Oceanography Commons^™

Modeling The Effects Of Low-Pressure Atmospheric Fronts On Sediment Transport Through Mississippi Sound Barrier Island Inlets, Nicholas J. Gagliano

Master's Theses

Coastal sediment dynamics in the Mississippi Sound are strongly influenced by tropical cyclones and the more frequent passage of low-pressure atmospheric fronts. While hurricanes are well recognized for reshaping barrier islands and altering sediment budgets, the cumulative role of recurrent fronts remains poorly quantified. This thesis investigates the impacts of six low-pressure atmospheric fronts (2015–2017) on sediment flux through six barrier island inlets in the Mississippi Sound.

A high-resolution application of the Regional Ocean Modeling System with the Community Sediment Transport Modeling System was developed to simulate tidal circulation, wind-driven currents, and sediment dynamics. Waves were excluded from the simulations. …

Isolation Of The 2019 Bonnet Carré Spillway Effects On The Habitat Suitability Of Brown Shrimp (Farfantepenaeus Aztecus) And Blue Crab (Callinectes Sapidus) Using A Modeling Approach, Mallory Dyson

Master's Theses

In 2019, an unprecedented flood year, the Bonnet Carré Spillway (BCS) was opened on two separate occasions (February 27^th to April 11^th, and May 10^th through July 27^th) diverting a volume 6 times the volume of Lake Pontchartrain into the surrounding coastal waters of Louisiana, Mississippi, and Alabama. The goal of this research was to determine the spatio-temporal influence of these freshwater releases on two economically and ecologically important species (Farfantepenaeus aztecus and Callinectes sapidus) with variable responses to salinity and temperature depending on the age class. The Habitat Suitability Index (HSI) …

Assessment Of Estuarine Respiration And Benthic Nutrient Fluxes In Mississippi Sound, Nur Pasha Sufian

Master's Theses

This study quantified seasonal and spatial variability of both water column and benthic respiration rates as well as benthic nutrient fluxes along the Mississippi Sound. Respiration was measured in recirculating incubation chambers using Firesting optical DO sensors (PyroScience GmbH), and changes in nutrient concentrations were assessed. Mean water column respiration rates ranged from 0.35 and 2.76 µM O₂ hr⁻¹, with the lowest rates in the winter and the highest in the summer while detectable nutrient concentrations (ammonium, (NH₄⁺), and soluble reactive phosphate (PO₄³⁻)) showed only slight decreases (< 1 µM) over all seasons. Sediment incubation chambers consistently had much greater oxygen declines than the water incubations and showed seasonal trends with the highest mean respiration rates measured in the summer and the lowest mean in the winter, with a range from 107.4 to 1514.9 µmol O₂ m⁻² hr⁻¹ (2.6 to 36.3 mmol O₂ m⁻² d⁻¹). Sediment incubations consistently showed increases in NH₄⁺ concentrations in the overlying water, resulting in calculated NH₄⁺ benthic flux rates of 0.73 to 379.01 µM N m⁻² hr⁻¹ with the lowest rates in the winter and highest rates in the summer. Although PO₄³⁻ concentrations were often below detection in cooler seasons, PO₄³⁻ flux also peaked during the summer (< 28.8 µmol P m⁻² hr⁻¹). In this study, temperature was a key regulator for estuarine respiration and benthic nutrient flux rates, and these rates were positively correlated with porewater nutrient concentrations and sedimentary organic matter. These findings illustrate that benthic respiration can contribute to water column hypoxia and that sediments serve as a source of nutrients to the water column. Overall, these findings provide us with valuable insight about the seasonal coupling of oxygen demand and nutrient flux in the Mississippi Sound and provide valuable baseline data for future biogeochemical modelling of hypoxia, eutrophication, and productivity.

Filling Gaps In Scientific Data Sets Using Physics Informed Neural Networks: A Case Study In Velocity Fields, Ellen Saunders

Master's Theses

Gaps in scientific data sets are a persistent issue for researchers in a variety of fields, and while nothing makes up for missing out on real data, well-simulated synthetic data can be a useful tool. In the world of image processing, machine learning techniques have become quite sophisticated at taking an image with a missing component and filling in that space with something believable. The aim of this thesis is to take machine learning techniques similar to what gets used in image processing and repurpose them to infill gaps in scientific data sets in a realistic manner. This thesis compares …

Vertical And Latitudinal Variability Of Marine Heatwaves In The California Current, Gavin M. Plume

Master's Theses

Marine heatwaves (MHWs) are increasing in frequency and intensity globally, with grave effects on marine ecosystems and their dependent industries. There are significant gaps in knowledge of the subsurface behavior and geographic distribution of MHWs, especially in eastern boundary upwelling systems like the California Current. Here, two decades of full water-column temperature observations from a shallow autonomous profiler in San Luis Obispo Bay (~10m) revealed that while MHWs have similar average durations and intensities across all depths, one-third of bottom MHWs occur without a concurrent surface signal. MHWs across the water column initiated during anomalously weak upwelling or downwelling conditions …

Modeling Hourly Storm Surges Using Deep Learning Techniques, Md Abu Zafor

Master's Theses

Storm surges cause coastal flooding, one of the most devastating coastal hazards. Accurate modeling of storm surges is essential for predicting and mitigating these impacts. Traditional approaches model surges at individual tide gauges and often focus on daily time scales, leading to data redundancy and limiting their ability to capture sub-daily variability. This study addresses these limitations using deep learning (DL) algorithms to model hourly surges simultaneously at multiple tide gauges along the U.S. East Coast and Gulf of Mexico. Three algorithms, Convolutional Neural Network (CNN), Long Short-Term Memory (LSTM), and a hybrid ConvLSTM are employed to model surges using …

Understanding The Variability Of Circulation And Water Quality At Experimental Oyster Leases In The Mississippi Sound Using A High-Resolution Nested Modeling Approach, Shihab Hossain Saran

Master's Theses

Four 50-acre experimental oyster leases; two near Saint Louis Bay (StLB) and two near Pascagoula Bay (PB) were recommended to provide science-based guidance for oyster reef restoration efforts in response to continued limited productivity of oysters in the Mississippi Sound (MSS). Two-way nested simulations using ROMS within COAWST modeling framework have been run with improved forcings to analyze circulation, salinity and temperature variability within and around the lease areas under the extreme freshwater inflow from Bonnet Carré Spillway (BCS) openings and local rivers in 2019. High-resolution atmospheric forcing data is crucial because diurnal sea-land breeze affects salinity variability by increasing …

Estimation Of Angular Response Curves Using A Phase Differencing Bathymetric Sonar, Kandice Gunning

Master's Theses

Although Multibeam Echosounders (MBES) backscatter products like Angular Response Curves (ARC) and mosaics have been used and applied to different sediment types as classification tools, little is known about the extraction and interpretation of ARCs using Phase Differencing Bathymetric Sonar Systems (PDBS). This thesis aims to use an across-track approach to develop a method for extracting ARCs from georeferenced bathymetric data using PDBS.

Three different data collection surveys were conducted using a PDBS operating at 540kHz. Using only the bathymetric data, initial ARCs from 3 different intensity classes (high, medium, and low) were successfully extracted, the results of which attempted …

The Tidal Prism, Viable Eelgrass Habitat, And The Effects Of Sea Level Rise In Morro Bay, Kaden A. Caliendo

Master's Theses

The tidal prism, or the volume of water exchanged from the sea to an estuary from mean low to mean high tide, influences system hydrodynamics and ecological functioning. Since 1884, the tidal prism in Morro Bay, California has been estimated to be decreasing over time due to sedimentation from upstream practices. What is the current tidal prism in Morro Bay and how will that change with sea level rise? How will eelgrass respond to rising sea levels?

For this study, inexpensive tidal gauges were deployed at four locations in Morro Bay from March to August 2023 to measure spatially varying …

Estimation Of Quantitative Genetic Parameters Of The Eastern Oyster (Crassostrea Virginica) In The Gulf Of Mexico, Heather King

Master's Theses

The decline of natural oyster reefs in Gulf of Mexico (Gulf) states has stimulated the development of aquaculture to support the industry and restoration programs. Gulf habitats feature diverse salinity environments that may require oysters bred for habitat-specific optimal genetic characteristics. In this work, genetic parameters for performance in habitats with different salinity were estimated. In September 2020, 102 males and 102 females sourced from 17 natural reefs across the northern Gulf were bred according to 2 males x 2 females non-overlapping factorial crossing designs, resulting in 204 full and half sibs. All families were pooled after fertilization according to …

Assessing Dynamics And Trends Of Co2 Flux On The Louisiana Shelf, Claire Mcguire

Master's Theses

The Gulf of Mexico on an annual timescale acts as a sink for ­CO₂. Previous studies have investigated regional-scale trends in the Gulf based on model output. In our investigation of the northern Gulf of Mexico, and especially the area surrounding the Louisiana delta, we found different trends compared with previous studies of the open ocean Gulf and broader shelf region. Predictions of global patterns of the ocean CO₂ cycle require regional studies of unique areas like the Louisiana Shelf. The Louisiana Shelf is a shallow system, has input from river systems, experiences seasonal hypoxia, and is …

Understanding The Impacts Of Topobathymetric Data On Storm Surge Model Predictions, Sydni Crain

Master's Theses

The topobathymetric characteristics of a region are regularly altered by natural and anthropogenic causes. This directly impacts the resulting storm surge during a hurricane. The primary goal of this research was to gain a better understanding of the impact that topography and bathymetry have on storm surge models, particularly the Advanced Circulation (ADCIRC) Model. Hurricane Zeta (2020) and Hurricane Ida (2021) were chosen as case studies; therefore, the Gulf of Mexico (GOM) was chosen as the study site. This research was completed by comparing ADCIRC storm surge results which were based on older, lower-resolution data with results derived from more …

Determining The Refractive Index Of Phytoplankton Via Direct Measurement Of Cellular Structures, Michael Kamowski

Master's Theses

The refractive index of phytoplankton has never been directly measured before despite its importance towards studying the optical characteristics of marine particles. Previous attempts to measure it have been done through indirect methods. While these methods have proven useful, they contain assumptions about the particles morphology and composition that cause for uncertainty with the measurements. Through the use of the 3D Cell Explorer, a high precision holotomographic microscope, the RI of phytoplankton can be directly measured for the first time. With volume measurements, the phytoplankton were found to not display a single bulk RI, instead the bulk RI was different …

Benthic Habitat Mapping Of Mountain Top Bank Within The Northern Gulf Of Mexico Through Integrated Geophysical And Visual Data Analysis, Bethany Pertain

Master's Theses

Mesophotic coral ecosystems (MCEs) are among the seafloor ecosystems that have been poorly studied throughout the world’s oceans, but they are a vital and diverse ecosystem that should be prioritized for future mapping and ecological studies. Priority should be given to them because they possess natural, social, and economic values, and face a variety of threats, all of which, if not better understood will result in the loss of this unique ecosystem. Insights into these ecosystems, among other deep-sea environments, are lacking due to difficulty accessing them, inherent lag between data collection by an autonomous system and observation by a …

Analysis Of Fossil Pollen From A Pleistocene Cypress Forest Preserved On The Northern Gulf Of Mexico Continental Shelf, Kathryn Joyce Garretson

Master's Theses

This study presents the findings of fossil pollen analysis performed on terrestrial sediments preserved on the northern Gulf of Mexico continental shelf (site hereafter known as the Underwater Forest or DF). This research aims to establish vegetation composition on a continental shelf glacial refuge and provide a better understanding of vegetation response to sea-level rise. Two cores (15DF1 and 15DF3B) located at different locations within the forest were recovered and analyzed. Pollen results from both cores were similar, with high percentages of Taxodium and Nyssa pollen in the lowermost sections reflecting an assemblage typical of contemporary baldcypress swamps. Pollen assemblages …

Understanding Biogeochemical And Physical Controls On Methane Air-Sea Exchange Fluxes In The Pacific Ocean, Sarah Raney

Master's Theses

Methane and trace element samples were collected on GEOTRACES GP15 Pacific Meridional Transect (PMT) cruise conducted between the Aleutian Islands (57 °N) and Tahiti (20 °S) from September to November 2018. Uncertainty in methane air-sea exchange fluxes was determined using a propagation of errors approach. Fluxes ranged from -0.88 to 4.9 µmol CH₄ m^-2 d^-1. Average CH₄ flux along the Alaskan margin was 2.2 ± 2.9 µmol CH₄ m^-2 d^-1. Methane fluxes decreased moving southward and increased to their open ocean maximum around 20 °N before declining in equatorial waters. Near …

Assessing The Rates Of Post-Depositional Change Within 2004 Indian Ocean Sediments: Implications For Long-Term Records Of Paleotsunamis, Lillian Pearson

Master's Theses

Foraminifera are commonly used to examine patterns of tsunami inundation occurring over centennial to millennial timescales, but the impacts of post-depositional change on geologic reconstructions are unknown. In Sumatra, the taphonomic character (i.e., test surface condition) of a foraminifer can deteriorate over time, rendering them unidentifiable, and even dissolve them entirely. Here I investigate the rates of post-depositional change of foraminiferal assemblages found within the 2004 Indian Ocean Tsunami (IOT) deposit over a 15-year time interval in Aceh, Indonesia in a vegetated open coastal plain (Site 1: Pulot) and an unvegetated protected coastal cave (Site 2). I identified two zones …

Small-Scale Resuspension And Redistribution Of Surface Sediments In The Northeast Gulf Of Mexico, Austin Harris

Master's Theses

Following the release of ~4.9 million barrels of oil into the Gulf of Mexico from the Macondo wellhead, a vast area of the seafloor contained recently deposited marine sediments contaminated by the oil spill. The initial deposition of these contaminated marine sediments was likely not the end of the journey for the particles. Downslope gravitational processes and events of increased current speed in the deep ocean setting can result in recently deposited sediments to resuspend and be moved laterally with the current flow, increasing the area effected by the oil spill. Erosion experiments performed in a closed-loop resuspension flume were …

Assessing The Recalibration Interval For Nearshore Sediment Assemblages After Hurricane Irma: Implications For Developing Long-Term Records Of Overwash Deposits, Stephen Mitchell

Master's Theses

Surface distributions are commonly collected to assist with overwash interpretation; however, many of these are first established immediately after a major overwash event as part of a post-event field survey. This study documents the impacts of Hurricane Irma, a Category 5 storm, on nearshore sediments off the coast of Anegada (British Virgin Islands) using distributions of Homotrema rubra, an encrusting foraminifer with a defined provenance in coral reef ecosystems. Over four sampling intervals spanning 2 years, from six months pre-Hurricane Irma to 18 months post-Hurricane Irma, surface sediment was collected from three shore-perpendicular transects on both the northern and …

Freshwater Endmembers Impacting Carbonate Chemistry In The Mississippi Sound, Allison Savoie

Master's Theses

Coastal ecosystems are highly dynamic areas for carbon cycling and are likely to be negatively impacted by increasing ocean acidification. This research focused on dissolved inorganic carbon (DIC) and total alkalinity (TA) in the Mississippi Sound in order to understand the influence of local rivers that supply alkalinity to the area and buffer against ocean acidification. This area receives large fluxes of freshwater from local rivers, in addition to episodic inputs from the Mississippi River through a human-built diversion, the Bonnet Carré Spillway. Sites in the Mississippi Sound were sampled monthly during August 2018 to November 2019 and at weekly …

The Variability Of High-Frequency Motions And Their Interactions With The Mesoscale On The Mississippi Shelf, Jordan Earls

Master's Theses

In this study, we examine the spatial and temporal variability of high-frequency and low-frequency motions across the Mississippi Shelf and how the high-frequency motions are modulated by low-frequency mesoscale motions. For this purpose, we use Acoustic Doppler Current Profiler (ADCP) measurements collected at nearshore (23 m), mid-shelf (60 m), and shelf break (88 m) stations. High-frequency motions are defined as motions with periods less than 36 hours, whereas mesoscale motions have larger periods. The collected datasets are analyzed through bandpass filtering, least square harmonic analysis, spectral analysis, and empirical orthogonal functions (EOF). We find that along-shelf barotropic mesoscale motions contain …

Carbonate Chemistry Characterization In A Low-Inflow Estuary With Recent Seagrass Loss, Jolie Higgins

Master's Theses

Estuaries are dynamic environments that are strongly affected by natural variability, as well as direct and indirect anthropogenic impacts. A better understanding of the drivers of carbon fluxes and biogeochemical variability in estuarine systems is needed, particularly with the increasing threat of ocean acidification. Morro Bay in Central California is a small nationally protected estuary, with seasonally low freshwater inputs. Since 2007, the bay has experienced a significant loss of native seagrass, Zostera marina, which is an important component of the marine ecosystem. Because seagrass photosynthesis decreases carbon dioxide and increases oxygen in the water column, the loss of seagrass …

Late Quaternary Evolution And Stratigraphic Framework Influence On Coastal Systems Along The North-Central Gulf Of Mexico, Usa, Robert Hollis

Master's Theses

Coastal systems in the Gulf of Mexico are threatened to reduced sediment supply, storm impacts and relative sea level rise (RSLR). The geologic record can provide insights of geomorphic threshold crossings (formation, progradation, transgression, destruction) to these forcing mechanisms to predict future barrier evolution to climate change. The stratigraphic framework and antecedent topography directly influence coastal evolution over geologic timescales. This study synthesizes ~2100km of geophysical data, 700+ sediment cores, and 63 radiocarbon dates to regionally map two sequence boundaries, multiple ravinement surfaces and fourteen depositional facies. One marine isotope stage (MIS) 6 valley’s fill provided up to 300 x10 …

The Utility Of Foraminifera In Documenting Sediment Provenance For Overwash Deposits: A Case Study Using Sediments Deposited By Tropical Cyclone Pam In Vanuatu, Thomas Kosciuch

Master's Theses

Tropical cyclone inundation is a major threat to the highly exposed islands of the South Pacific. This vulnerability was highlighted in March 2015 when Tropical Cyclone (TC) Pam made landfall on Vanuatu as a Category 5 storm, impacting coastlines with storm surges that produced high water marks up to 7 m above MSL and deposited sediments up to 400 m inland. We examined the foraminiferal assemblages contained within TC Pam sediments at two locations in Vanuatu: a mixed-carbonate embayment (Manuro), and a volcaniclastic beach (Port Resolution Bay; PRB). At Manuro, the TC Pam sediments were up to 10 cm thick …

Environmentally-Driven Variation In The Population Dynamics Of Gulf Menhaden (Brevoortia Patronus), Grant D. Adams

Master's Theses

Gulf Menhaden (Brevoortia patronus) is an abundant forage fish distributed throughout the Northern Gulf of Mexico (NGOM). Gulf Menhaden support the second largest fishery, by weight, in the United States and represent a key linkage between upper and lower trophic levels. Variation in the population dynamics can, therefore, pose consequences for the ecology and economy in the NGOM. Here we aim to understand variation in the individual and population dynamics of Gulf Menhaden throughout ontogeny and how such variation relates to environmental processes. We utilized a suite of fishery-dependent and –independent, remote sensing, modeled, and in situ data …

Age, Growth, And Reproduction Of Vermilion Snapper (Rhomboplites Aurorubens) In The North-Central Gulf Of Mexico, Trevor Dalton Moncrief

Master's Theses

Vermilion Snapper is a commonly harvested species of reef fish in the northern Gulf of Mexico (GOM). It supports both a large commercial and popular recreational fishery, however knowledge of this fish’s life history is limited spatially. Non-linear curve fitting was used to estimate growth parameters and Akaike information criteria (AIC) was used to determine relative model fit. The 2-parameter von Bertalanffy growth function provided the best model fit and lowest AIC score. Histological examination indicated that Vermilion Snapper are batch spawners with asynchronous oocyte development. Additionally, 17% of Vermilion Snapper in the actively spawning phase containing 24 hour POF’s …

Modern Fair-Weather And Storm Sediment Transport Around Ship Island, Mississippi: Implications For Coastal Habitats And Restoration Efforts, Eve Rettew Eisemann

Master's Theses

The Mississippi – Alabama barrier island chain is experiencing accelerated sea level rise, decreased sediment supply, and frequent hurricane impacts. These three factors drive unprecedented rates of morphology change and ecosystem reduction. All islands in the chain have experienced land loss on the order of hectares per year since records began in the 1840s. In 1969, Hurricane Camille impacted as a Category 5, breaching Ship Island, and significantly reduced viable seagrass habitat. Hurricane Katrina impacted as a Category 3 in 2005, further widening Camille Cut. To better understand the sustainability of these important islands and the ecosystems they support, sediment …

Bloom Or Bust: Retrospective Analysis Of The Giant Jellyfish, Nemopilema Nomurai (Scyphozoa: Rhizostomeae), Ecology In The East Asian Marginal Seas, Naomi Yoder

Master's Theses

The Giant Jellyfish, Nemopilema nomurai, is a large-bodied bloom-forming jellyfish that occurs in the semi-enclosed basins of the East Asian Marginal Seas. N. nomurai has bloomed more frequently in the past 20 years than in any period previously recorded. In Japan, recent N. nomurai blooms were responsible for millions of dollars in lost revenue and equipment damage to commercial fisheries alone. This study statistically analyzed 21 environmental factors in connection with N. nomurai occurrence (using occurrence as a proxy for blooms). Eight factors resulted in a statistically significant or marginally significant (p ≤ 0.10), linear or non-linear relationship with …

Determining The Viability Of Recent Storms As Modern Analogues For North-Central Gulf Of Mexico Paleotempestology Through Sedimentary Analysis And Storm Surge Reconstruction, Joshua Caleb Bregy

Master's Theses

The northern Gulf of Mexico has been devastated by recent intense storms. Camille (1969) and Katrina (2005) are two notable hurricanes that made landfall in virtually the same location in Mississippi. However, fully understanding the risks and processes associated with hurricane impacts is impeded by a short and fragmented instrumental record. Paleotempestology could potentially use modern analogues from intense storms in this region to extend the hurricane record back to pre-observational time. Existing empirically based models can back-calculate surge heights over coastal systems as a function of transport distance, particle settling velocity, and gravitational acceleration. We collected cores in a …

A Statistical Model For The Prediction Of Dissolved Oxygen Dynamics And The Potential For Hypoxia In The Mississippi Sound And Bight, Andreas Moshogianis

Master's Theses

Hypoxia events occur when dissolved oxygen concentrations fall below the minimum threshold (dissolved oxygen concentrations < 2 mg O₂ L^-1) necessary to avoid respiratory distress among aquatic organisms. In the Mississippi Sound and Bight, hypoxia is most prevalent from late-spring through late summer. Since hypoxia events can have dramatic effects on coastal fisheries, the spatial and temporal magnitude of hypoxia presents a clear threat to the productive fisheries in the northern Gulf of Mexico. Long-term hydrographic data were collected from eight sampling stations on a monthly basis from January 2009 to December 2011 along a cross-shelf transect from the mouth of …