard Definition For Use With Demographic And Reproductive Health Surveys, Maya N. Mascarenhas, Hoiwan Cheung, Colin D. Mathers, Gretchen A. Stevens

Dartmouth Scholarship

Background: Infertility is a significant disability, yet there are no reliable estimates of its global prevalence. Studies on infertility prevalence define the condition inconsistently, rendering the comparison of studies or quantitative summaries of the literature difficult. This study analyzed key components of infertility to develop a definition that can be consistently applied to globally available household survey data.

Methods: We proposed a standard definition of infertility and used it to generate prevalence estimates using 53 Demographic and Health Surveys (DHS). The analysis was restricted to the subset of DHS that contained detailed fertility information collected through the reproductive health calendar. …

Genetic Modulation Of Lipid Profiles Following Lifestyle Modification Or Metformin Treatment: The Diabetes Prevention Program, Toni I. Pollin, Tamara Isakova, Kathleen A. Jablonski, Paul I.W. De Bakker, Andrew Taylor, Jarred B. Mcateer, Qing Pan, Edward Horton, Linda M. Delahanty, David Altshuler, Alan R. Shuldiner, Ronald Goldberg, Jose C. Florez, George A. Bray

Epidemiology Faculty Publications

Weight-loss interventions generally improve lipid profiles and reduce cardiovascular disease risk, but effects are variable and may depend on genetic factors. We performed a genetic association analysis of data from 2,993 participants in the Diabetes Prevention Program to test the hypotheses that a genetic risk score (GRS) based on deleterious alleles at 32 lipid-associated single-nucleotide polymorphisms modifies the effects of lifestyle and/or metformin interventions on lipid levels and nuclear magnetic resonance (NMR) lipoprotein subfraction size and number. Twenty-three loci previously associated with fasting LDL-C, HDL-C, or triglycerides replicated (P = 0.04–1×10−17). Except for total HDL particles (r = −0.03, …

Analysis Of Median Household Income Differences Between Election Day-Vbm And Eip Voters, Mark Salling, Norman Robbins

All Maxine Goodman Levin School of Urban Affairs Publications

Analysis of early in-person (EIP) voting in 2008 in Cuyahoga County shows that African-American, white, and Hispanic voters who used EIP voting had significantly lower incomes than members of those same groups who voted on election day or by mail. This result applies to those voting EIP on weekdays, extended weekday hours, weekends, and the three days before election day.

Targeted Learning For Causality And Statistical Analysis In Medical Research, Sherri Rose, Richard J.C.M. Starmans, Mark J. Van Der Laan

U.C. Berkeley Division of Biostatistics Working Paper Series

The authors present the use of targeted learning methods for medical research, prepared as a chapter for the upcoming book "Statistics: Discovering Your Future Power." The targeted learning framework involves the explicit specification of the data, model, and parameter. The estimators are double robust and efficient, and can incorporate machine learning procedures such as the super learner.

A Support Vector Machine Based Test For Incongruence Between Sets Of Trees In Tree Space, David C. Haws, Peter Huggins, Eric M. O'Neill, David W. Weisrock, Ruriko Yoshida

Statistics Faculty Publications

BACKGROUND: The increased use of multi-locus data sets for phylogenetic reconstruction has increased the need to determine whether a set of gene trees significantly deviate from the phylogenetic patterns of other genes. Such unusual gene trees may have been influenced by other evolutionary processes such as selection, gene duplication, or horizontal gene transfer.

RESULTS: Motivated by this problem we propose a nonparametric goodness-of-fit test for two empirical distributions of gene trees, and we developed the software GeneOut to estimate a p-value for the test. Our approach maps trees into a multi-dimensional vector space and then applies support vector machines (SVMs) …

Role Of Glutathione In Lung Retention Of 99mtc-Hexamethylpropyleneamine Oxime In Two Unique Rat Models Of Hyperoxic Lung Injury, Said H. Audi, David L. Roerig, Steven Thomas Haworth, Anne V. Clough

Biomedical Engineering Faculty Research and Publications

Rat exposure to 60% O₂ for 7 days (hyper-60) or to >95% O₂ for 2 days followed by a 24-hour in room air (hyper-95R) confers susceptibility or tolerance, respectively, of the otherwise lethal effects of subsequent exposure to 100% O₂. The objective of this study was to determine if lung retention of the radiopharmaceutical agent ^99mTc-HMPAO (hexamethylpropyleneamine oxime) is differentially altered in hyper-60 and hyper-95R rats. Tissue retention of HMPAO is dependent on intracellular content of the antioxidant glutathione (GSH) and mitochondrial function. HMPAO was injected i.v. in anesthetized rats and planar images were acquired. …

Evaluating The Consistency Of Gene Sets Used In The Analysis Of Bacterial Gene Expression Data, Nathan L. Tintle, Alexandra Sitarik, Benjamin Boerema, Kylie Young, Aaron Best, Matthew Dejongh

Faculty Work Comprehensive List

Background

Statistical analyses of whole genome expression data require functional information about genes in order to yield meaningful biological conclusions. The Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) are common sources of functionally grouped gene sets. For bacteria, the SEED and MicrobesOnline provide alternative, complementary sources of gene sets. To date, no comprehensive evaluation of the data obtained from these resources has been performed.

Results

We define a series of gene set consistency metrics directly related to the most common classes of statistical analyses for gene expression data, and then perform a comprehensive analysis of 3581 …

Modeling Sleep Fragmentation In Populations Of Sleep Hypnograms, Bruce J. Swihart, Naresh M. Punjabi, Ciprian M. Crainiceanu

Johns Hopkins University, Dept. of Biostatistics Working Papers

We introduce methods for the analysis of large populations of sleep architectures (hypnograms) that respect the 5-state 20-transition-type structure defined by the American Academy of Sleep Medicine. By applying these methods to the hypnograms of 5598 subjects from the Sleep Heart Health Study we: 1) provide the firrst analysis of sleep hypnogram data of such size and complexity in a community cohort with a 4-level comorbidity; 2) compare 5-state 20-transition-type sleep to 3-state 6-transition-type sleep for a check of feasibility and information-loss; 3) extend current approaches to multivariate survival data analysis to populations of time-to-transition processes; and 4) provide scalable …

A Phase I Bayesian Adaptive Design To Simultaneously Optimize Dose And Schedule Assignments Both Among And Within Patients, Thomas M. Braun, Jin Zhang

The University of Michigan Department of Biostatistics Working Paper Series

In traditional schedule or dose-schedule finding designs, patients are assumed to receive their assigned dose-schedule combination throughout the trial even though the combination may be found to have an undesirable toxicity profile, which contradicts actual clinical practice. Since no systematic approach exists to optimize intra-patient dose-schedule as- signment, we propose a Phase I clinical trial design that extends existing approaches that optimize dose and schedule solely among patients by incorporating adaptive variations to dose-schedule assignments within patients as the study proceeds. Our design is based on a Bayesian non-mixture cure rate model that incorporates multiple administrations each patient receives with …

An Analysis Of The Career Length Of Professional Basketball Players, Kwame D. Fynn, Morgan Sonnenschein

The Macalester Review

An interesting problem in professional basketball is predicting how long a player remains in the NBA League. Previous research on this problem has focused on factors such as race, performance in games, and size. We propose to analyze career duration in the NBA based on awards won, position played and biological variables such as height. Using Accelerated Failure Time models, Cox Proportional Hazards models and Kaplan-Meier analyses, we determine that both height and number of awards won lengthen career duration; however, only certain player positions significantly affect career length of a player.

Fitting And Interpreting Continuous-Time Latent Markov Models For Panel Data, Jane M. Lange, Vladimir N. Minin

UW Biostatistics Working Paper Series

Multistate models are used to characterize disease processes within an individual. Clinical studies often observe the disease status of individuals at discrete time points, making exact times of transitions between disease states unknown. Such panel data pose considerable modeling challenges. Assuming the disease process progresses according a standard continuous-time Markov chain (CTMC) yields tractable likelihoods, but the assumption of exponential sojourn time distributions is typically unrealistic. More flexible semi-Markov models permit generic sojourn distributions yet yield intractable likelihoods for panel data in the presence of reversible transitions. One attractive alternative is to assume that the disease process is characterized by …

Transitions Among Health States Using 12 Measures Of Successful Aging: Results From The Cardiovascular Health Study, Stephen Thielke, Paula Diehr

UW Biostatistics Working Paper Series

Introduction

Successful aging has many dimensions, which may manifest differently in men and women and at different ages. We sought to characterize one-year transitions in 12 measures of successful aging among a large cohort of older adults.

Methods

We analyzed twelve different measures of health in the Cardiovascular Health Study: self-rated health, ADLs, IADLs, depression, cognition, timed walk, number of days spent in bed, number of blocks walked, extremity strength, recent hospitalizations, feelings about life as a whole, and life satisfaction. We dichotomized responses for each variable into “healthy” or “sick”, and estimated the prevalence of the healthy state and …

Flexible Covariate-Adjusted Exact Tests For Randomized Studies, Alisa J. Stephens, Eric J. Tchetgen Tchetgen, Victor De Gruttola

Harvard University Biostatistics Working Paper Series

No abstract provided.

Locally Efficient Estimation Of Marginal Treatment Effects When Outcomes Are Correlated: Is The Prize Worth The Chase?, Alisa J. Stephens, Eric J. Tchetgen Tchetgen, Victor De Gruttola

Harvard University Biostatistics Working Paper Series

No abstract provided.

The Implementation Of The Shear Correlation Function And The Matter Power Spectrum In R, Allison A. Scheppelmann, Deborah J. Bard

STAR Program Research Presentations

Weak gravitational lensing is an important tool in understanding the large-scale structure of the universe. One component in understanding the effect of weak gravitational lensing is the shear correlation function and matter power spectrum. The calculation of these values is often complicated and time consuming. In order to decrease the cost of these calculations they were implemented in R using parallelization. This resulted in the calculations completing faster and the process to be easily changed in order to fit the need of each researcher using the algorithms created in R.

An Efficient Second Order In Time Scheme For Approximating Long Time Statistical Properties Of The Two Dimensional Navier-Stokes Equations, Xiaoming Wang

Mathematics and Statistics Faculty Research & Creative Works

We investigate the long-time behavior of the following efficient second order in time scheme for the 2D Navier-Stokes equations in a periodic box: The scheme is a combination of a 2nd-order in time backward-differentiation and a particular explicit Adams-Bashforth treatment of the advection term. Therefore, only a linear constant coefficient Poisson solver is needed at each time step. We prove uniform in time bounds on this scheme in L 2, H per1 and H per2 provided that the time-step is sufficiently small. These time uniform estimates further lead to the convergence of long-time statistics (stationary statistical properties) of the scheme …

Oscillation And Spectral Theory For Linear Hamiltonian Systems With Nonlinear Dependence On The Spectral Parameter, Martin Bohner, Werner Kratz, Roman Šimon Hilscher

Mathematics and Statistics Faculty Research & Creative Works

In this paper, we consider linear Hamiltonian differential systems which depend in general nonlinearly on the spectral parameter and with Dirichlet boundary conditions. Our results generalize the known theory of linear Hamiltonian systems in two respects. Namely, we allow nonlinear dependence of the coefficients on the spectral parameter and at the same time we do not impose any controllability and strict normality assumptions. We introduce the notion of a finite eigenvalue and prove the oscillation theorem relating the number of finite eigenvalues which are less than or equal to a given value of the spectral parameter with the number of …

From Unbiased Numerical Estimates To Unbiased Interval Estimates, Baokun Li, Gang Xiang, Vladik Kreinovich, Panagios Moscopoulos

Departmental Technical Reports (CS)

One of the main objectives of statistics is to estimate the parameters of a probability distribution based on a sample taken from this distribution. Of course, since the sample is finite, the estimate X is, in general, different from the actual value x of the corresponding parameter. What we can require is that the corresponding estimate is unbiased, i.e., that the mean value of the difference X - x is equal to 0: E[X] = x. In some problems, unbiased estimates are not possible. We show that in some such problems, it is possible to have interval unbiased estimates, i.e., …

Modeling Daily Power Demand In Southern Kentucky: A Single Household Approach, Craig M. Dickson

Masters Theses & Specialist Projects

In this study, we use a nonparametric technique, locally weighted robust least squares regression (LOESS), to forecast a 24 hour demand profile at the household level and compare it to existing aggregate demand models discussed in literature. Of these aggregate demand models, a quadratic autoregressive model was selected to be used as a basis for comparison with the LOESS forecasts. It was our goal to automate the forecasting process by using the goodness of fit metric, AICCI, for smoothing parameter selection. The statistical workflow was executed using SAS and data was provided by the Glasgow Electric Plant Board of Barren …

Significant Themes In 19th-Century Literature, Matthew L. Jockers, David Mimno

Department of English: Faculty Publications

External factors such as author gender, author nationality, and date of publication affect both the choice of literary themes in novels and the expression of those themes, but the extent of this association is difficult to quantify. In this work, we apply statistical methods to identify and extract hundreds of "topics" from a corpus of 3,346 works of 19th-century British, Irish, and American fiction. We use these topics as a measurable, data-driven proxy for literary themes. External factors may predict fluctuations in the use of themes and the individual word choices within themes. We use topics to measure the evidence …

Pastoral Lease Assessment Using Geospatial Analysis, T P. Robinson, P E. Novelly, R Corner, Philip Thomas, A Russell-Browm

Resource management technical reports

Seven remote sensing based Vegetation Indices (NDSVI, STVI-3, NDVI, Green + Red, Red, Land Monitor and STVI-1) were tested for their potential to discriminate between “poor” and “good” range condition assessments in Western Australia’s pastoral rangelands. Indices were computed using the Australian Greenhouse Office National Carbon Accounting System (AGO NCAS) repository of calibrated Landsat TM/ETM+ mosaics. Discrimination potential was assessed at two levels of stratification – station level (identical to the stratification used to collect the traverse data), and functional group level (an aggregation of similar land systems);

Fall In C-Peptide During First 2 Years From Diagnosis: Evidence Of At Least Two Distinct Phases From Composite Type 1 Diabetes Trialnet Data., Carla J. Greenbaum, Craig A. Beam, David Boulware, Stephen E. Gitelman, Peter A. Gottlieb, Kevan C. Herold, John M. Lachin, Paula L. Mcgee, Jerry P. Palmer, Mark D. Pescovitz, Heidi Krause-Steinrauf, Jay S. Skyler, Jay M. Sosenko

Epidemiology Faculty Publications

Interpretation of clinical trials to alter the decline in β-cell function after diagnosis of type 1 diabetes depends on a robust understanding of the natural history of disease. Combining data from the Type 1 Diabetes TrialNet studies, we describe the natural history of β-cell function from shortly after diagnosis through 2 years post study randomization, assess the degree of variability between patients, and investigate factors that may be related to C-peptide preservation or loss. We found that 93% of individuals have detectable C-peptide 2 years from diagnosis. In 11% of subjects, there was no significant fall from baseline by 2 …

Genetic Susceptibility To Type 2 Diabetes: A Global Meta-Analysis Studying The Genetic Differences In Tunisian Populations, Rym Berhouma, S. Kouidhi, M. Ammar, H. Abid, T. Baroudi, H. Ennafaa, A. Benammar-Elgaaied

Human Biology Open Access Pre-Prints

The present study is the first meta-analysis to evaluate type 2 diabetes (T2D) - associated polymorphisms in cohorts originated from several Tunisian regions. In fact, we evaluated the effect of seven polymorphisms in the following genes; PPARg ( Pro12Ala), TNFα (-308A/G), ENPP1(K121Q), TCF7L2(rs7903146 C/T), MTHFR( C677T), ACE(I/D), CAPN10(3R/2R) on T2D risk, through a meta-analysis combining data of previous studies performed on Tunisian populations originating from the north, centre or south of the country. R statistics version 2.12.1 software was used to estimate the heterogeneity between studies. Pooled ORs were computed by the fixed-effects method of Mantel-Haenszel if no heterogeneity between …

Modeling And Mathematical Analysis Of Plant Models In Ecology, Eric A. Eager

Department of Mathematics: Dissertations, Theses, and Student Research

Population dynamics tries to explain in a simple mechanistic way the variations of the size and structure of biological populations. In this dissertation we use mathematical modeling and analysis to study the various aspects of the dynamics of plant populations and their seed banks.

In Chapter 2 we investigate the impact of structural model uncertainty by considering different nonlinear recruitment functions in an integral projection model for Cirsium canescens. We show that, while having identical equilibrium populations, these two models can elicit drastically different transient dynamics. We then derive a formula for the sensitivity of the equilibrium population to …

Bayesian Adaptive Designs For Early Phase Clinical Trials, Chunyan Cai

Dissertations and Theses (Open Access)

My dissertation focuses mainly on Bayesian adaptive designs for phase I and phase II clinical trials. It includes three specific topics: (1) proposing a novel two-dimensional dose-finding algorithm for biological agents, (2) developing Bayesian adaptive screening designs to provide more efficient and ethical clinical trials, and (3) incorporating missing late-onset responses to make an early stopping decision.

Treating patients with novel biological agents is becoming a leading trend in oncology. Unlike cytotoxic agents, for which toxicity and efficacy monotonically increase with dose, biological agents may exhibit non-monotonic patterns in their dose-response relationships. Using a trial with two biological agents as …

The Gaise College Report: The American Statistical Association Meets Sound Pedagogy In Central Virginia, Beverly Wood

Publications

Research in undergraduate statistics education often centers on the introductory course required for a large percentage of college students. While acknowledging the diverse setting, audience, and purpose of introductory courses, existing research assumes that courses offered by different disciplines share the same goals and teaching practices. The purpose of this study is to examine the objectives for student outcomes and pedagogical delivery of introductory statistics courses in various academic departments to provide explicit evidence for this assumption. The American Statistical Association’s Guidelines for Assessment and Instruction in Statistics Education (GAISE) are meant to apply to all introductory courses. The College …

Analysis Of Bank Failure And Size Of Assets, Guancun Zhong

UNLV Theses, Dissertations, Professional Papers, and Capstones

The financial health of the banking industry is an important prerequisite for economic stability and growth. Bank failures in the United States have run in cycles largely associated with the collapse of economic bubbles. The number of bank failures has increased dramatically over the last thirty years (Halling and Hayden, 2007). In this thesis, we try to address the following two questions: 1) What is the relationship, if any, between a bank's asset size and its likelihood of failures? 2) How can we use statistical tools to predict the numbers of bank failures in the future? Various modeling techniques are …

Mathematics And The Hunger Games, Michael A. Lewis

Journal of Humanistic Mathematics

The Hunger Games plot features a dystopian future in which twelve outer districts are oppressed by a centralized capital. The story focuses on the heroism of a sixteen-year-old girl named Katniss and how she tries to rise above the oppression that she experiences. It also features a special lottery and other twists that are sources of mathematical interest. This essay focuses on some of the mathematical issues raised by The Hunger Games in an effort to show that this story can be used to teach students (as well as other interested parties) some important concepts from mathematics.