Oceanography and Atmospheric Sciences and Meteorology Commons^™

A Review Of The Hyporheic Zone, Stream Restoration, And Means To Enhance Denitrification, Leanne Merill, David J. Tonjes

Technology & Society Faculty Publications

The hyporheic zone is the subsurface area below and adjacent to a stream where groundwater mixes with stream water, through vertical, lateral, and longitudinal flows. The hyporheic zone connects the stream to uplands and other terrestrial environments. It is a zone of distinct faunal communities, high biological diversity and ecological complexity, and is the site of chemical processing and transformations of ground- and stream waters. The hyporheic zone is important to the overall ecosystem ecology of the stream, and it can influence stream water chemistry. Flows, reactions, and biota in the hyporheic zone are heterogeneous and patchy, making it difficult …

The Impact Of Multiple Nursery Areas On The Population Structure Of Atlantic Menhaden, Brevooria Tyrannus, Kristen A. Anstead

OES Theses and Dissertations

Understanding the population structure and patterns of connectivity in marine fishes is essential when making predictions about a species' resiliency and persistence in an increasingly changing environment. The Atlantic Menhaden Brevoortia tyrannus is a clupeid that plays a critical role in the marine food web and supports one of the largest fisheries on the US East Coast. In addition to a decrease in overall numbers and spawning stock biomass, recruitment levels have remained low since the 1990s. Menhaden use numerous estuaries along the Atlantic coast for juvenile development before recruiting to the adult population and the contribution of each of …

Molecular Characterization And Photochemical Transformation Of Dissolved Organic Matter From Land To Ocean, Hongmei Chen

Chemistry & Biochemistry Theses & Dissertations

Molecular characterization and photochemical transformation of dissolved organic matter (DOM) in both rivers and the ocean is the main research focus of this dissertation. Chemical characterization of DOM is hampered by the limited application of advanced techniques to desalt, concentrate, isolate and then molecularly characterize DOM. An affordable, commercially available mini-electrodialysis (mini-ED) system has been evaluated and recommended for the efficient desalting of small volume samples of seawater prior to analysis by electrospray Fourier transform ion cyclotron resonance mass spectrometry (ESI FTICR-MS).

A high-recovery technique of DOM isolation – reverse osmosis coupled with electrodialysis (RO/ED) – was used to isolate …

Reproductive Phase Determination In Male Meagre (Argyrosomus Regius, Sciaenidae): Testis Development And Histologic Corroboration Of A Gross Anatomical Scale, Nuno Prista, Leonel Gordo, Jose L. Costa, Maria J. Costa, Cynthia M. Jones

OES Faculty Publications

Reproductive stage determination of male gonads has received sparse attention in fish biology literature with few studies detailing the building of gross anatomical-and histologic scales. The meagre (Argyrosomus regius) is one of the world's largest sciaenids and supports a significant regional fishery in European and North African waters whose reproductive patterns are yet to be fully investigated. In the present study, we derive a macroscopic grading system for meagre testis using semi-quantitative graphs that feature the testis variability along the species size range and time of the year. We then describe the histological stages and reproductive phases of …

Phytoplankton And Nutrient Dynamics In A Tidally Dominated Eutrophic Estuary: Daily Variability And Controls On Bloom Formation, Ryan E. Morse, Margaret R. Mulholland, Todd A. Egerton, Harold G. Marshall

OES Faculty Publications

To better understand nutrient dynamics and factors that promote the initiation of algal blooms, the Lafayette River, a tidal subestuary of Chesapeake Bay that experiences seasonal algal blooms, was sampled daily for a period of 54 d in the fall of 2005. Three phytoplankton blooms (chl a concentrations exceeding twice the average of monthly measurements from 2000 to 2009) occurred during this period: a mixed bloom of Akashiwo sanguinea and Gymnodinium sp., a monospecific Skeletonema costatum bloom, and a monospecific Gymnodinium sp. bloom. Over the sampling period, nutrient concentrations increased following precipitation events and were elevated between bloom periods but …

The Great 2012 Arctic Ocean Summer Cyclone Enhanced Biological Productivity On The Shelves, Jinlun Zhang, Carin Ashjian, Robert Campbell, Victoria Hill, Yvette H. Spitz, Michael Steele

OES Faculty Publications

A coupled biophysical model is used to examine the impact of the great Arctic cyclone of early August 2012 on the marine planktonic ecosystem in the Pacific sector of the Arctic Ocean (PSA). Model results indicate that the cyclone influences the marine planktonic ecosystem by enhancing productivity on the shelves of the Chukchi, East Siberian, and Laptev seas during the storm. Although the cyclone's passage in the PSA lasted only a few days, the simulated biological effects on the shelves last 1 month or longer. At some locations on the shelves, primary productivity (PP) increases by up to 90% and …

Lack Of Equivalence In The Elemental And Stable Isotope Chemistry Within The Sagittal Otolith Pair Of The Summer Flounder, Paralichthys Dentatus, Antranik Kajajian, Jason J. Schaffler, Cynthia M. Jones

OES Faculty Publications

In fish that are not bilaterally symmetrical, the left and right sagittae are often not symmetrical, exhibiting divergent growth patterns and mass, and may have differences in chemical composition. We investigated this in the asymmetrical summer flounder Paralichthys dentatus, collected from different nursery habitats along the US east coast. Significant differences were detected in otolith mass, δ¹³C, δ¹⁸O, Li:Ca, Mg:Ca, and Sr:Ca, and overall chemical signatures. These results refute the hypothesis of left-right equivalence that is prevalent for bilaterally symmetrical fishes. We tested whether a specific side was better suited for classification. The best models …

Can We Predict The Future: Juvenile Finfish And Their Seagrass Nurseries In The Chesapeake Bay, Cynthia M. Jones

OES Faculty Publications

The importance of estuarine seagrass beds as nurseries for juvenile fish has become a universal paradigm, especially for estuaries that are as important as the Chesapeake Bay. Yet, scientific tests of this hypothesis were equivocal depending on species, location, and metrics. Moreover, seagrasses themselves are under threat and one-third of seagrasses have disappeared worldwide with 65 of their losses occurring in estuaries. Although there have been extensive studies of seagrasses in the Chesapeake Bay, surprisingly few studies have quantified the relationship between seagrass as nurseries for finfish in the Bay. Of the few studies that have directly evaluated the use …

Emergence Of Algal Blooms: The Effects Of Short-Term Variability In Water Quality On Phytoplankton Abundance, Diversity, And Community Composition In A Tidal Estuary, Todd A. Egerton, Ryan E. Morse, Harold G. Marshall, Margaret R. Mulholland

OES Faculty Publications

Algal blooms are dynamic phenomena, often attributed to environmental parameters that vary on short timescales (e.g., hours to days). Phytoplankton monitoring programs are largely designed to examine long-term trends and interannual variability. In order to better understand and evaluate the relationships between water quality variables and the genesis of algal blooms, daily samples were collected over a 34 day period in the eutrophic Lafayette River, a tidal tributary within Chesapeake Bay's estuarine complex, during spring 2006. During this period two distinct algal blooms occurred; the first was a cryptomonad bloom and this was followed by a bloom of the mixotrophic …

Reproductive Phase Determination In Male Meagre (Argyrosomus Regius, Sciaenidae): Testis Development And Histologic Corroboration Of A Gross Anatomical Scale, Nuno Prista, Leonel Gordo, José Lino Costa, Maria José Costa, Cynthia Jones

OES Faculty Publications

Reproductive stage determination of male gonads has received sparse attention in fish biology literature with few studies detailing the building of gross anatomical- and histologic scales. The meagre (Argyrosomus regius) is one of the world's largest sciaenids and supports a significant regional fishery in European and North African waters whose reproductive patterns are yet to be fully investigated. In the present study, we derive a macroscopic grading system for meagre testis using semi-quantitative graphs that feature the testis variability along the species size range and time of the year. We then describe the histological stages and reproductive phases of male …

Detection Of Seagrass Scars Using Sparse Coding And Morphological Filter, Ender Oguslu, Sertan Erkanli, Victoria J. Hill, W. Paul Bissett, Richard C. Zimmerman, Jiang Li, Charles R. Bostater Jr. (Ed.), Stelios P. Mertikas (Ed.), Xavier Neyt (Ed.)

OES Faculty Publications

We present a two-step algorithm for the detection of seafloor propeller seagrass scars in shallow water using panchromatic images. The first step is to classify image pixels into scar and non-scar categories based on a sparse coding algorithm. The first step produces an initial scar map in which false positive scar pixels may be present. In the second step, local orientation of each detected scar pixel is computed using the morphological directional profile, which is defined as outputs of a directional filter with a varying orientation parameter. The profile is then utilized to eliminate false positives and generate the final …

The Impact Of Changing Surface Ocean Conditions On The Dissolution Of Aerosol Iron, Matthew P. Fishwick, Peter N. Sedwick, Maeve C. Lohan, Paul J. Worsfold, Kristen N. Buck, Thomas M. Church, Simon J. Ussher

OES Faculty Publications

The proportion of aerosol iron (Fe) that dissolves in seawater varies greatly and is dependent on aerosol composition and the physicochemical conditions of seawater, which may change depending on location or be altered by global environmental change. Aerosol and surface seawater samples were collected in the Sargasso Sea and used to investigate the impact of these changing conditions on aerosol Fe dissolution in seawater. Our data show that seawater temperature, pH, and oxygen concentration, within the range of current and projected future values, had no significant effect on the dissolution of aerosol Fe. However, the source and composition of aerosols …

Distinguishing Molecular Characteristics Of Aerosol Water Soluble Organic Matter From The 2011 Trans-North Atlantic Us Geotraces Cruise, A. S. Wozniak, A. S. Willoughby, S. C. Gurganus, Patrick G. Hatcher

Chemistry & Biochemistry Faculty Publications

The molecular characteristics of aerosol organic matter (OM) determines to a large extent its impacts on the atmospheric radiative budget and ecosystem function in terrestrial and aquatic environments, yet the OM molecular details of aerosols from different sources are not well established. Aerosol particulate samples with North American-influenced, North African-influenced, and marine (minimal recent continental influence) air mass back trajectories were collected as part of the 2011 trans-North Atlantic US GEOTRACES cruise and analyzed for their water soluble OM (WSOM) molecular characteristics using electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry. Principal component analysis (PCA) separated the samples into …

Cyclostationary Empirical Orthogonal Function Sea-Level Reconstruction, B. D. Hamlington, R. R. Leben, M. W. Strassburg, K.-Y. Kim

CCPO Publications

Since 1993, satellite altimetry has provided accurate measurements of sea surface height with near-global coverage. These measurements led to the first definitive estimates of global mean sea-level (GMSL) rise and have improved understanding of how sea levels are changing regionally at decadal time scales. These relatively short records, however, provide no information about the state of the ocean prior to 1993, and with the modern altimetry record spanning only 20 years, the lower frequency signals that are known to be present in the ocean are difficult or impossible to resolve. Tide gauges, on the other hand, have measured sea level …

Krill, Climate, And Contrasting Future Scenarios For Arctic And Antarctic Fisheries, Margaret M. Mcbride, Padmini Dalpadado, Kenneth F. Drinkwater, Olav Rune Godø, Alistair J. Hobday, Anne B. Hollowed, Trond Kristiansen, Eugene J. Murphy, Patrick H. Ressler, Sam Subbey, Eileen E. Hofmann, Harald Loeng

CCPO Publications

Arctic and Antarcticmarine systems have incommon high latitudes, large seasonal changes in light levels, cold air and sea temperatures, and sea ice. In other ways, however, they are strikingly different, including their: age, extent, geological structure, ice stability, and foodweb structure. Both regions contain very rapidly warming areas and climate impacts have been reported, as have dramatic future projections. However, the combined effects of a changing climate on oceanographic processes and foodweb dynamics are likely to influence their future fisheries in very different ways. Differences in the life-history strategies of the key zooplankton species (Antarctic krill in the Southern Ocean …

Global View Of The Role Of The Itcz/Monsoon Trough In Tropical Cyclogenesis, Steven Fuhrman

Legacy Theses & Dissertations (2009 - 2024)

ABSTRACT

Northeast Cool-Season Cyclones Associated With Significant Upper-Level Easterly Wind Anomalies, Adrian Mitchell

Legacy Theses & Dissertations (2009 - 2024)

A subset of Northeast U.S. cool-season cyclones is associated with upper-level easterly flow and, occasionally, well-defined easterly jet streaks. These events occur approximately once per year and may be associated with retrograding surface cyclones and precipitation caused by northerly warm-air advection, leading to forecast challenges. The deepest extratropical cyclone that affected the Northeast U.S. during the 2009-2010 cool-season was associated with an upper-level easterly jet streak, and produced a record snowfall total of 85 cm in Burlington, Vermont. Orographic precipitation enhancement in this case resulted from an interaction of the low-level flow with the complex topography of northern Vermont. This …

Associations Between The Madden-Julian Oscillation, Equatorial Rossby Waves, And Extratropical Northern Hemisphere Predictability, Lawrence Gloeckler

Legacy Theses & Dissertations (2009 - 2024)

The Madden-Julian oscillation (MJO), the leading mode of tropical convective and circulation variability on intraseasonal time scales, has become increasingly leveraged to improve empirical prediction of the global atmospheric circulation. Significant progress has been made in recent years to advance subseasonal (10-30-day) prediction of atmospheric circulation anomalies, and much of this progress can be attributed to the inclusion of information about the phase and amplitude of the MJO in various forecast processes. Despite this progress, however, forecasts based only on the state of the MJO omit information about other important tropical convective and circulation anomalies, and coherent MJO signals are …

Seasonal Variations Of Wind Farm Impacts On Land Surface Temperature And Vegetation Over Northern Illinois, Lauren Slawsky

Legacy Theses & Dissertations (2009 - 2024)

Operating wind turbines enhance near surface turbulence and alter the exchanges of surface energy, water, and momentum, thus affecting local micrometeorology. Climatic impacts of three wind farms in northern Illinois are assessed using land surface temperature (LST) from the Moderate Resolution Imaging Spectroradiometer (MODIS) data onboard the Terra and Aqua satellites for the period 2003-2013. Changes in LST between two periods (before and after construction of the wind turbines) and between wind farm pixels (WFPs) and nearby non wind farm pixels (NNWFPs) are quantified. An increase in LST is observed at nighttime over each wind farm, with the pattern of …

A Climatology Of Central American Gyres, Philippe Pierre Papin

Legacy Theses & Dissertations (2009 - 2024)

Central American gyres (CAGs) are large, low-level, cyclonic circulations that are observed over Central America during the tropical cyclone (TC) season. CAGs often occur in conjunction with TCs, and can result in torrential rainfall over portions of Central America, the Caribbean Islands, and eastern United States. The lack of prior research on CAGs, their apparent links to TC activity, and their association with high- impact weather motivates this study.

Upper-Tropospheric Precursors Associated With Subtropical Cyclone Formation In The North Atlantic Basin, Alicia Marie Bentley

Legacy Theses & Dissertations (2009 - 2024)

Oceanic cyclones exhibiting properties of both tropical and extratropical systems have been categorized as subtropical cyclones (STCs) since the early 1950s. The opportunity to investigate the roles of baroclinic and diabatic processes during the evolution of STCs from a potential vorticity (PV) perspective motivates this study. This study investigates the roles of baroclinic and diabatic processes during the evolution of STCs by calculating three PV metrics from the National Centers for Environmental Prediction Climate Forecast System Reanalysis 0.5° gridded dataset. The three PV metrics quantify the relative contributions of lower-tropospheric baroclinic processes, midtropospheric diabatic heating, and upper-tropospheric dynamical processes during …

An Analysis Of Arctic Climate, The Intense Arctic Cyclone Of Early August 2012, And Middle To High Latitude Snowcover, Adam H. Turchioe

Legacy Theses & Dissertations (2009 - 2024)

On 03 August 2012, a cyclone formed over Central Siberia and progressed northeastwards. By 0000 UTC 05 August, the cyclone reached the Arctic Ocean with a mean sea-level pressure (MSLP) of 984 hPa. Once over the Arctic Ocean, the cyclone rapidly intensified and reached a minimum pressure of 966 hPa on 06 August near 83°N and 170°W. The cyclone slowly weakened, and on 0000 UTC 10 August once again had a minimum MSLP of 984 hPa. The motivation for this presentation is driven by the likelihood that this cyclone is one of the most intense storm systems to ever impact …

On The Mjo And Anticyclonic Wavebreaking, Kyle Macritchie

Legacy Theses & Dissertations (2009 - 2024)

The Madden Julian oscillation (MJO) is the primary mode of intraseasonal variability in the tropics. The MJO often couples with convection as it moves over the Indian Ocean and decouples as it leaves the west Pacific Ocean. The association between convection coupled to the MJO and the midlatitude flow pattern has been the primary focus of numerous studies. In particular, it has been shown that there is a statistical relationship between the position and strength of the MJO and anticyclonic wavebreaking (AWB). This study expands on this statistical relationship by examining, in detail, the two-way relationship between the MJO and …

Old Tools, New View : Utilizing Species Distribution Models To Focus Conservation Efforts Under A Changing Climate, Samantha Hoff

Legacy Theses & Dissertations (2009 - 2024)

In New York State, scientists have observed many changes in bird communities including population declines, range contractions, mismatch between behavior and resources, and changes in bird phenology as a result of climatic changes. Four objectives were addressed with this research: understanding how different bird species may respond to changing climatic conditions under a future IPCC emission scenario; determining how suitable habitat may change in the future and what bioclimatic variables are important to specific avian guilds; identifying hotspots of suitable habitat that may represent important areas for conservation investment; and investigating how managers can incorporate future climate predictions into management …

Spatial And Seasonal Variability Of Cloud Condensation Nuclei Number Concentrations Over The Extended North African Continent And The Mediterranean, Hesham Abdel-Monem Afify Hassan

Legacy Theses & Dissertations (2009 - 2024)

The spatiotemporal variability of cloud condensation nuclei (CCN) number concentration is investigated over the extended domain of the North African continent and Mediterranean which is an essential step for better understanding of aerosol-cloud interactions and associated climate impacts over the region. The study is performed by analyzing the output for the period from 2004 to 2011 from the well-validated global chemistry and aerosol transport model GEOS-Chem-APM. The analysis shows that the dominant aerosol type for CCN number concentration is secondary particles all over the domain. Spatial analysis reveals the existence of four characteristic subdomains of variability: over the Mediterranean and …

A Climatology Of Lower-Stratospheric Fronts Over North America, Hannah Elizabeth Attard

Legacy Theses & Dissertations (2009 - 2024)

A two-part analysis, from a: (1) climatology and composite and (2) case study perspective, were used to examine robust lower-stratospheric fronts identified during eight winter seasons from 2004-2012 in North America. In Part 1, a climatology was constructed from the 184 identified cases of North American lower-stratospheric fronts associated with upper-level jet-front systems. The climatology and composite analyses of these identified cases reveal that there are substantial differences in the environmental characteristics and structure of lower-stratospheric fronts that develop in the Intermountain West and eastern North America regions. These differences exist in all flow directions and suggest that quasigeostrophic diagnostics …

The Spectrum Of Progressive Derecho Formation Environments, Corey Guastini

Legacy Theses & Dissertations (2009 - 2024)

Progressive derechos are severe mesoscale convective systems that often form east of the Rocky Mountains during the warm season (May–August) and cause, by definition, straight-line wind damage along paths upwards of 400 km long. This study develops a subjective, seven-category classification scheme that spans the spectrum of progressive derecho formation environments from those dominated by robust upper-level ridges to those characterized by vigorous upper-level troughs. A climatology of 256 progressive derecho events is created for 1996–2013 and is categorized according to the developed classification scheme. Derecho initiation-relative composites are constructed for each of the seven groups using 0.5° Climate Forecast …

Dynamical And Thermodynamic Processes Contributing To Thundersnow Events Over The Northeast U.S, Kyle Jacob Meier

Legacy Theses & Dissertations (2009 - 2024)

Thundersnow often occurs in conjunction with mesoscale snowbands and may be associated with regions of locally heavy snowfall (15-30 cm) and intense snowfall rates (5-10 cm/h). The availability of the National Lightning Detection Network (NLDN) system and operational Doppler weather radars during the past 20 years has allowed meteorologists to produce comprehensive national lightning maps and to identify localized areas of enhanced snowfall associated with thundersnow. The purpose of this thesis is to take advantage of the NLDN data and other contemporary observing systems in order to construct climatological, composite, and case study analyses of the atmospheric environment during thundersnow …

Adverse Outcome Pathway And Risks Of Anticoagulant Rodenticides To Predatory Wildlife, Barnett A. Rattner, Rebecca S. Lazarus, John E. Elliott, Richard F. Shore, Nico Van Den Brink

United States Geological Survey: Staff Publications

Despite a long history of successful use, routine application of some anticoagulant rodenticides (ARs) may be at a crossroad due to new regulatory guidelines intended to mitigate risk. An adverse outcome pathway for ARs was developed to identify information gaps and end points to assess the effectiveness of regulations. This framework describes chemical properties of ARs, established macromolecular interactions by inhibition of vitamin K epoxide reductase, cellular responses including altered clotting factor processing and coagulopathy, organ level effects such as hemorrhage, organism responses with linkages to reduced fitness and mortality, and potential consequences to predator populations. Risk assessments have led …

Capacitively Coupled And Direct-Current Resistivity Surveys Of Selected Reaches Of Cozad, Thirty-Mile, Orchard-Alfalfa, Kearney, And Outlet Canals In Nebraska, 2012-13, Christopher M. Hobza, Bethany L. Burton, Jeffrey E. Lucius, Ryan E. Tompkins

United States Geological Survey: Water Reports and Publications

Understanding the spatial characteristics of leakage from canals is critical to effectively managing and utilizing water resources for irrigation and hydroelectric purposes. Canal leakage in some parts of Nebraska is the primary source of water for groundwater recharge and helps maintain the base flow of streams. Because surface-water supplies depend on the streamflow of the Platte River and the available water stored in upstream reservoirs, water managers seek to minimize conveyance losses, which can include canal leakage. The United States Geological Survey, in cooperation with the Central Platte Natural Resources District and Nebraska Public Power District, used capacitively coupled (CC) …