Biological and Chemical Physics Commons^™

Intersecting Physics And Medicine Through Computed Tomography, Christopher Wengert, Madouna Barsoum, Dominick Dingus

Student Scholar Symposium

Computed Tomography (CT) imaging is a cornerstone of modern medicine. Enabling detailed internal imaging for diagnostic and therapeutic applications. This project explores the physics underlying CT imaging, highlighting how fundamental principles of physics integrate seamlessly with medical advancements. We will examine X-Ray generation, attenuation, and image reconstruction, demonstrating how varying tissue densities influence scan results. The role of mathematical algorithms, such as filtered back protection and iterative reconstruction, will be discussed in relation to image clarity and radiation does optimization.

Additionally, we will address the balance between image resolution and patient safety, emphasizing the importance of minimizing radiation exposure while …

Microcanonical Analysis Of Semiflexible Homopolymers With Variable Bending Potential Width, Michael Gray

Scholars Week

I have developed an algorithm for finding phase transition in microcanonical data of simulations of homopolymers. These simulations model the behavior of homopolymers in an array of different conditions. This algorithm is generalized and can be applied to a variety of different systems. It works by taking repeated derivatives of the microcanonical entropy of the system and applying several filters, whose parameters are tuned algorithmically as well. Identification of phase transitions allows for the construction of a phase diagram.

Langevin Dynamic Models For Smfret Dynamic Shift, David Frost, Keisha Cook Dr, Hugo Sanabria Dr

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Impacts And Applications Of Vegetable Glycerin On Nanocellulose, Elise Hong-Miller, Dylan Seiffert, T. E. Kidd

Summer Undergraduate Research Program (SURP) Symposium

Nanocellulose is created by breaking down cellulose, the most common organic molecule found in nature. Nanocellulose has attractive properties, such as a very high strength-to-weight ratio, for many different applications. A major challenge is that nanocellulose has a very high shrinkage % (~90%) when it is dried, as well as a strong probability to crack. Different additives can be added in varying amounts to either mitigate or intensify these aspects, as well as affect its drying conditions. This investigation is helping the National Aeronautics and Space Administration (NASA) and the U.S. Army to find a use for this highly renewable …

Flow Through Processing Of Nanocellulose For Space Exploration Applications, Dylan Seiffert, T. E. Kidd

Summer Undergraduate Research Program (SURP) Symposium

Nanocellulose is synthesized from cellulose, which is the most abundant organic molecule found in nature. Nanocellulose solids are biodegradable and have a strength-to-weight ratio eight times that of steel¹. The production of nanocellulose solids is challenging due to the large volume loss that occurs during the curing process as well as the time and cost associated with ultrasonic processing. The loss of volume during curing often results in cracking and deformation of the cured solid. The issues caused by the large volume loss can be mitigated using additives that do not compromise the strength, shape, or machineability of …

Molybdenum Disulfide (Mos₂) As A Nanocellulose Substrate, Mariana Torres, Dylan Seiffert, Elise Hong-Miller, T. E. Kidd

Summer Undergraduate Research Program (SURP) Symposium

Cellulose is a substance abundant in nature, found in fruits and vegetables, plant cell walls (National Center for Biotechnology Information, 2023), and wood (Sjostrom, 1993). The abundance of cellulose is attributable to its linear chemical structure, as it is composed of long strands of glucose molecules linked together by hydrogen atoms, which enable the substance to withstand significant pressure without breaking (Rongpipi et al., 2019). This property—known as high tensile strength—is joined by its non-toxicity and sustainability, given cellulose may be degraded and renewed naturally (Kaur, 2021). These various properties indicate versatility, and its resultant current and desired uses—such as …

An Ab Initio Computation Of The Potential Energy Surfaces Of The Dna Bases, Anjali F. Filinovich, Vola Andrianarijaona

Campus Research Month

The potential energy surfaces of atoms in DNA can be analyzed and compared to show how their bonds break. This DNA potential energy reference data is very useful to understanding how DNA damage occurs, however, a dataset of relevant potential energy surfaces is not available for scientific use. We obtain the potential energy surfaces of various atoms in the four DNA bases adenine, thymine, guanine, and cytosine, by moving an atom in these molecules in three orthogonal directions using ORCA, an ab initio quantum chemistry software. Density functional theory is
used to compute potential energies as an atom is moved, …

United Properties Of Single-Origin Chocolates, Joseph Cooney

Student Research Symposium

In small production facilities, such as those used to manufacture single origin chocolate, cocoa nibs are ground to reduce the particle size to levels below 20 microns. This is a very important step during chocolate production, since chocolates with particles greater than 20 microns will have a grainy texture and unacceptable mouthfeel. The objective of this research was to evaluate changes in viscosity during chocolate grinding as affected by chocolate formulation. Three different types of chocolates were evaluated: 70% dark, 50% milk, and a Swiss-style milk chocolate. Chocolates were processed in a stone grinder and samples were taken as a …

Seizure Prediction In Epilepsy Patients, Gary Dean Cravens

NSU REACH and IPE Day

Purpose/Objective: Characterize rigorously the preictal period in epilepsy patients to improve the development of seizure prediction techniques. Background/Rationale: 30% of epilepsy patients are not well-controlled on medications and would benefit immensely from reliable seizure prediction. Methods/Methodology: Computational model consisting of in-silico Hodgkin-Huxley neurons arranged in a small-world topology using the Watts-Strogatz algorithm is used to generate synthetic electrocorticographic (ECoG) signals. ECoG data from 18 epilepsy patients is used to validate the model. Unsupervised machine learning is used with both patient and synthetic data to identify potential electrophysiologic biomarkers of the preictal period. Results/Findings: The model has shown states corresponding to …

A Neutral Model Of 100 Million Years Of Chromosome Inversions In The Yeast Genus Lachancea, Brian Clark

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Therapeautic Cerium Oxide Nanoparticles, Angel E. Vasquez

Symposium of Student Scholars

The overall goal of the research project is to create a glass that produces cerium oxide nanoparticles and as an efficient delivery mechanism. Cerium is able to exist as Ce3+ and Ce4+ because it has two partially filled subshells. This coexistence allows cerium oxide to have antioxidant properties that reduce the number of free radicals in that body that are associated with cancer, diabetes, and neurodegenerative diseases. In our laboratory, using a soluble borate glass, cerium oxide nanoparticles are created to coexist in Ce3+ and Ce4+ valences This borate glass composition is doped with different amounts of Cerium(IV) Oxide and …

Sustainable And Biodegradable Nanocellulose Composite Materials, Jacob Scheel, Tim Kidd Ph.D.

Summer Undergraduate Research Program (SURP) Symposium

Nanocellulose is made from a mixture of cellulose powder, and a variety of different materials and liquids. Unfortunately the cost to produce nanocellulose isn’t ideal, thanks to shrinkage. The goal of my research this year was to try to make nanocellulose more cost effective, by reduce shrinkage.

Electrochemical And Spectroscopic Characterization Of Cerium Salts And Nanoceria Material, Emily Velarde, Wei Zhou

Symposium of Student Scholars

The nanoscale form of cerium oxide, nanoceria (nano-CeO_x), has drawn great attention in recent years in electrochemical, nanomaterial research and medicinal studies due to its antibacterial properties, UV absorption, and its biochemical function as possible radical scavenger. Many new synthesis methods have achieved uniform and biocompatible nanoceria particles, and our lab has created cerium oxide particles that shows UV/Vis. absorption and X-ray patterns similar to the commercial nanoceria and nanoceria made in other research laboratories with novel synthetic methods.

This study focuses on charactering and comparing electrochemical properties of cerium inorganic salts and synthesized nanoceria. Preliminary results …

Remotely Controlled Enzyme Behavior Using Localized Thermal Gradients, Sarah Brown

UNO Student Research and Creative Activity Fair

No existing model describes an identified special case of enzyme behavior when directly stimulated with thermal energy via an RF field.

The ability to remotely influence cellular functions and outcomes is a new approach to targeted medicine. Nano-medicine and biotechnology are the future of medical diagnostics and treatment. The ability to remotely influence cellular functions and outcomes is a new approach to targeted medicine. Direct heating of an enzyme vs bulk heating changes the enzyme activity.

I tested how direct transfer of thermal energy changes rates of enzyme reactions. We created samples of enzymes, attached to ferrous (magnetic) nano-particles, and …

Improving Temperature Control For Studying Lipid-Ion Channel Biophysics, Judah Manoraj, Loren Haarsma

Summer Research

• Cell membranes are made up of lipid bilayers that protect the cell and its contents.
• Ion channels are proteins in the lipid bilayer that allow ions to flow in and out of the cell.
• We can measure changes in electrical current as a function of time when a single ion channel in an artificial bilayer opens and closes.
• Ion channels open and close randomly with characteristic “dwell times” which are exponentially distributed.
• One of the main goals is to determine how these exponential time constants (tau) change with temperature and lipid type.

Emergence, Mechanics, And Development: How Behavior And Geometry Underlie Cowrie Seashell Form, Michael G. Levy, Michael R. Deweese

Biology and Medicine Through Mathematics Conference

No abstract provided.

Analog Implementation Of The Hodgkin-Huxley Model Neuron, Zachary D. Mobille, George H. Rutherford, Jordan Brandt-Trainer, Rosangela Follmann, Epaminondas Rosa

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Period Drift In A Neutrally Stable Stochastic Oscillator, Kevin Sanft

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Combined High-Speed Single Particle Tracking Of Membrane Proteins And Super-Resolution Of Membrane-Associated Structures, Hanieh Mazloom Farsibaf, Keith A. Lidke

Shared Knowledge Conference

Many experiments have shown that the diffusive motion of lipids and membrane proteins are slower on the cell surface than those in artificial lipid bilayers or blebs. One hypothesis that may partially explain this mystery is the effect of the cytoskeleton structures on the protein dynamics. A model proposed by Kusumi [1] is the Fence-Picket Model which describes the cell membrane as a set of compartment regions, each ~ 10 to 200 nm in size, created by direct or indirect interaction of lipids and proteins with actin filaments just below the membrane. To test this hypothesis, we have assembled a …

Study Of The Visual Adaptation Mechanism In Marine Species With The Change Of Habitation Depth., Demid Osipov, Daniil Moshnikov

The International Student Science Fair 2018

The goal of our work was to determine the principal mechanisms that provide the difference in visual perception of two marine species that live on different depths: T. Pacificus and O. Vulgaris. In nature, visual perception of species that live deeper is shifted towards the blue region. This is related to the fact that red, orange and yellow light is absorbed more strongly by water than the blue light. On the other hand, the visual perception spectrum of an animal is determined by the absorption spectrum of the "light sensor" located in rods and cones of its eye retina. These …

Study Of The Visual Adaptation Mechanism In Marine Species With The Change Of Habitation Depth., Demid Osipov, Daniil Moshnikov

The International Student Science Fair 2018

The goal of our work was to determine the principal mechanisms that provide the difference in visual perception of two marine species that live on different depths: T. Pacificus and O. Vulgaris. In nature, visual perception of species that live deeper is shifted towards the blue region. This is related to the fact that red, orange and yellow light is absorbed more strongly by water than the blue light. On the other hand, the visual perception spectrum of an animal is determined by the absorption spectrum of the "light sensor" located in rods and cones of its eye retina. These …

Elucidating The Action Of A Regulatory Lipid Ligand Via Molecular Simulation: Cholesterol Swarms And The Inwardly Rectifying Potassium Channel, Belinda Akpa, Nicolas Barbera, Irena Levitan

Biology and Medicine Through Mathematics Conference

No abstract provided.

Thermodynamics Of An Evolving Gene Sequence, Brian Clark

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

The Behavior Response Of Antlion Larvae To Alternating Magnetic Fields, Lindsey Wagner, Caleb L. Adams

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

A Critical Firing Rate In Synchronous Transitions Of Coupled Neurons, Annabelle Shaffer, Epaminondas Rosa, Rosangela Follmann

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Mathematical Modeling Of Inhibitory Effects On Chemically Coupled Neurons, Nathhaniel Harraman, Epaminondas Rosa

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Temperature Effects On Neuronal Tonic-To-Bursting Transitions, Manuela Burek, Epaminondas Rosa

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

A Brief History Of Neuroscience, Zachary Mobille, Epaminondas Rosa

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Optimization Of Cardiac Pacing Stimulation By Current Configuration –A Theoretical, Numerical And Experimental Study., Flavio H. Fenton, Hila Dvir, Neil Hardy

Biology and Medicine Through Mathematics Conference

No abstract provided.

Improving Sers-Based Readout Strategy For Biomarker Detecting Immunoassays, Joseph Smolsky

UNO Student Research and Creative Activity Fair

Detection and monitoring of disease biomarkers increases probability of successful disease treatment. Surface enhanced Raman scattering (SERS) has several advantages over conventional readout strategies utilized in detecting immunoassays. SERS provides a method for chemical characterization based on molecular vibrational spectra. Raman signals are typically weak and need to be enhanced. This can be done using plasmons in nanoparticles of noble metals, we use gold (Au). Molecules with known spectra, Raman reporter molecules (RRM), can be adsorbed to Au nanoparticles. This enhances the Raman signal of the RRM when illuminated by a laser of optimal wavelength. Adding antibodies to nanoparticles modified …