Oceanography and Atmospheric Sciences and Meteorology Commons^™

Short- And Long-Term Effectiveness Of Coral Disease Treatments, Karen L. Neely, Colin P. Shea, Kevin A. Macaulay, Emily K. Hower, Michelle A. Dobler

Marine & Environmental Sciences Faculty Articles

Since 2014, stony coral tissue loss disease (SCTLD) has led to large-scale mortality of over 20 coral species throughout the Florida Reef Tract. In 2019, in-water disease intervention strategies were implemented to treat affected corals. Two treatment strategies were employed: (1) topical application of an amoxicillin paste directly to disease margins, and (2) application of a chlorinated epoxy to disease margins as well as an adjacent “disease break” trench. Effectiveness of treatments on 2,379 lesions from 725 corals representing five species was evaluated using mixed effects logistic regression models which demonstrated substantially greater effectiveness of amoxicillin compared to chlorine-treated lesions …

Ensemble Data Fitting For Bathymetric Models Informed By Nominal Data, Samantha Zambo

Dissertations

Due to the difficulty and expense of collecting bathymetric data, modeling is the primary tool to produce detailed maps of the ocean floor. Current modeling practices typically utilize only one interpolator; the industry standard is splines-in-tension.

In this dissertation we introduce a new nominal-informed ensemble interpolator designed to improve modeling accuracy in regions of sparse data. The method is guided by a priori domain knowledge provided by artificially intelligent classifiers. We recast such geomorphological classifications, such as ‘seamount’ or ‘ridge’, as nominal data which we utilize as foundational shapes in an expanded ordinary least squares regression-based algorithm. To our knowledge …

Multi-Modal Data Fusion, Image Segmentation, And Object Identification Using Unsupervised Machine Learning: Conception, Validation, Applications, And A Basis For Multi-Modal Object Detection And Tracking, Nicholas Lahaye

Computational and Data Sciences (PhD) Dissertations

Remote sensing and instrumentation is constantly improving and increasing in capability. Included within this, is the increase in amount of different instrument types, with various combinations of spatial and spectral resolutions, pointing angles, and various other instrument-specific qualities. While the increase in instruments, and therefore datasets, is a boon for those aiming to study the complexities of the various Earth systems, it can also present a large number of new challenges. With this information in mind, our group has set our aims on combining datasets with different spatial and spectral resolutions in an effective and as-general-as-possible way, with as little …

Diatoms Of The Intertidal Environments Of Willapa Bay, Washington, Usa As A Sea-Level Indicator, Isabel Hong, Benjamin P. Horton, Andrea D. Hawkes, Robert J. O.Donnell Iii, Jason S. Padgett, Tina Dura, Simon E. Engelhart

Geological Sciences Faculty Scholarship

An understanding of the modern relationship between diatom species and elevation is a prerequisite for using fossil diatoms to reconstruct relative sea level (RSL). We described modern diatom distributions from seven transects covering unvegetated subtidal environments to forested uplands from four tidal wetland sites (Smith Creek, Bone River, Niawiakum River, and Naselle River) of Willapa Bay, Washington, USA. We compared our diatom dataset (320 species from 104 samples) to a series of environmental variables (elevation, grain-size, total organic carbon (TOC_SOM), and porewater salinity) using hierarchical clustering and ordination. While no single variable consistently explains variations in diatom assemblages …

2021 August - Tennessee Monthly Climate Report, Tennessee Climate Office, East Tennessee State University

Tennessee Climate Office Monthly Reports

No abstract provided.

Assessing The Rates Of Post-Depositional Change Within 2004 Indian Ocean Sediments: Implications For Long-Term Records Of Paleotsunamis, Lillian Pearson

Master's Theses

Foraminifera are commonly used to examine patterns of tsunami inundation occurring over centennial to millennial timescales, but the impacts of post-depositional change on geologic reconstructions are unknown. In Sumatra, the taphonomic character (i.e., test surface condition) of a foraminifer can deteriorate over time, rendering them unidentifiable, and even dissolve them entirely. Here I investigate the rates of post-depositional change of foraminiferal assemblages found within the 2004 Indian Ocean Tsunami (IOT) deposit over a 15-year time interval in Aceh, Indonesia in a vegetated open coastal plain (Site 1: Pulot) and an unvegetated protected coastal cave (Site 2). I identified two zones …

It Takes Two To Tango : Understanding The Processes That Lead To Simultaneous Changes In Tropical Cyclone Intensity And Size And Communicating The Associated Hazards To Emergency Managers, Emily A. Paltz

Legacy Theses & Dissertations (2009 - 2024)

The severity of tropical cyclone (TC) hazards is modulated by both TC intensity and size. More intense TCs produce stronger storm surges and increase wind damage. Larger TCs potentially impact more people, increase the duration of TC hazards, produce stronger storm surges and increase the amount of rainfall and flooding. Thus, accurately forecasting both TC intensity and size and effectively communicating those forecasts are critical to properly preparing communities for TC impacts. Forecast accuracy can be improved by enhancing our understanding about the processes that cause changes in TC intensity and size. This research divides the Extended Best Track dataset …

Exploring Environmental And Methodological Sensitivities Of Forecasted And Observed Surface Winds And Gusts Using Underutilized Datasets, Alex Roslyn Gallagher

Legacy Theses & Dissertations (2009 - 2024)

Accurate forecasts and reliable observations of surface mean winds and gusts inhabit a vast and essential role in meteorological applications that range from wind energy, atmospheric transport, fire weather, and hazard assessment. This dissertation aims to address and explore known shortfalls in the prediction of mean winds and gusts as well as enhance evaluation and understanding of observed surface wind measurements. A variety of forecasts, methodologies, and observational dataset, many of which have been previously un- or under-utilized, are leveraged to tackle the differing needs of assessing mean winds, gusts, and the surface environment.Detailed verifications of HRRR (version 3 and …

Theoretical And Observational Analysis Of Ice Particles For Improvement Of Ice Microphysical Models, Vanessa Przybylo

Legacy Theses & Dissertations (2009 - 2024)

Frozen hydrometeors can grow to acquire a multitude of shapes and sizes, which influence the distribution of mass within cloud systems. Aggregates have a variety of formations based on initial ice particle size, shape, falling orientation, and the number of particles that collect. This work employs the theoretical Ice Particle and Aggregate Simulator (IPAS) as a statistical tool to repetitively collect ice crystals to derive bulk aggregate characteristics.

Objective Methodology To Identify The Sea Breeze Circulation And Associated Low-Level Jet In The New York Bight, Elizabeth J. Mccabe

Legacy Theses & Dissertations (2009 - 2024)

While the sea breeze has been studied for decades, in a complicated mid-latitude coastal region such as the New York Bight (NYB), the general thermodynamic structure and dynamics of the circulation is poorly characterized. The East Coast of the United States has become a critical area for offshore wind farm development, including a generally favorable wind resource, relatively shallow waters on an extensive continental shelf, frequent warm season sea breezes, and proximity to large populated areas. Thus the sea breeze will play a key role in the new energy economy, given the favorable wind speeds and capacity factors during periods …

A Mechanism For Upscale Growth Of Convection In The Complex Terrain Of The Northeast U.S, Brennan Joseph Stutsrim

Legacy Theses & Dissertations (2009 - 2024)

Upstate New York has a variety of complex terrain that can interact with the background flow to create mesoscale heterogeneities in the lower troposphere. The major valleys of Upstate New York, the Hudson and Mohawk Valleys, often have increased moisture content and stronger surface winds than the higher terrain surrounding them. These features can have a profound effect on the evolution of convective storms, especially in cases characterized by low-to-moderate shear, which tends to favor pulse-like or multicellular convection. Analysis of composite radar imagery has indicated that convective storms often change mode while descending from the Catskills Mountains into the …

Predictability Issues Associated With Near-Freezing Precipitation Type In Complex Terrain, Matthew Seymour

Legacy Theses & Dissertations (2009 - 2024)

Predictability challenges are heightened in winter weather forecasting when the environment for high-impact weather is marginal or varies over short distances. High-resolution numerical weather prediction (NWP), such as the High-Resolution Rapid Refresh (HRRR), and ensemble forecast systems, such as the Global Ensemble Forecast System (GEFS), are useful for constraining forecasts. However, their use can be challenging in marginal, near-freezing, situations when precipitation type is uncertain. Uncertainties in planetary boundary layer (PBL) and microphysics (MP) parameterizations and subtle synoptic-scale model errors brought on by differences in initial and lateral boundary conditions (IC/BCs) complicate the p-type forecast. Further, complex terrain, such as …

The Effect Of Differential Friction On Tropical Cyclone Development Close To Land, Minghao Zhou

Legacy Theses & Dissertations (2009 - 2024)

Hurricane Karl (2010) underwent unexpected rapid intensification in the Bay of Campeche while remaining in close proximity (within 150 km) to land. It is hypothesized that the frictionally-enhanced inflow contributed positively to this evolution, despite reduced surface fluxes and increased momentum loss over land. In this study, the role of differential friction in the development of a tropical cyclone (TC) tracking parallel to a coastline is examined based on this prototype.A series of high-resolution, semi-idealized numerical simulations with full physics were conducted on a β-plane with curvature effects of the Earth. After initializing a TC from a synoptic-scale thermal perturbation, …

Frequency And Characteristics Of Inland Advecting Sea Breezes In The Southeast United States, Brian Viner, Stephen Noble, Jian Hua Qian, David Werth, Paul Gayes, Len Pietrafesa, Shaowu Bao

Marine Science

Sea breezes have been observed to move inland over 100 km. These airmasses can be markedly different from regional airmasses, creating a shallow layer with differences in humidity, wind, temperature and aerosol characteristics. To understand their influence on boundary layer and cloud development on subsequent days, we identify their frequency and characteristics. We visually identified sea breeze fronts on radar passing over the Savannah River Site (SRS) between March and October during 2015-2019. The SRS is ~150 km from the nearest coastal location; therefore, our detection suggests further inland penetration. We also identified periods when sea breeze fronts may have …

Studies Of The Planetary Boundary Layer And Their Impact On Air Pollution In A Semi-Arid Region With Complex Terrain, Nakul Nitin Karle

Open Access Theses & Dissertations

The adjacent cities of El Paso-Juárez, located in the Rio Grande Rift Valley and surrounded by complex mountainous terrain, have undergone rapid urbanization and industrial growth in the last few decades, accompanied by increasing substandard air quality episodes. Although numerous air quality studies were conducted in this semi-arid region in the past, none focused extensively on the Planetary Boundary Layer (PBL) contribution and impact on air pollutant concentrations. In this work, both the high and low ozone episodes from 2015 to 2020 were examined. Both modeling and experimental data of the PBL height (PBLH) were obtained and related to atmospheric …

Assessing Long-Term Coral Coverage At East And West Flower Garden Banks, Rebekah Alicia Hernandez

Theses and Dissertations

Coral reefs provide critical habitat for diverse benthic communities; however, more than 10% of existing reefs have been lost as a result of natural and anthropogenic stressors. While there has been a decline in reefs around the world, East and West Flower Garden Banks (FGBs), part of Flower Garden Banks National Marine Sanctuary (FGBNMS), have maintained > 50% live coral cover for over 27 years as revealed by the FGBNMS long-term monitoring (LTM) program. In the 1980’s, the LTM program at East and West FGBs was developed in response to the expansion of oil and gas exploration, anchoring, and fishing impacts …

Investigation Of Techniques And Their Application For The Cryopreservation Of Algal Species, Jazmine Leija

Theses and Dissertations

An alternative source for petroleum-based crude oils are algae derived biofuels. Fossil fuels are harmful for the environment, expensive and becoming scarce. There has been an increase in research on environmentally sustainable energy, using lipids derived from microalgae, which can be converted into biofuel. The use of microalgae as a source for biofuels has a lot of benefits including decreasing greenhouse gas emissions, rapid fuel production, absorption of carbon dioxide, and production of a renewable source of energy.

Algae cryopreservation aids in the maintenance of the best algae strains selected for producing lipids for biofuels. Cryopreservation will help minimize genetic …

Biochar Applications To The Remediation Of Lead And Polychlorinated Biphenyl Contaminated Water, Victory Itua Igberase

Theses and Dissertations

This study investigated the performance of biochar materials as adsorbents to remove Pb and polychlorinated biphenyl (PCB) in aqueous solutions. Batch adsorption and column experiment packed with biochar and geomaterials (pumice) in 1:1 volume ratio was evaluated to address the efficacy of biochar in removing Pb while only batch adsorption was employed for PCB removal with biochar materials. Overall, PT biochars performed the best (42–53 mg g−1) followed by BE biochars (10–32 mg g−1) and AB biochars (17–27 mg g−1) while high temperature biochars were favored in terms of maximum Pb adsorption capacity. Column Pb breakthrough showed similar results, with …

A Biological Assessment Of Oyster Restoration Mats Throughout The Indian River Lagoon: Changes In Community Composition And Filtration Capacity Of Living Docks, Morgan Katherine Gilligan

Theses and Dissertations

Like many estuaries worldwide, the Indian River Lagoon (IRL), has seen a decline in resources and overall water quality due to human activities. There is a growing interest in implementing ecological engineering methods to restore water quality. One such method is the construction and deployment of oyster restoration mats on dock pilings, known as the Living Docks program. This community driven program was founded at Florida Tech with the goal of promoting the growth of filter feeding benthic organisms to improve local water quality. Since 2013, twelve docks have been deployed in the central IRL, spanning from Cape Canaveral (28º …

A Typology Of Drought Decision Making: Synthesizing Across Cases To Understand Drought Preparedness And Response Actions, Amanda E. Cravens, Jen Henderson, Jack Friedman, Nina Burkardt, Ashley E. Cooper, Tonya Haigh, Michael Hayes, Jamie Mcenvoy, Stephanie Paladino, Adam K. Wilke, Hailey Wilmer

National Drought Mitigation Center: Faculty Publications

Drought is an inescapable reality in many regions, including much of the western United States. With climate change, droughts are predicted to intensify and occur more frequently, making the imperative for drought management even greater. Many diverse actors – including private landowners, business owners, scientists, non-governmental organizations (NGOs), and managers and policymakers within tribal, local, state, and federal government agencies – play multiple, often overlapping roles in preparing for and responding to drought. Managing water is, of course, one of the most important roles that humans play in both mitigating and responding to droughts; but, focusing only on “water managers” …

Novel Application Of 210po-210pb Disequilibria To Date Snow, Melt Pond, Ice Core, And Ice-Rafted Sediments In The Arctic Ocean, Mark Baskaran, Katherine Krupp, Mark Baskaran

Environmental Science and Geology Faculty Research Publications

We collected surface ocean water, snow, grab ice, ice core, melt pond and ice-rafted sediment (IRS) from 5 ice stations during the Western Arctic US GEOTRACES cruise (USGCG Healy; August 10 – October 7, 2015) and analyzed for 210Po (T1/2 = 138.4 days) and 210Pb (T1/2 = 22.3 years) in dissolved and particulate phases (snow, grab ice, ice core, surface seawater) to investigate the 210Po:210Pb disequilibria in these matrices. Thirteen aerosol samples, using a large-volume aerosol sampler (PM10), from Dutch Harbor, AK to North Pole, were also collected and analyzed for 210Po/210Pb to quantify the atmospheric depositional input to the …

Phragmites Australis Dieback In The Mississippi River Delta: Chemical Profiles Of Soil Types And Restoration Potential, Herie Lee

LSU Master's Theses

Since 2016, there has been widespread dieback of P. australis in the Lower Mississippi River Delta (hereafter referred to as Lower MRD, which is defined as the Birds Foot Delta) with relatively little to no signs of recovery. The cause of the current dieback is not fully understood. This thesis explores P. australis with emphasis on chemical profile characterization of different soil types and its effects on plant growth and the potential for restoration in the Lower MRD.

In chapter 2, I characterized the chemical profiles of soils collected from healthy and dieback stands of Phragmites, and from newly …

210po And 210pb As Tracers Of Particle Cycling And Export In The Western Arctic Ocean, Wokil Bam, Kanchan Maiti

Environmental Science and Geology Faculty Research Publications

The distribution and vertical fluxes of particulate organic carbon and other key elements in the Arctic Ocean are primarily governed by the spatial and seasonal changes in primary productivity, areal extent of ice cover, and lateral exchange between the shelves and interior basins. The Arctic Ocean has undergone rapid increase in primary productivity and drastic decrease in the areal extent of seasonal sea ice in the last two decades. These changes can greatly influence the biological pump as well as associated carbon export and key element fluxes. Here, we report the export of particulate organic and inorganic carbon, particulate nitrogen …

U.S. Geological Survey Science For The Wyoming Landscape Conservation Initiative—2018 Annual Report, Patrick J. Anderson, Cameron L. Aldridge, Jason S. Alexander, Timothy J.` Assal, Steven Aulenbach, Zachary H. Bowen, Anna D. Chalfoun, Geneva W. Chong, Holly Copeland, David R. Edmunds, Steve Germaine, Tabitha Graves, Julie A. Heinrichs, Collin G. Homer, Christopher G. Huber, Aaron N. Johnston, Matthew J. Kauffman, Daniel J. Manier, Ryan R. Mcshane, Cheryl A. Eddy-Miller, Kirk A. Miller, Adrian P. Monroe, Michael S. O'Donnell, Anna Ortega, Annika W. Walters, Daniel J. Wieferich, Teal B. Wyckoff, Linda Zeigenfuss

United States Geological Survey: Water Reports and Publications

The Wyoming Landscape Conservation Initiative (WLCI) was established in 2007 as a collaborative interagency partnership to develop and implement science-based conservation actions. During the past 11 years, partners from U.S. Geological Survey (USGS), State and Federal land management agencies, universities, and the public have collaborated to implement a long-term (more than 10 years) science-based program that assesses and enhances the quality and quantity of wildlife habitats in the southwest Wyoming region while facilitating responsible development. The USGS WLCI Science Team completes scientific research and develops tools that inform and support WLCI partner planning, decision making, and on-the-ground management actions.

In …

Regional Characteristics And Variability Of Extreme Precipitation And Atmospheric Rivers In Past, Present, And Future Climates Over The Contiguous United States, Emily Anne Slinskey

Dissertations and Theses

This dissertation examines the regional and seasonal variability of extreme precipitation and atmospheric rivers (ARs) across the contiguous United States (CONUS) in past, present, and future climates. An extreme precipitation categorization scheme, designed to monitor and track the multi-scale variability of extreme precipitation, is applied to a range of precipitation measurement products as an assessment of observational uncertainty. To investigate the importance of ARs across the CONUS, an objective AR identification algorithm is applied to global reanalysis to identify and characterize AR characteristics regionally over the observational record. Projected change in AR day frequency, geometry, intensity, and associated precipitation is …

Climate Model Evaluation Of Atmospheric Rivers Over The Contiguous United States, Ilan González-Hirshfeld

Dissertations and Theses

Atmospheric rivers (ARs)--long corridors of intense atmospheric water vapor transport--significantly influence the hydrologic cycle and regional hydrometeorological extremes across the contiguous United States (CONUS). Ongoing and future climate change may alter AR characteristics and impacts, making confident climate model projections of future change, especially at regional scales, of critical importance. In order to better constrain uncertainty in such projections of future change, we perform a comprehensive climate model evaluation of AR climatology over the CONUS. Using an established AR detection algorithm, we evaluate the representation of ARs in historical simulations (1984-2013) from a suite of models participating in the sixth …

Saving The Last Unicorns: The Genetic Rescue Of Florida’S Pillar Corals, Karen L. Neely, Cynthia L. Lewis, Keri O’Neil, Cheryl M. Woodley, Jennifer Moore, Zach Ransom, Amelia Moura, Ken Nedimyer, David Vaughan

Marine & Environmental Sciences Faculty Articles

As stony coral tissue loss disease (SCTLD) swept through the Florida Reef Tract, one of the most severely impacted species was the iconic pillar coral, Dendrogyra cylindrus. As the species’ population experienced a precipitous decline, a collaborative rescue project collected colony fragments for safekeeping at onshore and offshore nursery facilities. Between 2015 and 2019, a total of 574 fragments representing 128 genotypes were collected. These are currently dispersed among five facilities where they continue to provide opportunities to (1) refine best husbandry practices for D. cylindrus, (2) develop treatment options for SCTLD that have been adapted for use …

Projections Of Large-Scale Atmospheric Circulation Patterns And Associated Temperature And Precipitation Over The Pacific Northwest Using Cmip6 Models, Graham Patrick Taylor

Dissertations and Theses

Projections of 500 hPa geopotential height (Z500) patterns over the Pacific Northwest of North America and their associated surface temperature, precipitation, and frequency of occurrence are assessed using models from the 6th phase of the Coupled Model Intercomparison Project (CMIP6). The self-organizing maps approach is applied to reanalysis data from the Modern-Era Retrospective Analysis for Research and Applications, version-2 (MERRA-2) to cluster daily Z500 anomalies into 12 representative patterns that span the range of historical circulation patterns. CMIP6 data for daily Z500 anomalies are mapped to each node for historical and end of century global warming experiments, and the resulting …

Microbial Communities Of Hydrothermal Guaymas Basin Surficial Sediment Profiled At 2 Millimeter-Scale Resolution, Bert Engelen, Tien Nguyen, Benedikt Heyerhoff, Saskia Kalenborn, Katharina Sydow, Houssem Tabai, Richard N. Peterson, Gunter Wegener, Andreas Teske

Marine Science

The surficial hydrothermal sediments of Guaymas Basin harbor complex microbial communities where oxidative and reductive nitrogen, sulfur, and carbon-cycling populations and processes overlap and coexist. Here, we resolve microbial community profiles in hydrothermal sediment cores of Guaymas Basin on a scale of 2 millimeters, using Denaturing Gradient Gel Electrophoresis (DGGE) to visualize the rapid downcore changes among dominant bacteria and archaea. DGGE analysis of bacterial 16S rRNA gene amplicons identified free-living and syntrophic deltaproteobacterial sulfate-reducing bacteria, fermentative Cytophagales, members of the Chloroflexi (Thermoflexia), Aminicenantes, and uncultured sediment clades. The DGGE pattern indicates a gradually changing downcore community structure where small …

Synoptic Conditions And Potential Causes Of The Extreme Heavy Rainfall Event Of January 2009 Over Mindanao Island, Philippines, Lyndon Mark P. Olaguera, Michelle Español Caballar, Joseph Cabacungan De Mata, Loida Ann Torres Dagami, Jun Matsumoto, Hisayuki Kubota

Physics Faculty Publications

This study investigates the synoptic conditions that led to the heavy rainfall/flood (HRF) event in Mindanao Island, Philippines (122 −127°E; 5 −10°N), on January 2009 (JAN2009 HRF) that are less emphasized in previous works. Extensive flooding was reported over Cagayan de Oro City in the northern part of Mindanao, where the rainfall on January 10, 11, and 13, 2009, exceeded the 99th percentile of daily rainfall records of all January of the city from 1979 to 2017 by almost two times. A similar exceedance was also felt in Hinatuan station over the eastern coast of Mindanao Island on January 15, …