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Oceanography and Atmospheric Sciences and Meteorology Commons™

Open Access. Powered by Scholars. Published by Universities.®

2014

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Articles 451 - 480 of 512

Full-Text Articles in Oceanography and Atmospheric Sciences and Meteorology

Global Stratospheric Fluorine Inventory For 2004-2009 From Atmospheric Chemistry Experiment Fourier Transform Spectrometer (Ace-Fts) Measurements And Slimcat Model Simulations, A. T. Brown, M. P. Chipperfield, N. A. D. Richards, C. Boone, P. F. Bernath Jan 2014

Global Stratospheric Fluorine Inventory For 2004-2009 From Atmospheric Chemistry Experiment Fourier Transform Spectrometer (Ace-Fts) Measurements And Slimcat Model Simulations, A. T. Brown, M. P. Chipperfield, N. A. D. Richards, C. Boone, P. F. Bernath

Chemistry & Biochemistry Faculty Publications

Fluorine-containing species can be extremely effective atmospheric greenhouse gases. We present fluorine budgets using organic and inorganic species retrieved by the ACE-FTS satellite instrument supplemented with output from the SLIMCAT 3-D chemical transport model. The budgets are calculated between 2004 and 2009 for a number of latitude bands: 70-30 °N, 30-00 °N, 00 °N-30 °S, and 30-70°S. At lower altitudes total fluorine profiles are dominated by the contribution from CFC-12, up to an altitude of 20 km in the extra-tropics and 29 km in the tropics; above these altitudes the profiles are dominated by hydrogen fluoride (HF). Our data show …

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Technical Note: Swift - A Fast Semi-Empirical Model For Polar Stratospheric Ozone Loss, M. Rex, S. Kremser, P. Huck, G. Bodeker, I. Wohltmann, M. L. Santee, P. F. Bernath Jan 2014

Technical Note: Swift - A Fast Semi-Empirical Model For Polar Stratospheric Ozone Loss, M. Rex, S. Kremser, P. Huck, G. Bodeker, I. Wohltmann, M. L. Santee, P. F. Bernath

Chemistry & Biochemistry Faculty Publications

An extremely fast model to estimate the degree of stratospheric ozone depletion during polar winters is described. It is based on a set of coupled differential equations that simulate the seasonal evolution of vortex-averaged hydrogen chloride (HCl), nitric acid (HNO3), chlorine nitrate (ClONO2), active forms of chlorine (ClOx = Cl+ClO+2ClOOCl) and ozone (O3) on isentropic levels within the polar vortices. Terms in these equations account for the chemical and physical processes driving the time rate of change of these species. Eight empirical fit coefficients associated with these terms are derived by iteratively fitting the equations …

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Derivation Of Tropospheric Methane From Tccon Ch4 And Hf Total Column Observations, K. M. Saad, D. Wunch, P. Bernath, C. Boone, B. Connor, N. M. Deutscher, D.W.T. Griffith, R. Kivi, J. Notholt, C. Roehl, M. Schneider, V. Sherlock, P. O. Wennberg Jan 2014

Derivation Of Tropospheric Methane From Tccon Ch4 And Hf Total Column Observations, K. M. Saad, D. Wunch, P. Bernath, C. Boone, B. Connor, N. M. Deutscher, D.W.T. Griffith, R. Kivi, J. Notholt, C. Roehl, M. Schneider, V. Sherlock, P. O. Wennberg

Chemistry & Biochemistry Faculty Publications

The Total Carbon Column Observing Network (TCCON) is a global ground-based network of Fourier transform spectrometers that produce precise measurements of column-averaged dry-air mole fractions of atmospheric methane (CH4). Temporal variability in the total column of CH4 due to stratospheric dynamics obscures fluctuations and trends driven by tropospheric transport and local surface fluxes that are critical for understanding CH4 sources and sinks. We reduce the contribution of stratospheric variability from the total column average by subtracting an estimate of the stratospheric CH4 derived from simultaneous measurements of hydrogen fluoride (HF). HF provides a proxy for …

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Methods For The Characterization Of Deep-Sea Benthic Megafauna In The Vicinity Of The Deepwater Horizon Macondo Well, Stephanie Marie Sharuga Jan 2014

Methods For The Characterization Of Deep-Sea Benthic Megafauna In The Vicinity Of The Deepwater Horizon Macondo Well, Stephanie Marie Sharuga

LSU Doctoral Dissertations

Soft-sediment benthic environments are amongst the largest marine ecosystems in the world and play important roles in many ecosystem functions. In recent years, exploitation of resources and unintentional impacts on deep-sea benthic environments has increased. The Deepwater Horizon oil spill of 2010 in the northern Gulf of Mexico (GoM) represented a prime example of this. The oil spill not only highlighted deficiencies of data and information on baseline conditions, but also represented an opportunity to learn more and develop better methods for the future. Deep-sea imaging platforms such as autonomous underwater vehicles (AUVs) and remotely operated vehicles (ROVs) have been …

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Relative Permeability Of Homogenous-Wet And Mixed-Wet Porous Media As Determined By Pore-Scale Lattice Boltzmann Modeling, C. J. Landry, Z. T. Karpyn, O. Ayala Jan 2014

Relative Permeability Of Homogenous-Wet And Mixed-Wet Porous Media As Determined By Pore-Scale Lattice Boltzmann Modeling, C. J. Landry, Z. T. Karpyn, O. Ayala

Engineering Technology Faculty Publications

We present a pore-scale study of two-phase relative permeability in homogenous-wet porous media, and porous media altered to a mixed-wet state. A Shan-Chen type multicomponent lattice Boltzmann (LB) model is employed to determine pore-scale fluid distributions and relative permeability. Mixed-wet states are created by altering the wettability of solid surfaces in contact with the nonwetting phase at the end of steady state simulation of initially homogenous-wet porous media. To ensure accurate representation of fluid-solid interfacial areas, we compare LB simulation results to experimental measurements of interfacial fluid-fluid and fluid-solid areas determined by X-ray computed microtomography imaging of water and oil …

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So, You Want To Use Next Generation Sequencing In Marine Systems? Insight From The Pan Pacific Advanced Studies Institute, D. A. Willette, F. W. Allendorf, P. H. Barber, D. J. Barshis, K. E. Carpenter, E. D. Crandall, W. A. Cresko, I. Fernandez-Silva, M. V. Matz, E. Meyer, M. D. Santos, L. W. Seeb, J. E. Seeb Jan 2014

So, You Want To Use Next Generation Sequencing In Marine Systems? Insight From The Pan Pacific Advanced Studies Institute, D. A. Willette, F. W. Allendorf, P. H. Barber, D. J. Barshis, K. E. Carpenter, E. D. Crandall, W. A. Cresko, I. Fernandez-Silva, M. V. Matz, E. Meyer, M. D. Santos, L. W. Seeb, J. E. Seeb

Biological Sciences Faculty Publications

The emerging field of next-generation sequencing (NGS) is rapidly expanding capabilities for cutting edge genomic research, with applications that can help meet marine conservation challenges of food security, biodiversity loss, and climate change. Navigating the use of these tools, however, is complex at best. Furthermore, applications of marine genomic questions are limited in developing nations where both marine biodiversity and threats to marine biodiversity are most concentrated. This is particularly true in Southeast Asia. The first Pan-Pacific Advanced Studies Institute (PacASI) entitled "Genomic Applications to Marine Science and Resource Management in Southeast Asia" was held in July 2012 in Dumaguete, …

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Evolution Of The Freshwater Sardinella, Sardinella Tawilis (Clupeiformes: Clupeidae), In Taal Lake, Philippines And Identification Of Iits Marine Sister-Species, Sardinella Hualiensis, Demian Willette, Kent E. Carpenter, Mudjekeewis Santos Jan 2014

Evolution Of The Freshwater Sardinella, Sardinella Tawilis (Clupeiformes: Clupeidae), In Taal Lake, Philippines And Identification Of Iits Marine Sister-Species, Sardinella Hualiensis, Demian Willette, Kent E. Carpenter, Mudjekeewis Santos

Biological Sciences Faculty Publications

We identify the sister species of the world's only freshwater sardinella, Sardinella tawilis (Herre, 1927) of Taal Lake, Philippines as the morphologically-similar marine Taiwanese sardinella Sardinella hualiensis (Chu and Tsai, 1958). Evidence of incomplete lineage sorting and a species tree derived from three mitochondrial genes and one nuclear gene indicate that S. tawilis diverged from S. hualiensis in the late Pleistocene. Neutrality tests, mismatch distribution analysis, sequence diversity indices, and species tree analysis indicate populations of both species have long been stable and that the divergence between these two lineages occurred prior to the putative 18th century formation of Taal …

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Middle Atmospheric Changes Caused By The January And March 2012 Solar Proton Events, C. H. Jackman, C. E. Randall, V. L. Harvey, S. Wang, E. L. Fleming, M. López-Puertas, B. Funke, P. F. Bernath Jan 2014

Middle Atmospheric Changes Caused By The January And March 2012 Solar Proton Events, C. H. Jackman, C. E. Randall, V. L. Harvey, S. Wang, E. L. Fleming, M. López-Puertas, B. Funke, P. F. Bernath

Chemistry & Biochemistry Faculty Publications

The recent 23-30 January and 7-11 March 2012 solar proton event (SPE) periods were substantial and caused significant impacts on the middle atmosphere. These were the two largest SPE periods of solar cycle 24 so far. The highly energetic solar protons produced considerable ionization of the neutral atmosphere as well as HOx (H, OH, HO2) and NOx (N, NO, NO2). We compute a NOx production of 1.9 and 2.1 Gigamoles due to these SPE periods in January and March 2012, respectively, which places these SPE periods among the 12 largest in the past 50 yr. Aura Microwave Limb Sounder (MLS) …

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Light Scattering From Aerosol Particles In The El Paso Del Norte Region / The Effect Of Humidity, Richard Medina Calderon Jan 2014

Light Scattering From Aerosol Particles In The El Paso Del Norte Region / The Effect Of Humidity, Richard Medina Calderon

Open Access Theses & Dissertations

Atmospheric aerosols play an important role in climate forcing, through scattering and absorption of the incoming solar radiation. The extinction of light by the presence of atmospheric aerosols was studied using two first-principle models, and corresponding computer codes. In the first model the extinction of light from irregularly shaped aerosol particles was analyzed. In the second model it was assumed that the irregularly shaped aerosol particles were covered by a film of water, and the hygroscopicity and the extinction of light by the aerosols was analyzed. These models were then applied to the Paso del Norte region and their light …

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Characterizing The Tgt-Lightning Relationship Using Entln, Kareem Omar Jan 2014

Characterizing The Tgt-Lightning Relationship Using Entln, Kareem Omar

Summer Community of Scholars Posters (RCEU and HCR Combined Programs)

No abstract provided.

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Impact Of Desert Dust And Biomass Burning On The Radiative Budget Of The Sahel, Christopher Phillips Jan 2014

Impact Of Desert Dust And Biomass Burning On The Radiative Budget Of The Sahel, Christopher Phillips

Summer Community of Scholars Posters (RCEU and HCR Combined Programs)

No abstract provided.

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A Depth Refugium From Catastrophic Coral Bleaching Prevents Regional Extinction, Tyler B. Smith, Peter W. Glynn, Juan L. Maté, Lauren T. Toth, Joanna Gyory Jan 2014

A Depth Refugium From Catastrophic Coral Bleaching Prevents Regional Extinction, Tyler B. Smith, Peter W. Glynn, Juan L. Maté, Lauren T. Toth, Joanna Gyory

Ocean Engineering and Marine Sciences Faculty Publications

Species intolerant of changing climate might avoid extinction within refugia buffered from extreme conditions. Refugia have been observed in the fossil record but are not well documented or understood on ecological time scales. Using a 37-year record from the eastern Pacific across the two most severe El Nin˜ o events on record (1982–1983 and 1997– 1998) we show how an exceptionally thermally sensitive reef-building hydrocoral, Millepora intricata, twice survived catastrophic bleaching in a deeper-water refuge (.11 m depth). During both events, M. intricata was extirpated across its range in shallow water, but showed recovery within several years, while two other …

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Comparing Biofouling Control Treatments For Use On Aquaculture Nets, Geoffrey Swain, Nagahiko Shinjo Jan 2014

Comparing Biofouling Control Treatments For Use On Aquaculture Nets, Geoffrey Swain, Nagahiko Shinjo

Ocean Engineering and Marine Sciences Faculty Publications

Test panels comprised of uncoated, copper coated and silicone coated 7/8'' (22 mm) mesh knitted nylon net were evaluated to compare their properties and the effectiveness to prevent biofouling. This paper describes test procedures that were developed to quantify the performance in terms of antifouling, cleanability, drag and cost. The copper treatment was the most effective at controlling fouling, however, the silicone treated nets were the easiest to clean. The drag forces on the net were a function of twine diameter, twine roughness and fouling. After immersion, the uncoated nets had the most drag followed by the silicone and copper …

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Finding Them Before They Find Us: Informatics, Parasites, And Environments In Accelerating Climate Change, Daniel R. Brooks, Eric P. Hoberg, Walter A. Boeger, Scott Lyell Gardner, Kurt E. Galbreath, David Herczeg, Hugo H. Mejía-Madrid, S. Elizabeth Rácz, Altangerel Tsogtsaikhan Dursahinhan Jan 2014

Finding Them Before They Find Us: Informatics, Parasites, And Environments In Accelerating Climate Change, Daniel R. Brooks, Eric P. Hoberg, Walter A. Boeger, Scott Lyell Gardner, Kurt E. Galbreath, David Herczeg, Hugo H. Mejía-Madrid, S. Elizabeth Rácz, Altangerel Tsogtsaikhan Dursahinhan

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Parasites are agents of disease in humans, livestock, crops, and wildlife and are powerful representations of the ecological and historical context of the diseases they cause. Recognizing a nexus of professional opportunities and global public need, we gathered at the Cedar Point Biological Station of the University of Nebraska in September 2012 to formulate a cooperative and broad platform for providing essential information about the evolution, ecology, and epidemiology of parasites across host groups, parasite groups, geographical regions, and ecosystem types. A general protocol, documentation–assessment–monitoring–action (DAMA), suggests an integrated proposal to build a proactive capacity to understand, anticipate, and respond …

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Nongeocentric Axial Dipole Field Behavior During The Mono Lake Excursion, Robert M. Negrini, Daniel T. Mccuan, Robert A. Horton, James D. Lopez, William S. Cassata, James E. T. Channell, Kenneth L. Verosub, Jeffrey R. Knott, Robert S. Coe, Joseph C. Liddicoat, Steven P. Lund, Larry Benson, Andrei M. Sarna-Wojcicki Jan 2014

Nongeocentric Axial Dipole Field Behavior During The Mono Lake Excursion, Robert M. Negrini, Daniel T. Mccuan, Robert A. Horton, James D. Lopez, William S. Cassata, James E. T. Channell, Kenneth L. Verosub, Jeffrey R. Knott, Robert S. Coe, Joseph C. Liddicoat, Steven P. Lund, Larry Benson, Andrei M. Sarna-Wojcicki

United States Geological Survey: Staff Publications

A new record of the Mono Lake excursion (MLE) is reported from the Summer Lake Basin of Oregon, USA. Sediment magnetic properties indicate magnetite as the magnetization carrier and imply suitability of the sediments as accurate recorders of the magnetic field including relative paleointensity (RPI) variations. The magnitudes and phases of the declination, inclination, and RPI components of the new record correlate well with other coeval but lower resolution records from western North America including records from the Wilson Creek Formation exposed around Mono Lake. The virtual geomagnetic pole (VGP) path of the new record is similar to that from …

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Wetland Reserve Program Enhances Site Occupancy And Species Richness In Assemblages Of Anuran Amphibians In The Mississippi Alluvial Valley, Usa, Susan C. Walls, J. Hardin Waddle, Stephen P. Faulkner Jan 2014

Wetland Reserve Program Enhances Site Occupancy And Species Richness In Assemblages Of Anuran Amphibians In The Mississippi Alluvial Valley, Usa, Susan C. Walls, J. Hardin Waddle, Stephen P. Faulkner

United States Geological Survey: Staff Publications

We measured amphibian habitat use to quantify the effectiveness of conservation practices implemented under the Wetland Reserve Program (WRP), an initiative of the U.S. Department of Agriculture’s Natural Resources Conservation Service. From February to June 2007, we quantified calling male anurans in cultivated cropland, former cultivated cropland restored through the WRP, and mature bottomland hardwood forest. Sites were located in two watersheds within the Mississippi Alluvial Valley of Arkansas and Louisiana, USA. We estimated detection probability and site occupancy within each land use category using a Bayesian hierarchical model of community species occurrence, and derived an estimate of species richness …

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Mapping Irrigated Areas In Afghanistan Over The Past Decade Using Modis Ndvi, Md. Shahriar Pervez, Michael Budde, James Rowland Jan 2014

Mapping Irrigated Areas In Afghanistan Over The Past Decade Using Modis Ndvi, Md. Shahriar Pervez, Michael Budde, James Rowland

United States Geological Survey: Staff Publications

Agricultural production capacity contributes to food security in Afghanistan and is largely dependent on irrigated farming, mostly utilizing surface water fed by snowmelt. Because of the high contribution of irrigated crops (> 80%) to total agricultural production, knowing the spatial distribution and year-to-year variability in irrigated areas is imperative to monitoring food security for the country. We used 16-day composites of the Normalized Difference Vegetation Index (NDVI) from the Moderate Resolution Imaging Spectroradiometer (MODIS) sensor to create 23-point time series for each year from 2000 through 2013. Seasonal peak values and time series were used in a threshold-dependent decision tree …

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Comparing Cropland Net Primary Production Estimates Frominventory, A Satellite-Based Model, And A Process-Based Model In Themidwest Of The United States, Zengpeng Li, Shuguang Liu, Zhengxi Tan, Normann B. Bliss, Claudia J. Young, Tristram O. West, Stephen M. Ogle Jan 2014

Comparing Cropland Net Primary Production Estimates Frominventory, A Satellite-Based Model, And A Process-Based Model In Themidwest Of The United States, Zengpeng Li, Shuguang Liu, Zhengxi Tan, Normann B. Bliss, Claudia J. Young, Tristram O. West, Stephen M. Ogle

United States Geological Survey: Staff Publications

Accurately quantifying the spatial and temporal variability of net primary production (NPP) for crop-lands is essential to understand regional cropland carbon dynamics. We compared three NPP estimates for croplands in the Midwestern United States: inventory-based estimates using crop yield data from the U.S. Department of Agriculture (USDA) National Agricultural Statistics Service (NASS); estimates from the satellite-based Moderate Resolution Imaging Spectroradiometer (MODIS) NPP product; and estimates from the General Ensemble biogeochemical Modeling System (GEMS) process-based model. The three methods estimated mean NPP in the range of 469–687 g C m−2yr−1and total NPP in the range of318–490 Tg C yr−1for croplands in …

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Humic Substances Interfere With Detection Of Pathogenic Prion Protein, Christen B. Smith, Clarissa J. Booth, Tyler J. Wadzinski, Giuseppe Legname, Rick Chappell, Christopher J. Johnson, Joel A. Pedersen Jan 2014

Humic Substances Interfere With Detection Of Pathogenic Prion Protein, Christen B. Smith, Clarissa J. Booth, Tyler J. Wadzinski, Giuseppe Legname, Rick Chappell, Christopher J. Johnson, Joel A. Pedersen

United States Geological Survey: Staff Publications

Studies examining the persistence of prions (the etiological agent of transmissible spongiform encephalopathies) in soil require accurate quantification of pathogenic prion protein (PrPTSE) extracted from or in the presence of soil particles. Here, we demonstrate that natural organic matter (NOM) in soil impacts PrPTSE detection by immunoblotting. Methods commonly used to extract PrPTSE from soils release substantial amounts of NOM, and NOM inhibited PrPTSE immunoblot signal. The degree of immunoblot interference increased with increasing NOM concentration and decreasing NOM polarity. Humic substances affected immunoblot detection of prion protein from both deer and hamsters. We also establish that after interaction with …

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Structural Equation Models Of Vmt Growth In Us Urbanised Areas, Reid Ewing, Shima Hamidi, Frank Gallivan, Arthur C. Nelson, James B. Grace Jan 2014

Structural Equation Models Of Vmt Growth In Us Urbanised Areas, Reid Ewing, Shima Hamidi, Frank Gallivan, Arthur C. Nelson, James B. Grace

United States Geological Survey: Staff Publications

Vehicle miles travelled (VMT) is a primary performance indicator for land use and transportation, bringing with it both positive and negative externalities. This study updates and refines previous work on VMT in urbanised areas, using recent data, additional metrics and structural equation modelling (SEM). In a cross-sectional model for 2010, population, income and freeway capacity are positively related to VMT, while gasoline prices, development density and transit service levels are negatively related. Findings of the cross-sectional model are generally confirmed in a more tightly controlled longitudinal study of changes in VMT between 2000 and 2010, the first model of its …

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Merging Remote Sensing Data And National Agricultural Statistics To Model Change In Irrigated Agriculture, Jesslyn F. Brown, Md Shahriar Pervez Jan 2014

Merging Remote Sensing Data And National Agricultural Statistics To Model Change In Irrigated Agriculture, Jesslyn F. Brown, Md Shahriar Pervez

United States Geological Survey: Staff Publications

Over 22 million hectares (ha) of U.S. croplands are irrigated. Irrigation is an intensified agricultural land use that increases crop yields and the practice affects water and energy cycles at, above, and below the land surface. Until recently, there has been a scarcity of geospatially detailed information about irrigation that is comprehensive, consistent, and timely to support studies tying agricultural land use change to aquifer water use and other factors. This study shows evidence for a recent overall net expansion of 522 thousand ha across the U.S. (2.33%) and 519 thousand ha (8.7%) in irrigated cropped area across the High …

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Comparing Crop Land Net Primary Production Estimates From Inventory, A Satellite-Based Model, And A Process-Based Model In The Midwest Of The United States Zhengpeng, Zhengpeng Li, Shuguang Liu, Zhengxi Tan, Normann B. Bliss, Claudia J. Young, Tristram O. West, Stephen M. Ogle Jan 2014

Comparing Crop Land Net Primary Production Estimates From Inventory, A Satellite-Based Model, And A Process-Based Model In The Midwest Of The United States Zhengpeng, Zhengpeng Li, Shuguang Liu, Zhengxi Tan, Normann B. Bliss, Claudia J. Young, Tristram O. West, Stephen M. Ogle

United States Geological Survey: Staff Publications

Accurately quantifying the spatial and temporal variability of net primary production (NPP) for crop-lands is essential to understand regional cropland carbon dynamics. We compared three NPP estimates for croplands in the Midwestern United States: inventory-based estimates using crop yield data from the U.S. Department of Agriculture (USDA) National Agricultural Statistics Service (NASS); estimates from the satellite-based Moderate Resolution Imaging Spectro radiometer (MODIS) NPP product; and esti-mates from the General Ensemble bio geochemical Modeling System (GEMS) process-based model. The three methods estimated mean NPP in the range of 469–687 g C m−2yr−1and total NPP in the range …

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Summary Of The Snowmastodon Project Special Volume: A High-Elevation, Multi-Proxy Biotic And Environmental Record Of Mis 6–4 From The Ziegler Reservoir Fossil Site, Snowmass Village, Colorado, Usa, Ian M. Miller, Jeffrey S. Pigati, R. Scott Anderson, Kirk R. Johnson, Shannon A. Mahan, Thomas A. Ager, Richard G. Baker, Maarten Blaauw, Jordon Bright, Peter M. Brown, Bruce Bryant, Zachary T. Calamari, Paul E. Carrara, Michael D. Cherney, John R. Demboski, Scott A. Elias, Daniel C. Fisher, Harrison J. Gray, Danielle R. Haskett, Jeffrey S. Honke, Stephen T. Jackson, Gonzalo Jiménez- Moreno, Douglas Kline, Eric M. Leonard, Nathaniel A. Lifton, Carol Lucking, H. Gregory Mcdonald, Dane M. Miller, Daniel R. Muhs, Stephen E. Nash, Cody Newton, James B. Paces, Lesley Petrie, Mitchell A. Plummer, David F. Porinchu, Adam N. Rountrey, Eric Scott, Joseph J.W. Sertich, Saxon E. Sharpe, Gary L. Skipp, Laura E. Strickland, Richard K. Stucky, Robert S. Thompson, Jim Wilson Jan 2014

Summary Of The Snowmastodon Project Special Volume: A High-Elevation, Multi-Proxy Biotic And Environmental Record Of Mis 6–4 From The Ziegler Reservoir Fossil Site, Snowmass Village, Colorado, Usa, Ian M. Miller, Jeffrey S. Pigati, R. Scott Anderson, Kirk R. Johnson, Shannon A. Mahan, Thomas A. Ager, Richard G. Baker, Maarten Blaauw, Jordon Bright, Peter M. Brown, Bruce Bryant, Zachary T. Calamari, Paul E. Carrara, Michael D. Cherney, John R. Demboski, Scott A. Elias, Daniel C. Fisher, Harrison J. Gray, Danielle R. Haskett, Jeffrey S. Honke, Stephen T. Jackson, Gonzalo Jiménez- Moreno, Douglas Kline, Eric M. Leonard, Nathaniel A. Lifton, Carol Lucking, H. Gregory Mcdonald, Dane M. Miller, Daniel R. Muhs, Stephen E. Nash, Cody Newton, James B. Paces, Lesley Petrie, Mitchell A. Plummer, David F. Porinchu, Adam N. Rountrey, Eric Scott, Joseph J.W. Sertich, Saxon E. Sharpe, Gary L. Skipp, Laura E. Strickland, Richard K. Stucky, Robert S. Thompson, Jim Wilson

United States Geological Survey: Staff Publications

In North America, terrestrial records of biodiversity and climate change that span Marine Oxygen Isotope Stage (MIS) 5 are rare. Where found, they provide insight into how the coupling of the ocean–atmosphere system is manifested in biotic and environmental records and how the biosphere responds to climate change. In 2010–2011, construction at Ziegler Reservoir near Snowmass Village, Colorado (USA) revealed a nearly continuous, lacustrine/wetland sedimentary sequence that preserved evidence of past plant communities between ~140 and 55 ka, including all of MIS 5. At an elevation of 2705 m, the Ziegler Reservoir fossil site also contained thousands of well-preserved bones …

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Radiocarbon Dating Loess Deposits In The Mississippi Valley Using Terrestrial Gastropod Shells (Polygyridae, Helicinidae, And Discidae), Jeffrey S. Pigati, John Mcgeehin, Daniel R. Muhs, David A. Grimley, Jeffrey C. Nekola Jan 2014

Radiocarbon Dating Loess Deposits In The Mississippi Valley Using Terrestrial Gastropod Shells (Polygyridae, Helicinidae, And Discidae), Jeffrey S. Pigati, John Mcgeehin, Daniel R. Muhs, David A. Grimley, Jeffrey C. Nekola

United States Geological Survey: Staff Publications

Small terrestrial gastropod shells (mainly Succineidae) have been used successfully to date late Quaternary loess deposits in Alaska and the Great Plains. However, Succineidae shells are less common in loess deposits in the Mississippi Valley compared to those of the Polygyridae, Helicinidae, and Discidae families. In this study, we conducted several tests to determine whether shells of these gastropods could provide reliable ages for loess deposits in the Mississippi Valley. Our results show that most of the taxa that we investigated incorporate small amounts (1–5%) of old carbon from limestone in their shells, meaning that they should yield ages that …

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Geologic Setting And Stratigraphy Of The Ziegler Reservoir Fossil Site, Snowmass Village, Colorado, Jeffrey S. Pigati, Ian M. Miller, Kirk R. Johnson, Jeffrey S. Honke, Paul E. Carrara, Daniel R. Muhs, Gary Skipp, Bruce Bryant Jan 2014

Geologic Setting And Stratigraphy Of The Ziegler Reservoir Fossil Site, Snowmass Village, Colorado, Jeffrey S. Pigati, Ian M. Miller, Kirk R. Johnson, Jeffrey S. Honke, Paul E. Carrara, Daniel R. Muhs, Gary Skipp, Bruce Bryant

United States Geological Survey: Staff Publications

The geologic setting of the Ziegler Reservoir fossil site is somewhat unusual—the sediments containing the Pleistocene fossils were deposited in a lake on top of a ridge. The lake basin was formed near Snowmass Village, Colorado (USA) when a glacier flowing down Snowmass Creek Valley became thick enough to overtop a low point in the eastern valley wall and entered the head of Brush Creek Valley. When the glacier retreated at about 155–130 ka, near the end of Marine Oxygen Isotope Stage 6, the Brush Creek Valley lobe left behind a moraine that impounded a small alpine lake. The lake …

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Toxicity Of Pb‐Contaminated Soil To Japanese Quail (Coturnix Japonica) And The Use Of The Blood–Dietary Pb Slope In Risk Assessment, W. Nelson Beyer, Yu Chen, Paula Henry, Thomas May, David Mosby, Barnett A. Rattner, Valerie I. Shearn-Bochsler, Daniel Sprague, John Weber Jan 2014

Toxicity Of Pb‐Contaminated Soil To Japanese Quail (Coturnix Japonica) And The Use Of The Blood–Dietary Pb Slope In Risk Assessment, W. Nelson Beyer, Yu Chen, Paula Henry, Thomas May, David Mosby, Barnett A. Rattner, Valerie I. Shearn-Bochsler, Daniel Sprague, John Weber

United States Geological Survey: Staff Publications

This study relates tissue concentrations and toxic effects of Pb in Japanese quail (Coturnix japonica) to the dietary exposure of soil‐borne Pb associated with mining and smelting. From 0% to 12% contaminated soil, by weight, was added to 5 experimental diets (0.12 to 382mg Pb/kg, dry wt) and fed to the quail for 6 weeks. Benchmark doses associated with a 50% reduction in delta‐aminolevulinic acid dehydratase activity were 0.62mg Pb/kg in the blood, dry wt, and 27mg Pb/kg in the diet. Benchmark doses associated with a 20% increase in the concentration of erythrocyte protoporphyrin were 2.7mg Pb/kg in …

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Testing Metapopulation Concepts: Effects Of Patch Characteristics And Neighborhood Occupancy On The Dynamics Of An Endangered Lagomorph, Mitchell J. Eaton, Phillip T. Hughes, James E. Hines, James D. Nichols Jan 2014

Testing Metapopulation Concepts: Effects Of Patch Characteristics And Neighborhood Occupancy On The Dynamics Of An Endangered Lagomorph, Mitchell J. Eaton, Phillip T. Hughes, James E. Hines, James D. Nichols

United States Geological Survey: Staff Publications

Metapopulation ecology is a field that is richer in theory than in empirical results. Many existing empirical studies use an incidence function approach based on spatial patterns and key assumptions about extinction and colonization rates. Here we recast these assumptions as hypotheses to be tested using 18 years of historic detection survey data combined with four years of data from a new monitoring program for the Lower Keys marsh rabbit. We developed a new model to estimate probabilities of local extinction and colonization in the presence of nondetection, while accounting for estimated occupancy levels of neighboring patches. We used model …

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Probit Models For Capture-Recapture Data Subject To Imperfect Detection, Individual Heterogeneity And Misidentification, Brett T. Mcclinktock, Larissa L. Bailey, Brian P. Dreher, William A. Link Jan 2014

Probit Models For Capture-Recapture Data Subject To Imperfect Detection, Individual Heterogeneity And Misidentification, Brett T. Mcclinktock, Larissa L. Bailey, Brian P. Dreher, William A. Link

United States Geological Survey: Staff Publications

As noninvasive sampling techniques for animal populations have become more popular, there has been increasing interest in the development of capture-recapture models that can accommodate both imperfect detection and misidentification of individuals (e.g., due to genotyping error). However, current methods do not allow for individual variation in parameters, such as detection or survival probability. Here we develop misidentification models for capture-recapture data that can simultaneously account for temporal variation, behavioral effects and individual heterogeneity in parameters. To facilitate Bayesian inference using our approach, we extend standard probit regression techniques to latent multinomial models where the dimension and zeros of the …

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Testing Metapopulation Concepts: Effects Of Patch Characteristics And Neighborhood Occupancy On The Dynamics Of An Endangered Lagomorph, Mitchell J. Eaton, Phillip T. Hughes, James E. Hines, James D. Nichols Jan 2014

Testing Metapopulation Concepts: Effects Of Patch Characteristics And Neighborhood Occupancy On The Dynamics Of An Endangered Lagomorph, Mitchell J. Eaton, Phillip T. Hughes, James E. Hines, James D. Nichols

United States Geological Survey: Staff Publications

Metapopulation ecology is a field that is richer in theory than in empirical results. Many existing empirical studies use an incidence function approach based on spatial patterns and key assumptions about extinction and colonization rates. Here we recast these assumptions as hypotheses to be tested using 18 years of historic detection survey data combined with four years of data from a new monitoring program for the Lower Keys marsh rabbit. We developed a new model to estimate probabilities of local extinction and colonization in the presence of nondetection, while accounting for estimated occupancy levels of neighboring patches. We used model …

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Probit Models For Capture-Recapture Data Subject To Imperfect Detection, Individual Heterogeneity And Misidentification1, Brett T. Mcclintock, Larissa L. Bailey, Brian P. Dreher, William A. Link Jan 2014

Probit Models For Capture-Recapture Data Subject To Imperfect Detection, Individual Heterogeneity And Misidentification1, Brett T. Mcclintock, Larissa L. Bailey, Brian P. Dreher, William A. Link

United States Geological Survey: Staff Publications

As noninvasive sampling techniques for animal populations have become more popular, there has been increasing interest in the development of capture-recapture models that can accommodate both imperfect detection and misidentification of individuals (e.g., due to genotyping error). However, current methods do not allow for individual variation in parameters, such as detection or survival probability. Here we develop misidentification models for capture-recapture data that can simultaneously account for temporal variation, behavioral effects and individual heterogeneity in parameters. To facilitate Bayesian inference using our approach, we extended standard probit regression techniques to latent multinomial models where the dimension and zeros of the …

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