Other Oceanography and Atmospheric Sciences and Meteorology Commons^™

The Development Of A Fluorescence-Based Reverse Flow Injection Analysis (Rfia) Method For Quantifying Ammonium At Nanomolar Concentrations In Oligotrophic Seawater, William Abbott

USF Tampa Graduate Theses and Dissertations

The goal of this thesis was to adopt a reverse flow injection analysis (rFIA) technique to the fluorometric analysis of the reaction o-phthaldialdehyde (OPA) with ammonium, allowing accurate measurements of ammonium concentrations lower than the detection limit of the widely used indophenol blue (IPB) colorimetric method while accounting for the background fluorescence of seawater. Ammonium is considered an essential nutrient for primary productivity, especially in the nutrient depleted surface ocean where as the most reduced form of dissolved inorganic nitrogen, it is readily assimilated via metabolic pathways. Challenges in the quantification of ammonium require more sensitive analytical techniques for …

Influence Of Water Column Stratification And Nutrient Gradients On The Migratory Behavior Of The Red Tide Dinoflagellate, Karenia Brevis, Matthew Garrett

USF Tampa Graduate Theses and Dissertations

Diel vertical migration (DVM) can offer motile phytoplankton a competitive advantage over other phytoplankton species. DVM has been well documented in the harmful dinoflagellate, Karenia brevis; however, the extent to which changes in nutrient regimes and density stratification modify migration patterns has not been thoroughly investigated. A 2 m experimental column was constructed with sensors and sampling ports at four depths to obtain fluorescence and temperature measurements and discrete water samples. The environmental parameters of the experimental column represented temperature and nutrient conditions found on the West Florida Shelf (WFS), where Karenia blooms frequently occur. Results demonstrated a clear …

Dissolved Nutrient Distributions In The Gulf Of Mexico Following The Deepwater Horizon Oil Spill, Ashley Ann Parks

USF Tampa Graduate Theses and Dissertations

The Deepwater Horizon (DWH) oil spill in the Gulf of Mexico (GoM) in the spring of 2010 introduced 4.4 million of barrels of oil to the ecosystem. Some biodegradation of the oil occurs when microorganisms, particularly bacteria, metabolize the oil as a carbon source. During this process, the microbes also require nutrients for energy. An introduction of oil at this magnitude has the ability to induce large blooms of microbes, which in turn can affect nutrient concentrations. Microbial petroleum degradation decreases nutrient concentrations, whereas the microbial assimilation and decay of organic matter increase nutrient concentrations. This study assessed whether any …

Field Observations And Novel Methodologies For Carbon System Assessments In Coastal Waters, Bo Yang

USF Tampa Graduate Theses and Dissertations

Coastal zones receive massive terrestrial inputs of nutrients and organic matter, and play an important role in biogeochemical cycles. The interactions of river inputs, ocean currents, atmospheric exchanges, anthropogenic influences, and biologically active ecosystems make CO₂ system studies in coastal waters highly challenging. This work focuses on improving our understanding of the CO₂ system in coastal waters through (1) development of a new methodology for measurements of CO₂ system parameters in the field; (2) observations of large spatial and temporal CO₂ system variations in coastal waters; and (3) characterization of the influence of organics on CO …

Comparison Of Isotope-Based Biomass Pathways With Groundfish Community Structure In The Eastern Gulf Of Mexico, Sheri Ann Huelster

USF Tampa Graduate Theses and Dissertations

This study compared traditional community analysis with stable-isotope trophic analysis to define process-based trophic elements of community structure in the eastern Gulf of Mexico, and developed a predictive capability regarding changes to fish community structure that would be expected from increasing eutrophication. Specifically, it used an existing trawl survey program (SEAMAP) to compare invertebrate herbivore (sponge and sea urchin) isotopes with groundfish isotopes, and then compared the resulting spatial patterns with spatial variation in community structure, as identified by cluster analysis. The comparison was applied to seven NMFS survey zones that extended offshore from the Caloosahatchee River, FL northwest to …

Marine Viral Diversity And Spatiotemporal Variability, Dawn Goldsmith

USF Tampa Graduate Theses and Dissertations

Marine viruses are the most numerous biological entities in the ocean, with an estimated abundance of 4 x 10³⁰. They merit study not only because of their sheer abundance, but also because of the role they play in the Earth's biogeochemical cycles. Viral lysis of bacteria redirects the flow of nutrients among marine microbes, which ultimately affects the efficiency of the biological pump. Viral diversity is important because most viruses are host-specific. In preying on a certain type of bacteria, viruses affect the diversity and structure of the bacterial community, leading to changes in carbon and nutrient flows. …

Spatial And Temporal Extent Of A Subsurface Hydrocarbon Intrusion Following The Deepwater Horizon Blowout, Kathleen Watson

USF Tampa Graduate Theses and Dissertations

The Deepwater Horizon (DWH) oil spill in the Gulf of Mexico (GoM) released an estimated 4.9 million barrels of oil between April 20, 2010 and July 15, 2010. An estimated 36% of the oil formed a neutrally buoyant intrusion, containing both dissolved compounds and oil microdroplets, between 1000 and 1300 m depth. This study used geographic information systems software, and data from water samples that were collected as part of the National Resource Damage Assessment (NRDA), to determine that an area of at least 1,600 km² was exposed to DWH oil. Toxic BTEX (benzene, toluene, ethylbenzene, and …

Improving Spectrophotometric Carbon System Measurements, Mark Patsavas

USF Tampa Graduate Theses and Dissertations

This work provides improved procedures for spectrophotometric carbon system measurements. Indicator dyes used for routine spectrophotometric pH measurements in seawater suffer from impurity issues, which introduce vendor-specific systematic errors in pH determinations. The magnitude of these errors for several vendors was investigated for meta Cresol Purple (mCP) and Cresol Red (CR). Flash chromatography procedures were developed to obtain purified mCP and CR on a bulk scale in order to supply the oceanographic research community with the indicators. Easy access to the purified indicators ensures global intercomparability of spectrophotometric pH determinations.

Internal consistency of marine inorganic carbon system measurements was studied …

Influence Of Diet On Element Incorporation In The Shells Of Two Bivalve Molluscs: Argopecten Irradians Concentricus And Mercenaria Mercenaria, William Noland Elsaesser

USF Tampa Graduate Theses and Dissertations

Recently, biogenic carbonates have received much attention as potential proxies of environmental change; however, a major pathway of elemental incorporation is often overlooked when making interpretations or designing experiments. This research experimentally examines the influence of diet on elemental composition in juvenile shells of the bay scallop, Argopecten irradians concentricus, and the northern quahog, Mercenaria mercenaria.

Exploratory trials were conducted using Argopecten irradians concentricus juveniles fed different algal diets: Isochrysis, Chaetoceros, Pavlova, Tetraselmis, or a mix of all four in a 2:1:2:2 ratio. No differences between the left and right valves were revealed, thus, subsequent analysis of the dietary influence …

Epibenthic Mobile Invertebrates Along The Florida Reef Tract: Diversity And Community Structure, Kristin Netchy

USF Tampa Graduate Theses and Dissertations

Benthic mobile invertebrates are important components of coral-reef diversity and community structure, though, in most cases, their ecological contributions are poorly known. Baseline information on their diversity, prevalence, assemblages, and ecological roles is needed to aid in the conservation of coral-reef habitats. The objectives of this study are to 1) describe diversity and assemblages of epibenthic, mobile invertebrates in shallow water coral-reef communities in Florida, 2) evaluate their ecological roles by reviewing published literature on diet, and 3) measure the degree of linear dependence between mobile invertebrates and scleractinian corals. Underwater surveys were conducted in the summer of 2013 at …

Impacts Of The Anomalous Mississippi River Discharge And Diversions On Phytoplankton Blooming In Northeastern Gulf Of Mexico, Brendan O'Connor

USF Tampa Graduate Theses and Dissertations

On April 20, 2010 a tragic explosion aboard the Deepwater Horizon (DWH) drilling rig marked the beginning of one of the worst environmental disasters in history. For 87 days oil and gas were released into the Gulf of Mexico. In August 2010, anomalous phytoplankton activity was identified in the Northeastern Gulf of Mexico, using the Fluorescence Line Height (FLH) ocean color product. The FLH anomaly was bound by approximately 30-28 degrees North and 90 and 86 degrees West and there was a suggestion that this anomaly may have occurred due to the presence of oil. This study was designed to …

The Combined Effects Of Light And Temperature On Coral Bleaching: A Case Study Of The Florida Reef Tract Using Satellite Data, Brian Burnel Barnes

USF Tampa Graduate Theses and Dissertations

Coral reefs are greatly impacted by the physical characteristics of the water surrounding them. Incidence and severity of mass coral bleaching and mortality events are increasing worldwide due primarily to increased water temperature, but also in response to other stressors. This decline in reef health demands clearer understanding of the compounding effects of multiple stressors, as well as widespread assessment of coral reef health in near-real time.

Satellites offer a means by which some of the physical stressors on coral reefs can be measured. The synoptic spatial coverage and high repeat sampling frequency of such instruments allow for a quantity …

Gradients In Season, Latitude, And Sea Ice: Their Effect On Metabolism And Stable Isotopic Composition Of Antarctic Micronekton, Erica H. Ombres

USF Tampa Graduate Theses and Dissertations

Respiration, metabolic enzyme assays, and body composition parameters were measured in the Antarctic krill Euphausia superba during the summer, fall and winter on the Western Antarctic Peninsula (WAP). E. superba of all sizes decrease their metabolism from the summer to the winter. These same parameters were also measured along the WAP during the austral fall 2010. E. superba's enzyme activity indicated that there was a latitudinal gradient to the decline in metabolism along the WAP with the more northerly sites having significantly higher metabolic enzyme activities than the sites to the south.

Carbon (δ¹³C) and nitrogen (δ^{15 …}

Light-Environment Controls And Basal Resource Use Of Planktonic And Benthic Primary Production, Kara Radabaugh

USF Tampa Graduate Theses and Dissertations

Consumers in marine and estuarine environments have a strong reliance on planktonic and benthic primary production. These two basal resources form the foundation of aquatic food webs, yet the abundance of phytoplankton and benthic algae are frequently inversely related due to competition for light and nutrients. As a result, optimal habitats for benthic and planktonic consumers vary spatially and temporally. To investigate these trends, three studies were conducted focusing on light attenuation and basal resources in a bay, river, and on a continental shelf.

δ¹³C and δ¹⁵N stable isotopes can be used as endogenous tracers to …

The Spectrophotometric Analysis Of Lead Carbonate Complexation And Carbonate Saturation States In Seawater, Regina Anita Easley

USF Tampa Graduate Theses and Dissertations

The carbon dioxide (CO₂) system is the primary buffer in seawater which controls oceanic pH. Changes in the marine CO₂ system affect a number of processes such as metal speciation, mineral saturation states, auditory responses in fish, and primary productivity rates. Increased atmospheric concentrations of CO₂ from human activities (e.g. burning of fossil fuels, deforestation, and cement production) has led to a global decrease in surface ocean pH termed anthropogenic ocean acidification. One particular concern in response to increased oceanic CO₂ is a substantial decrease in the calcium carbonate (CaCO₃) saturation states, Ω …

Hearing And Echolocation In Stranded And Captive Odontocete Cetaceans, Danielle Greenhow

USF Tampa Graduate Theses and Dissertations

Odontocetes use echolocation to detect, track, and discriminate their prey, as well as negotiate their environment. Their hearing abilities match the frequency of greatest sensitivity to the higher frequencies used for foraging and navigation. Hearing and echolocation together provide odontocetes with a highly developed biosonar system. This dissertation examines the hearing ability of several odontocete species to understand what signals they can perceive during echolocation. The variability in hearing ranges between species is examined in the context of phylogenetic and ecological differences among taxa. An autonomous hydrophone array is also developed that could be used in an expanded form in …

Polybrominated Diphenyl Ethers In Sediments Within The Hillsborough Bay Watershed, Candice Simmons

USF Tampa Graduate Theses and Dissertations

Polybrominated diphenyl ethers (PBDEs) are a widely used class of flame retardants that are important sources for contamination in the marine environment. Sediments serve as a large reservoir for PBDEs due to their large sorption capacity. This research assessed the presence and distribution of PBDEs in Hillsborough Bay, a subdivision of Tampa Bay, FL, by determining levels in surface sediment samples, creating a historical profile of the contaminant in a sediment core taken from within the bay, and investigating sediment characteristics that control their distribution. Compositional patterns and temporal distributions of 8 of the 209 congeners of PBDEs (BDE-28, -47, …

Investigations For Utilizing Pteropods As Bioindicators Of Environmental Change Along The Western Antarctic Peninsula, Paul Mark Suprenand

USF Tampa Graduate Theses and Dissertations

Pteropods are holoplanktonic gastropod molluscs found globally. Although species diversity is greater at lower latitudes, species abundance is greater at temperate and polar latitudes. Declines in pteropod populations have not only been correlated to declines of their major predators, but pteropods have also been used as bioindicators of global environmental changes such as ocean acidification. With high latitude abundances, pteropods provide significant sustenance for species such as the Atlantic salmon in the Atlantic Ocean and Pleuragramma antarcticum in the Southern Ocean. Because pteropods eat phytoplankton and other pteropods, factors that affect pteropod abundance influence many trophic levels. This dissertation explores …

Structure And Function Of Pinniped Vibrissae, Christin Taylor Murphy

USF Tampa Graduate Theses and Dissertations

The vibrissal system of pinnipeds relies on sturdy, specialized vibrissae and supporting neural architecture apparently designed for the reception of waterborne disturbances. Although it is known that pinnipeds can use their vibrissae for fine-scale tactile discrimination and hydrodynamic detection, many aspects of vibrissal function remain poorly understood. The present work examined the adaptive significance of vibrissal structure, the sensitivity of the vibrissal system, and the signals received by this system. All of these points were considered with respect to their function in hydrodynamic reception. Four methods of study: laser vibrometry, computed tomography (CT) scanning, psychophysical testing and animal-borne tagging were …

Harmful Algal Blooms Of The West Florida Shelf And Campeche Bank: Visualization And Quantification Using Remote Sensing Methods, Inia Mariel Soto Ramos

USF Tampa Graduate Theses and Dissertations

Harmful Algal Blooms (HABs) in the Gulf of Mexico (GOM) are natural phenomena that can have negative impacts on marine ecosystems on which human health and the economy of some Gulf States depends. Many of the HABs in the GOM are dominated by the toxic dinoflagellate Karenia brevis. Non-toxic phytoplankton taxa such as Scrippsiella sp. also form intense blooms off the Mexican coast that result in massive fish mortality and economic losses, particularly as they may lead to anoxia.

The main objectives of this dissertation were to (1) evaluate and improve the techniques developed for detection of Karenia spp. blooms …

Investigation Of Colored Dissolved Organic Matter (Cdom) Optical Properties, Nutrients, And Salinity In Coastal Florida: Springshed To Estuaries, Ana Rosa Arellano

USF Tampa Graduate Theses and Dissertations

Optical parameters measured via absorption spectroscopy and high-resolution fluorescence spectroscopy were used to characterize dissolved organic matter (DOM) in the springshed of Kings Bay, a spring-fed estuary located on Florida's Springs Coast. Over the past 40 years, springs supplying groundwater to Kings Bay have shown an increase in nitrate concentration. The overall goal of this project was to fingerprint wells and spring sites with elevated nitrogen concentrations using CDOM optical properties and establish relationships between nutrient and optical parameters. Samples were obtained from various sites: springs, Kings Bay surface (KBS), wells, coastal waters in and at the mouth of Crystal …

Metabolism In Corals From Antarctica, The Deep-Sea, And The Shallow Subtropics: Contrasts In Temperature, Depth, And Light, Lara Henry

USF Tampa Graduate Theses and Dissertations

Coral habitats span the range from tropical to polar, extremely shallow to thousands of meters deep. The differences in light and temperature experienced in these varied habitats likely affect the metabolic rates of the corals residing there. The metabolism of three coral species from different habitats have been examined to elucidate the effects of these environmental parameters on metabolism, an under-studied aspect of coral biology. For all three species, measurements of oxygen uptake, ammonium excretion, and activity of the enzymes lactate dehydrogenase (LDH), malate dehydrogenase (MDH), and citrate synthase (CS) were used to characterize their metabolism. Off Florida's Gulf coast, …

Chlorophyll Fluorescence And Thermal Stress In Archaias Angulatus (Class Foraminifera), Heidi M. Toomey

USF Tampa Graduate Theses and Dissertations

ABSTRACT

Benthic foraminifers that host algal symbionts are similar to corals in that they rely on their algal endosymbionts for their energy needs, calcify prolifically, and are sensitive to changes in environmental conditions. They are abundant in the benthos of coastal coral-reef areas and are found throughout the tropical and subtropical regions. Pulse Amplitude Modulated (PAM) chlorophyll fluorometry and chlorophyll a extraction techniques were used to quantify and compare the photosynthetic responses of the benthic foraminiferal, Archaias angulatus and their isolated endosymbionts, Chlamydomonas hedleyi, to short-term changes in temperature. Maximum quantum efficiency (F_v/F_m) and rapid …

Biochemical Aspects Of The Thermal Sensitivity And Energy Balance Of Polar, Tropical And Subtropical Teleosts, Eloy Martinez

USF Tampa Graduate Theses and Dissertations

The maintenance of a functional energy balance in ectothermic fauna could be challenging in a thermally disparate environment. Biochemical adaptations at the enzyme and membrane levels allows for a set compensatory mechanism that allow the individual to maintain an energetic surplus, thus allocating energy for growth and reproduction. The present work describes how the energetic machinery in the cell, particularly the mitochondrion, could be affected by temperature changes. More specifically, this work aimed to determine how environmental temperature affects the mitochondria energetic performance of fishes from disparate thermal regimes.

Mitochondrial ATP production efficiency was evaluated in fishes from polar, tropical …

Sediment Transport And Distribution Over Continental Shelves: A Glimpse At Two Different River-Influenced Systems, The Cariaco Basin And The Amazon Shelf., Laura Lorenzoni

USF Tampa Graduate Theses and Dissertations

The aim of this dissertation was to understand lithogenic suspended sediment transport mechanisms and distribution in two river-influenced margins: The Cariaco Basin, Venezuela, and the Amazon Shelf, Brazil. Lithogenic sediment input in the Cariaco Basin is controlled by small mountainous rivers (SMR), while in the Amazon Shelf it is dominated by the Amazon River, the largest river in the world in terms of freshwater discharge (~20% of global riverine discharge). Optical transmissometer measurements were coupled with particulate organic matter (POM) observations to understand changes in the geochemical composition of suspended sediment and spatial/temporal distributions over the two regions of interest. …

Production Of Bioactive Secondary Metabolites By Florida Harmful Bloom Dinoflagellates Karenia Brevis And Pyrodinium Bahamense, Cheska Burleson

USF Tampa Graduate Theses and Dissertations

Despite the critical role algae serve as primary producers, increases or accumulation of certain algae may result in Harmful Algal Blooms (HABs). Algal toxins from these blooms contribute significantly to incidences of food borne illness, and evidence suggests HABs are expanding in frequency and distribution. Mitigation of these HABs without knowledge of the ecological purpose and biochemical regulation of their toxins is highly unlikely. The production, function, and potential of secondary metabolites produced by the dinoflagellates Karenia brevis and Pyrodinium bahamense, were investigated.

Brevetoxins were demonstrated by two different methods to localize within the cytosol of Karenia brevis. …

A Study Of The Eastern Oyster, Crassostrea Virginica, In Tampa Bay: Effects Of Perkinsus Marinus On Reproduction And Condition, Bridgit Melora Mccrickard

USF Tampa Graduate Theses and Dissertations

Abstract

Five sites in Tampa Bay, Florida, were sampled monthly from February 2006 to January 2007. These sites were located at the mouth of the Alafia River, in an inlet of Cross Bayou, on the easement of Gandy Bridge, near mangrove in Manatee County, and an inlet of Salt Creek, off Bayboro Harbor. Standard methods were used to determine shell height and Condition Index (CI). Intensity and prevalence of Perkinsus marinus were analyzed using Ray's Thioglycollate medium test, while Haplosporidium nelsoni was studied by histological examination. Histological methods were also used to determine sex ratios, reproductive phases, and egg diameters. …

Florida Fishery-Wide Reproductive Indices Of Stone Crab, Menippe Mercenaria, And Their Application To Stock Assessment And Management, Claire Elizabeth Crowley

USF Tampa Graduate Theses and Dissertations

The stone crab, Menippe mercenaria, supported the third most valuable fishery in Florida in 2016. Declining catch per unit effort (CPUE) and overall negative trend in landings since 2000 have raised concerns among fisherman, researchers, and fishery managers about the resiliency of the fishery. The Florida Fish and Wildlife Research Institute estimated that the Florida stone crab fishery has been overexploited since 1997. Overexploited fisheries, such as the commercial stone crab fishery, risk induced changes in life history parameters, such as age at maturation and reproductive output. In turn, these population-level changes have the potential to reduce the spawning …

The Impacts Of Population Density, And State & National Litter Prevention Programs On Marine Debris, Melissa Rose Brogle

USF Tampa Graduate Theses and Dissertations

Marine debris is improperly disposed of solid waste, also called litter, which is deposited in the marine environment (NOAA, 2010). Litter prevention techniques such as fines, cleanups, incentives, and others, can help to decrease litter, and ultimately decrease marine debris. This research analyzed 2000 and 2010 International Coastal Cleanup (ICC) data obtained from The Ocean Conservancy to ascertain whether certain litter prevention techniques did reduce amounts and types of marine debris found in coastal areas. The litter prevention techniques analyzed included state bottle bills, voluntary monofilament fishing line recycling programs, and the Keep America Beautiful (KAB) cigarette butt litter prevention …

Evidence For Viral Infection In The Copepods Labidocera Aestiva And Acartia Tonsa In Tampa Bay, Florida, Darren Stephenson Dunlap

USF Tampa Graduate Theses and Dissertations

Mesozooplankton are of critical importance to marine food webs by transferring energy from the microbial food web to higher trophic levels and depositing energy to the deeper ocean layers through fecal deposition. While decades of research have shown that viruses have significant impacts in the oceans, and infect a wide range of organisms from bacteria to whales, there is still little known about the impacts of viruses on the mesozooplankton community. As copepods are the most abundant mesozooplankton group, this study sought to characterize the viruses present in natural populations of the calanoid copepods Acartia tonsa and Labidocera aestiva in …