Oceanography and Atmospheric Sciences and Meteorology Commons^™

Dinitrogen Fixation And Release Of Ammonium And Dissolved Organic Nitrogen By Trichodesmium Ims101, Margaret R. Mulholland, Deborah A. Bronk, Douglas G. Capone

OES Faculty Publications

Two methods used to measure dinitrogen (N₂) fixation (acetylene reduction and ¹⁵N₂ uptake) often result in different N₂ fixation rates. Part of the discrepancy may arise from the observation that Trichodesmium can release a fraction of their recently fixed N₂ as dissolved organic nitrogen (DON) and/or ammonium (NH4 ⁺). To resolve outstanding issues regarding N₂ fixation and the production of dissolved combined nitrogen (N) by Trichodesmium, we conducted a comprehensive analysis of N₂ fixation and the production of DON and NH₄⁺ in cultures of Trichodesmium IMS101. We performed …

A Holocene Record Of Changing Arctic Ocean Ice Drift Analogous To The Effects Of The Arctic Oscillation, Dennis A. Darby, Jens F. Bischof

OES Faculty Publications

The Arctic Oscillation (AO) controls the configuration of the Transpolar Drift (TPD). If thicker ice from the Beaufort Gyre were exported, the volume of fresh water/sea ice in the Nordic seas would significantly increase, decreasing the formation of North Atlantic deep water. This would cool large parts of the Northern Hemisphere and affect global climate. Therefore, in order to understand how the global climate system functions, it is imperative to know how the TPD changed over the last millennium or more. The provenance of grains in a sediment core located near the confluence of the TPD and the Beaufort Gyre …

Advection, Krill, And Antarctic Marine Ecosystems, Eileen E. Hofmann, Eugene J. Murphy

CCPO Publications

Advective processes are recognized as being important in structuring and maintaining marine ecosystems. In the Southern Ocean advective effects are perhaps most clearly observed because the Antarctic Circumpolar Current (ACC) provides a connection between most parts of the system, including open ocean and continental shelf regions. The ACC also provides a mechanism for large-scale transport of plankton, such as Antarctic krill (Euphousia superba Dana), which is an important component of the Southern Ocean food web. This overview provides a summary of recent observational and modelling results that consider the importance of advection to the Southern Ocean ecosystem and, in particular, …

Estimation Of Drag Coefficient In James River Estuary Using Tidal Velocity Data From A Vessel-Towed Adcp, Chunyan Li, Arnoldo Valle-Levinson, Larry P. Atkinson, Kuo Chuin Wong, Kamazima M. M. Lwiza

CCPO Publications

[1] A phase-matching method is introduced to calculate the bottom drag coefficient in tidal channels with significant lateral variation of depth. The method is based on the fact that the bottom friction in a tidal channel causes tidal velocity to have a phase difference across the channel. The calculation involves a few steps. First, the observed horizontal velocity components are analyzed to obtain the amplitude and phase of the velocity at the major tidal frequency. The phase of the longitudinal velocity is then fitted to a relationship derived from the linearized momentum balance. The drag coefficient is then calculated. This …

Numerical Study Of The Diapycnal Flow Through A Tidal Front With Passive Tracers, Chingming Dong, Robert Houghton, Hsien-Wang Ou, Dake Chen, Tal Ezer

CCPO Publications

A two-dimensional numerical model is used to study the diapycnal flow through a tidal front with passive tracers. In a basic numerical experiment a passive tracer is released into the bottom water at the offshore edge of a tidal front, and it subsequently moves on-bank with a velocity that decreases with time. This qualitatively agrees with a recent field experiment using a dye tracer on Georges Bank. Additional experiments are performed to investigate the sensitivity of the tracer dispersion to the tidal phase and the location of tracer release within the front. As the release point is moved on-bank across …

Simulations Of The Influence Of The West Caribbean Sea Circulation And Eddies On The Meso-American Barrier Reef System, Tal Ezer, Deeptha V. Thattai, Björn Kjerve

CCPO Publications

The Meso-American Barrier Reef System (MBRS) along the coasts of Mexico, Belize, Guatemala, and Honduras is an ecologically and biologically sensitive region. It provides for example, major spawning aggregation sites for various species of fish; these activities may be influenced by variations of the flow near the reef and the transports between the MBRS and the Caribbean Sea circulation. Caribbean eddies, which may play an important role in flow variability, have been studied in the past by observations and models (Carton and Chao, 1999; Murphy et al., 1999; Andrade and Barton, 2000; Oey et al., 2003), but knowledge of their …

On The Sensitivity Of The West Caribbean Sea Circulation To Tides, Wind, And Mesoscale Ocean Eddies: A Three-Dimensional Ocean Model Study, Deeptha V. Thattai, Tal Ezer, Bjorn Kjerfve

CCPO Publications

A three-dimensional, primitive equation ocean model is used to study the circulation in the West Caribbean Sea (WCS) region, and to test the sensitivity of the coastal flow to various forcing fields such as tides, climatological wind, and Caribbean eddies. The model domain is bordered by latitudes 15 – 22 degrees N and longitudes 76 – 87 degrees W, with the MesoAmerican Barrier Reef System (MBRS, along the coasts of Mexico, Belize, Guatemala, and Honduras) and the southern coast of Cuba as land boundaries. The WCS is open to the Caribbean Sea in the southeast and the Yucatan Channel in …

A Modelling Study Of The Influence Of Environment And Food Supply On Survival Of Crassostrea Gigas Larvae, Eileen E. Hofmann, Eric N. Powell, Eleanor A. Bochenek, John M. Klinck

CCPO Publications

A biochemically based model was developed to simulate the growth, development, and metamorphosis of larvae of the Pacific oyster (Crassostrea gigas). The unique characteristics of the model are that it: (1) defines larvae in terms of their protein, neutral lipid, polar lipid, carbohydrate, and ash content; (2) tracks weight separately from length to follow larval condition; and (3) includes genetic variation in growth efficiency and egg quality to better simulate cohort population dynamics. The model includes parameterizations for filtration, ingestion, and respiration, which determine larval growth rate, and processes controlling larval mortality and metamorphosis. Changes in larval tissue …

Lagrangian Modelling Studies Of Antarctic Krill (Euphausia Superba) Swarm Formation, Eileen E. Hofmann, A. G. Edward Haskell, John M. Klinck, Cathy M. Lascara

CCPO Publications

A two-dimensional Lagrangian particle model was developed to examine the spatial distribution of Antarctic krill (Euphausia superba). The time-dependent location of particles, which represent krill individuals, is determined by random diffusion, foraging activity, and movement induced by the presence of neighbours. Foraging activity is based on prescribed food conditions and is such that krill swim slower and turn more frequently in areas of high food concentration. The presence or absence of neighbours either disperses krill, if the local concentrations become too dense, or coalesces krill, if concentrations become too dilute, respectively. Predation on krill is included and affects …

Satellite Evidence Of Hurricane-Induced Phytoplankton Blooms In An Oceanic Desert, S. M. Babin, J. A. Carton, T. D. Dickey, J. D. Wiggert

CCPO Publications

The physical effects of hurricanes include deepening of the mixed layer and decreasing of the sea surface temperature in response to entrainment, curl-induced upwelling, and increased upper ocean cooling. However, the biological effects of hurricanes remain relatively unexplored. In this paper, we examine the passages of 13 hurricanes through the Sargasso Sea region of the North Atlantic during the years 1998 through 2001. Remotely sensed ocean color shows increased concentrations of surface chlorophyll within the cool wakes of the hurricanes, apparently in response to the injection of nutrients and/or biogenic pigments into the oligotrophic surface waters. This increase in post-storm …

Modeled And Observed Empirical Orthogonal Functions Of Currents In The Yucatan Channel, Gulf Of Mexico, Lie-Yauw Oey, Tal Ezer, Wilton Sturges

CCPO Publications

Candela et al. [2003] have reported empirical orthogonal function (EOF) analyses based on 23-month current-meter and acoustic Doppler current profiler measurements in the Yucatan Channel. Those authors noted the difference between EOFs obtained from observations and their z-level models and EOFs calculated by Ezer et al. [2003] from the results of a terrain-following model. Here a new analysis is reported that explains this difference, and that also suggests the importance of shelf-edge meander mode of the core Loop Current in the channel. We show that the terrain-following model gives EOFs with characteristics similar to those observed when data from the …

Phytoplankton Composition Within The Tidal Freshwater-Oligohaline Regions Of The Rappahannock And Pamunkey Rivers In Virginia, Harold G. Marshall, Lubomira Burchardt

Biological Sciences Faculty Publications

The Rappahannock River is a major river system across north central Virginia prior to entering the Chesapeake Bay. In contrast, the Pamunkey River is smaller in size and joins the Mattoponi River to form the York River, which flows parallel to the Rappahannock before it also flows into Chesapeake Bay. A unique mixing area for both flora and environmental conditions exists in the tidal freshwater-oligohaline region of both rivers. This is a dynamic mixing section where freshwater and estuarine species are subject to the interaction of river flow and daily tidal rhythms. The phytoplankton composition in this region of the …

An Investigation Of Dissolved Organic Matter In A Shallow Coastal Bay Subject To Aureococcus Anophagefferens Blooms, Jean-Paul Simjouw

OES Theses and Dissertations

Aureococcus anophagefferens, the pelagophyte responsible for brown tide blooms, was identified in Chincoteague Bay in 1997 and has “bloomed” there since at least 1998. Aureococcus anophagefferens is capable of using dissolved organic nitrogen (DON) and dissolved organic carbon (DOC) substrates to support growth, and this utilization is hypothesized to give the organism a competitive advantage relative to other phytoplankton when inorganic nutrient concentrations are low or depleted. Because previous studies suggest dissolved organic matter (DOM) is important in initiating and sustaining brown tide blooms, a field study of the variations in DOC concentration and DOM composition was performed at …

Inter-Annual To Inter-Decadal Variability Of Upwelling And Anchovy Population Off Northern Chile, Jose L. Blanco-Garcia

OES Theses and Dissertations

The coastal ocean of northern Chile has persistent wind-driven upwelling that produces high nutrient and chlorophyll concentrations in a narrow band along the coast. The objective of this thesis is to study the low frequency temporal variability of the upwelling system, to understand the spatial and temporal changes in the wind field, and how these changes may affect the upwelling and anchovy variability. Data used in this thesis includes time series of wind, sea level, sea surface temperature, and atmospheric pressure at coastal stations, from 1960 to 2003, and oceanographic and acoustic cruises for the period 1993–2003. The time series …

Strong Mid-Depth Currents And A Deep Cyclonic Gyre In The Gulf Of Mexico, Wilton Sturges, Eric Chassignet, Tal Ezer

CCPO Publications

The main purpose of this work was to explore the possibility that the deep flow (~2000m) around the edges of the Gulf circulates in a cyclonic, or counter-clockwise direction. The existence of such flow was proposed on theoretical grounds but had not been previously documented. Our results are quite clear that such flow is reliably observed.

Wind-Induced Exchange In Semi-Enclosed Basins, Rosario Sanay

OES Theses and Dissertations

The wind-induced circulation over laterally varying bathymetry was investigated in homogeneous and in stratified systems using the three-dimensional Regional Ocean Model (ROMS). For homogeneous systems, the focus was to describe the influence of the earth's rotation on the lateral distribution of the flow with particular emphasis on the transverse circulation. Along-basin wind-stress with no rotation caused a circulation dominated by an axially symmetric transverse structure consisting of downwind flow over the shoals and upwind flow in the channel along the whole domain. Transverse circulation was important only at the head of the system where the water sank and reversed direction …

Atmospheric Water Vapor Lidar Measurements Using Analog And Photon Counting Techniques, Anuj Maheshkumar Shah

Electrical & Computer Engineering Theses & Dissertations

Atmospheric water vapor measurements are essential for the understanding of Earth's weather and radiation budget, along with the water cycle. The remote sensing Differential Absorption Lidar (DIAL) technique is a commanding method used for water vapor measurements from aircraft, spaceborne, and ground-based platforms. The new unmanned aerial vehicle (UAV) water vapor DIAL system provides great feasibility due to the weight and size limitations. The system has significantly less weight, power consumption, and noise presence, thus making it great for UAV applications.

This thesis discusses a UAV water vapor DIAL system that was designed, developed, and evaluated. The research effort was …

Circulation, Vol. 10, No. 1, Center For Coastal Physical Oceanography, Old Dominion University, Thomas Royer

CCPO Circulation

Spring 2003 issue of CCPO Circulation featuring article "R/V Fay Slover Is Here" by Dr. Thomas Royer

Measurement Of Proton Transfer Reaction Rates In A Microwave Cavity Discharge Flowing Afterglow, George M. Brooke Iv

Physics Theses & Dissertations

The reaction rate coefficients between the hydronium ion and the molecules ethene (C₂H₄), propene (C₃H₆), 1-butene (C₄H₈) and hydrogen sulfide (H₂S) were measured at 296 K. The measured reaction rates were compared to collision rates calculated using average dipole orientation (ADO) theory. Reaction efficiency depends primarily upon the proton affinity of the molecules. All the measurements were obtained using the newly developed microwave cavity discharge flowing afterglow (MCD-FA) apparatus. This device uses an Asmussen-type microwave cavity discharge ion source that is …

Experimental Investigation Of Elemental Incorporation In The Otoliths Of Larval And Juvenile Fish: Implications For Use As Environmental Recorders, Gretchen Bath Martin

Biological Sciences Theses & Dissertations

Innovative techniques for discerning fish stocks, identifying nursery habitats, locating spawning sites, tracing larval transport pathways, and quantifying the degree of population connectivity are required to meet the goals of sustainable management of marine capture fisheries. One of the most promising techniques is the use of elemental signatures in fish otoliths (ear stones), which record valuable life history data and serve as the link between fish and their environment. To validate the assumption that otolith elemental composition is a function of water elemental concentrations, and to address the possible effects of external variables such as temperature and salinity, the composition …

Effects Of Epiphyte Load On Optical Properties And Photosynthetic Potential Of The Seagrasses Thalassia Testudinum Banks Ex König And Zostera Marina L, Lisa A. Drake, Fred C. Dobbs, Richard C. Zimmerman

OES Faculty Publications

The biomass and optical properties of seagrass leaf epiphytes were measured to evaluate their potential impact on the photosynthetic performance of the seagrasses Thalassia testudinum Banks ex König (turtlegrass) and Zostera marina L. (eelgrass). Turtlegrass was obtained from oligotrophic waters near Lee Stocking Island, Bahamas; eelgrass was collected from a eutrophic environment in Monterey Bay, California. Leaf–epiphyte loads were characterized visually and quantified using measurements of their phospholipid biomass. Light absorption and reflectance of the intact epiphyte layer were determined spectrophotometrically. Turtlegrass epiphytes from the oligotrophic site absorbed a maximum of 36% of incident light in peak chlorophyll absorption …

A Biooptical Model Of Irradiance Distribution And Photosynthesis In Seagrass Canopies, Richard C. Zimmerman

OES Faculty Publications

Although extremely vulnerable to coastal eutrophication, seagrasses represent important structuring elements and sources of primary production in shallow waters. They also generate an optical signature that can be tracked remotely. Accurate knowledge of light absorption and scattering by submerged plant canopies permits the calculation of important plant- and ecosystem-level properties, including rates of photosynthesis, vegetation abundance, and distribution. The objectives of this study were to develop a realistic, yet simply parameterized two-flow model of plane irradiance distribution through a seagrass canopy submerged in an optically active water column, to evaluate its performance against in situ measurements, and to explore the …

Extracellular Enzyme Activity And Uptake Of Carbon And Nitrogen Along An Estuarine Salinity And Nutrient Gradient, Margaret R. Mulholland, Cindy Lee, Patricia M. Gilbert

OES Faculty Publications

Amino acid oxidation (AAO) and peptide hydrolysis (PH) are processes affecting the recycling of organic material and nutrients. We compared extracellular AAO and PH rates to C and N uptake rates along estuarine gradients of salinity, nutrients and productivity in the Pocomoke River, a subestuary of the Chesapeake Bay. This estuary is seasonally depleted in inorganic N, and rich in dissolved organic material (DOM) throughout the year. AAO, PH, and N uptake rates measured in 1999 and 2000 were not limited to particular size fractions measured, or to auto- or heterotrophic groups of organisms. At a station near the turbidity …

Sources Of Sediment Found In Sea Ice From The Western Arctic Ocean, New Insights Into Processes Of Entrainment And Drift Patterns, Dennis A. Darby

OES Faculty Publications

The geochemical fingerprint of entrained Fe oxide mineral grains in Arctic Ocean sea ice is used to determine precise sources of this sediment. This approach substantiates the importance of the Laptev Sea as a source of sea ice and even the presence of Russian ice in the Beaufort Sea off Alaska. Fe oxide grains from the Laptev Sea were found in floes in the Beaufort Sea, Chukchi Borderland, and central Arctic Ocean, demonstrating the importance of sea ice in distributing itself throughout the Arctic Ocean and the potential of transporting sediment from Russian rivers to North American shelves. Banks Island …

New Evidence For Enhanced Ocean Primary Production Triggered By Tropical Cyclone, I. Lin, W. Timothy Liu, Chun-Chieh Wu, George T. F. Wong, Chuanmin Hu, Zhiqiang Chen, Wen-Der Liang, Yih Yang, Kon-Kee Liu

OES Faculty Publications

[1] New evidence based on recent satellite data is presented to provide a rare opportunity in quantifying the long-speculated contribution of tropical cyclones to enhance ocean primary production. In July 2000, moderate cyclone Kai-Tak passed over the South China Sea (SCS). During its short 3-day stay, Kai-Tak triggered an average 30-fold increase in surface chlorophyll-a concentration. The estimated carbon fixation resulting from this event alone is 0.8 Mt, or 2-4% of SCS's annual new production. Given an average of 14 cyclones passing over the SCS annually, we suggest the long-neglected contribution of tropical cyclones to SCS's annual new production may …

The Variability Of Currents In The Yucatan Channel: Analysis Of Results From A Numerical Ocean Model, Tal Ezer, Lie-Yauw Oey, Hyun-Chul Lee, Wilton Sturges

CCPO Publications

The flow through the Yucatan Channel and into the Gulf of Mexico is a major component of the Gulf Stream and the subtropical gyre circulation. Surprisingly, however, little is known about the forcing and physical parameters that effect the current structures in the Channel. This paper attempts to improve our understanding of the flow through the Channel with a detailed analysis of the currents obtained from a primitive-equation model that includes the Gulf and the entire Caribbean Sea and forced by 6-hourly wind from ECMWF. The analysis includes two parts: First, the overall statistics of the model results, including the …

Near-Surface Currents In Desoto Canyon (1997–99): Comparison Of Current Meters, Satellite Observation, And Model Simulation, Dong-Ping Wang, Lie-Yauw Oey, Tal Ezer, Peter Hamilton

CCPO Publications

This study evaluates a data-assimilated model simulation of near-surface circulation in DeSoto Canyon (DSC), Gulf of Mexico, with emphasis on analyzing moored current-meter observations and comparing them with satellite data and model results. The study period is for two years from April 1997 to April 1999. The model results are from a high-resolution Gulf of Mexico model forced by analyzed wind and surface heat flux. Two types of data are used to deduce near-surface circulation: moored current meters at 13 locations in the DSC, and satellite sea level anomaly. The moored currents are mapped through multivariate objective analysis to produce …

The Temporally Filtered Navier-Stokes Equations: Propertes Of The Residual Stress, C. D. Pruett, T. B. Gatski, Chester E. Grosch, W. D. Thacker

CCPO Publications

Recent interest in the development of a unifying framework among direct numerical simulations, large-eddy simulations, and statistically averaged formulations of the Navier-Stokes equations, provides the motivation for the present paper. Toward that goal, the properties of the residual (subgrid-scale) stress of the temporally filtered Navier-Stokes equations are carefully examined. This includes the frame-invariance properties of the filtered equations and the resulting residual stress. Causal time-domain filters, parametrized by a temporal filter width 0infinity, the residual stress is equivalent to the long-time averaged stress, and the Reynolds-averaged Navier-Stokes equations are recovered from the temporally filtered equations. The predicted behavior at the …

Bio-Optical Properties Of The Labrador Sea, Glenn F. Cota, W. Glen Harrison, Trevor Platt, Shubha Sathyendranath, Venetia Stuart

CCPO Publications

Three cruises were conducted during fall and spring in the Labrador Sea to investigate the effects of bio-optical properties on satellite retrievals of phytoplankton chlorophyll in this important high-latitude ecosystem. Taxon-specific and regional differences were found. Diatoms had similar to 1.5 lower chlorophyll-specific absorption but significantly higher reflectance ratios than prymnesiophytes. Particulate absorption at 443 nm for total, phytoplankton, and "detrital'' fractions was related to chlorophyll, but values were lower than reported for lower latitudes. Decreased particulate absorption is attributed primarily to pigment packaging, while low backscattering to scattering ratios result from a lower relative abundance of bacteria and picophytoplankton …

Reversing Circulation Patterns In A Tropical Estuary, Arnoldo Valle-Levinson, Kathryn T. Bosley

CCPO Publications

A combination of current velocity and water density measurements was used to characterize the basic patterns of water exchange in the Gulf of Fonseca, a tropical estuary on the Pacific Ocean side of Central America. The measurements were obtained during spring and neap tides in March ( dry season) and June ( wet season) of 2001 and consisted of profiles of current velocity and density along four transects. From mid-March to mid-April a time series of hourly surface current velocity maps was also obtained with a high-frequency radar system of two antennas. The sampling transects and the radar coverage concentrated …