Oceanography and Atmospheric Sciences and Meteorology Commons^™

"The Effects Of Ocean Warming And Sedimentation On The Survival And Growth Of Acropora Cervicornis" And "Differential Prevalence Of Chimerism During Embryogenesis In Corals", Hayley De Marchis

HCNSO Student Theses and Dissertations

Part I:

Coral reefs are essential to coastal economies, protecting coastlines from storms, and harboring high biodiversity. However, reefs are declining due to local anthropogenic stressors and ocean warming. Sedimentation, a local stressor, aggravates the impacts of warming on corals and hinders their survival and growth. Therefore, it is important to investigate whether sedimentation and temperature have a synergistic effect on vulnerable coral species, especially during earlier stages of development. To quantify these effects, survival and growth of newly settled Acropora cervicornis corals were measured at two temperatures (29 and 31°C, representing current and predicted for 2050 Summer temperatures) and …

Evaluating The Ecological Status Of The Introduced Nile Monitor (Varanus Niloticus) In Florida: Forecasting Presence And Population Expansion Using Computational Geographic Information Systems, Noah G. Cohen

HCNSO Student Theses and Dissertations

The Nile monitor (Varanus niloticus) is a large, carnivorous lizard that has become a notorious invasive species in Florida, USA. Initially released in the 1980s from the pet trade, the species has since established at least three breeding populations and spread throughout much of southern Florida. While current control efforts have failed to eradicate V. niloticus, it is important to attain a better understanding of its invasive dynamics to guide and inform better control strategies. In this study, available georeferenced records of V. niloticus in Florida were compiled and linked to a habitat classification map to evaluate ecotype preferences. Factored …

Microbial And Genomic Analysis Of Environmental Samples In Search Of Pathogenic Salmonella, Jorie L. Skutas

HCNSO Student Theses and Dissertations

Salmonellosis or “food poisoning” is a foodborne infection brought on by the pathogen Salmonella from the ingestion of the bacterium on contaminated foods such as vegetables. Infection from Salmonella leads to the highest incidence of hospitalizations and deaths each year, compared to any other bacterial foodborne illness. South Florida is the second largest agricultural winter vegetable producer in the United States, and contamination of vegetables is often observed in preharvest practices. A hardy bacterium, Salmonella, has been shown to live up to 6 weeks in soil and water up to 42°C without a host.

The Florida Everglades is a tropical …

Emerging Hotspot Analysis Of Florida Manatee (Trichechus Manatus Latirostris) Mortality (1974-2012), Crystal Ann Bass

HCNSO Student Theses and Dissertations

The Florida manatee (Trichechus manatus latirostris) is a protected species that is vulnerable to both anthropogenic and natural causes of mortality. The ability of wildlife managers to oversee regulation of this species is based on available abundance estimates and mortality data. Using existing manatee mortality data collected by Florida Fish and Wildlife Conservation Commission (FWC) from 1974-2012, this study focuses on identifying significant spatial clusters of high values or “hotspots” of manatee mortality and the temporal patterns of these hotspots using the novel “emerging hotspot analysis” ArcGIS tool. The categories of manatee mortality included in this analysis were …

Cruise Data For Neuston Net And Paired Bongo Net Tows From 47 Stations In The Northern Gulf Of Mexico From R/V Pelican Cruise Lf2017a July 2017, Jay R. Rooker, R.J. David Wells

DEEPEND Datasets

Shelf and slope waters in the Deep Water Horizon oil spill (DWHOS) area are known to serve as critical spawning, nursery, and foraging habitat of several important oceanic species including billfishes (e.g. blue marlin, white marlin, sailfish), tunas (bluefin tuna, yellowfin tuna), and other pelagic taxa (swordfish, dolphinfishes). The aim of this component was to further investigate potential ecological effects of the DWHOS on pelagic fishes during the early life period. Larval fishes were sampled from 48 stations in the northern Gulf of Mexico and cruise data was collected at each site including latitude/longitude, date, time and environmental data (sea …

Dietary Transfer Of Heavy Metals In Manatees, E. M. Smith, Dimitri Giarikos, A. Daniels, Amy Hirons

Chemistry and Physics Faculty Proceedings, Presentations, Speeches, Lectures

In recent decades, manatees and dugongs globally have exhibited potentially detrimental levels of a variety of heavy metals in their body tissues. The threatened Florida manatee (Trichechus manatus latirostris), which is a subspecies of the West Indian manatee (Trichechus manatus), has shown corresponding high levels of heavy metals in their blood, skin, liver, and kidneys. As obligate herbivores, these animals rely heavily upon seagrasses as a major component of their diet. Globally, seagrasses at low latitudes have high levels of heavy metals in their tissues. Detrimental levels of heavy metals in Sirenians have not been established …

North Pacific Marine Mammals Populations Rocked By Heavy Metal Concentrations, Pilar Ferdinando, Chitra Gotluru, Tanya Juneja, Kevin Cash, Karanja Sekou, Emily Pope, L. K. Duffy, Dimitri Giarikos, Amy Hirons

Chemistry and Physics Faculty Proceedings, Presentations, Speeches, Lectures

No abstract provided.

A Comparison Of The Rate Of Oxygen Store Development In Phocid Sealsq, Rachael Stevenson, Tamara Frank, Amy Hirons

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

No abstract provided.

Peruvian Pinnipeds As Archivist Of Enso Effects Off The Coast Of Peru, Mickie Edwards, Michael Adkesson, Susana Cardenas-Alayza, Amy Hirons

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

No abstract provided.

The Sponge Microbiome Project, Lucas Moitinho-Silva, Shaun Nielsen, Amnon Amir, Antonio Gonzalez, Gail Ackermann, Carlo Cerrano, Carmen Astudillo-Garcia, Cole Easson, Detmer Sipkema, Fang Liu, Georg Steinert, Giorgos Kotoulas, Grace Mccormack, Guofang Feng, James J. Bell, Jan Vicente, Johannes R. Bjork, Jose M. Montoya, Julie B. Olson, Julie Reveillaud, Laura Steindler, Mari-Carmen Pineda, Maria V. Marra, Micha Ilan, Michael W. Taylor, Paraskevi Polymenakou, Patrick M. Erwin, Peter J. Schupp, Rachel L. Simister, Rob Knight, Robert W. Thacker, Rodrigo Costa, Russell T. Hill, Susanna Lopez-Legentil, Thanos Dailianis, Timothy Ravasi, Ute Hentschel, Zhiyong Li, Nicole S. Webster, Torsten Thomas

Marine & Environmental Sciences Faculty Articles

Marine sponges (phylum Porifera) are a diverse, phylogenetically deep-branching clade known for forming intimate partnerships with complex communities of microorganisms. To date, 16S rRNA gene sequencing studies have largely utilised different extraction and amplification methodologies to target the microbial communities of a limited number of sponge species, severely limiting comparative analyses of sponge microbial diversity and structure. Here, we provide an extensive and standardised dataset that will facilitate sponge microbiome comparisons across large spatial, temporal, and environmental scales. Samples from marine sponges (n = 3569 specimens), seawater (n = 370), marine sediments (n = 65) and other …

Additive Negative Effects Of Anthropogenic Sedimentation And Warming On The Survival Of Coral Recruits, Francesca Fourney, Joana Figueiredo

Marine & Environmental Sciences Faculty Articles

Corals worldwide are facing population declines due to global climate change and local anthropogenic impacts. Global climate change effects are hard to tackle but recent studies show that some coral species can better handle climate change stress when provided with additional energy resources. The local stressor that most undermines energy acquisition is sedimentation because it impedes coral heterotrophic feeding and their ability to photosynthesize. To investigate if reducing local sedimentation will enable corals to better endure ocean warming, we quantitatively assessed the combined effects of increased temperature and sedimentation (concentration and turbidity) on the survival of coral recruits of the …

Non‐Linear Thresholds Characterize The Relationship Between Reef Fishes And Mangrove Habitat, Geoffrey S. Shideler, Rafael J. Araujo, Brian K. Walker, Jeremiah Blondeau, Joseph E. Serafy

Marine & Environmental Sciences Faculty Articles

A significant obstacle to evaluating the importance of mangrove habitat to coral reef fishes has been the difficulty of disentangling its effects from other subtidal/nearshore habitats or human population pressures. Florida's seascape, unlike most others, has been extensively surveyed and mapped, and there are reliable estimates of human population density. Despite many studies that have correlated reef fish abundance with nearby mangrove habitat, some researchers continue to question the importance of mangroves to reef fishes. Previous studies that have investigated the mangrove–reef fish subsidy effect have applied methods that either compared averages or examined linear relationships; yet there is a …

The Trophic Role Of A Large Marine Predator, The Tiger Shark Galeocerdo Cuvier, Luciana C. Ferreira, Michele Thums, Michael R. Heithaus, Adam Barnett, Katya G. Abrantes, Bonnie J. Holmes, Lara M. Zamora, Ashley J. Frisch, Julian G. Pepperell, Derek Burkholder, Jeremy Vaudo, Robert Nowicki, Jessica Meeuwig, Mark G. Meekan

Marine & Environmental Sciences Faculty Articles

Tiger sharks were sampled off the western (Ningaloo Reef, Shark Bay) and eastern (the Great Barrier Reef; GBR, Queensland and New South Wales; NSW) coastlines of Australia. Multiple tissues were collected from each shark to investigate the effects of location, size and sex of sharks on δ13C and δ15N stable isotopes among these locations. Isotopic composition of sharks sampled in reef and seagrass habitats (Shark Bay, GBR) reflected seagrass-based food-webs, whereas at Ningaloo Reef analysis revealed a dietary transition between pelagic and seagrass food-webs. In temperate habitats off southern Queensland and NSW coasts, shark diets relied on pelagic food-webs. Tiger …

A Global Biogeographic Classification Of The Mesopelagic Zone, Tracey Sutton, Malcolm R. Clark, Daniel C. Dunn, Patrick N. Halpin, Alex D. Rogers, John Guinotte, Steven J. Bograd, Martin V. Angel, Jose Angel A. Perez, Karen Wishner, Richard L. Haedrich, Dhugal Lindsay, Jeffrey C. Drazen, Alexander Vereshchaka, Uwe Piatkowski, Telmo Morato, Katarzyna Blachowiak-Samolyk, Bruce H. Robison, Kristina Gjerde, Annelies Pierrot-Bults, Patricio Bernal, Gabriel Reygondeau, Mikko Heino

Marine & Environmental Sciences Faculty Articles

We have developed a global biogeographic classification of the mesopelagic zone to reflect the regional scales over which the ocean interior varies in terms of biodiversity and function. An integrated approach was necessary, as global gaps in information and variable sampling methods preclude strictly statistical approaches. A panel combining expertise in oceanography, geospatial mapping, and deep-sea biology convened to collate expert opinion on the distributional patterns of pelagic fauna relative to environmental proxies (temperature, salinity, and dissolved oxygen at mesopelagic depths). An iterative Delphi Method integrating additional biological and physical data was used to classify biogeographic ecoregions and to identify …

Dna Analysis Of Traded Shark Fins And Mobulid Gill Plates Reveals A High Proportion Of Species Of Conservation Concern, Dirk Steinke, Andrea Bernard, Rebekah L. Horn, Paul Hilton, Robert H. Hanner, Mahmood S. Shivji

Marine & Environmental Sciences Faculty Articles

Continuously increasing demand for plant and animal products causes unsustainable depletion of biological resources. It is estimated that one-quarter of sharks and rays are threatened worldwide and although the global fin trade is widely recognized as a major driver, demand for meat, liver oil, and gill plates also represents a significant threat. This study used DNA barcoding and 16 S rRNA sequencing as a method to identify shark and ray species from dried fins and gill plates, obtained in Canada, China, and Sri Lanka. 129 fins and gill plates were analysed and searches on BOLD produced matches to 20 species …

Dna Analysis Of Surfactant-Associated Bacteria In A Natural Sea Slick In The Gulf Of Mexico Observed By Terrasar-X, Kathryn Howe

HCNSO Student Theses and Dissertations

Under low wind speed conditions, surfactants accumulate at the air-sea interface, dampen short-gravity capillary (Bragg) waves, and form natural sea slicks that are detectable visually and in synthetic aperture radar (SAR) imagery. Marine organisms, such as phytoplankton, zooplankton, seaweed, and bacteria, produce and degrade surfactants during various life processes. This study coordinates in situ sampling with TerraSAR-X satellite overpasses in order to help guide microbiological analysis of the sea surface microlayer (SML) and associated subsurface water (SSW). Samples were collected in the Gulf of Mexico during a research cruise (LASER) in February 2016 to determine abundance of surfactant associated bacteria …

Evidence Of Intermittent Residency In The Northern Fur Seal (Callorhinus Ursinus)., Megan Foley

HCNSO Student Theses and Dissertations

This study found evidence of intermittent, multi-year residency periods in northern fur seals (Callorhinus ursinus) using stable isotope ratios in vibrissae and canine teeth. Northern fur seals migrate from the Bering Sea during summer months to lower latitudes and slightly warmer waters of the northeastern Pacific Ocean and California Current in the winter. To determine the length of time spent away from the Bering Sea, growth rate was estimated using the covarying oscillations δ¹³C and δ¹⁵N, estimated to be 0.09 mm/day. The δ¹³C and δ¹⁵N in vibrissae from 30 male …

Investigating The Effect Of Mechanical Beach Cleaning On Nesting, Hatching And Emergence Success Of Loggerhead (Caretta Caretta) And Green (Chelonia Mydas) Sea Turtles In Broward County, Florida, Megan A. Earney

HCNSO Student Theses and Dissertations

Sea turtles face many threats to their populations globally. Loggerhead sea turtles (Caretta caretta) and green sea turtles (Chelonia mydas) are listed by the International Union for the Conservation of Nature Red List as Endangered. In Florida, loggerhead and green sea turtles nest along the coastline during April-September. Mechanical beach cleaning is an aesthetic service performed daily on some beaches in Florida to clean the wrack line and/or the entire beach of debris. Alterations made to beaches by methods such as mechanical beach cleaning have the potential to impact sea turtle nesting, hatching, and emergence success. Generalized …

Microbial Community Richness Distinguishes Shark Species Microbiomes In South Florida, Rachael Cassandra Karns

HCNSO Student Theses and Dissertations

The microbiome (microbial community) of individuals is crucial when characterizing and understanding processes that are required for organism function and survival. Microbial organisms, which make up an individual’s microbiome, can be linked to disease or function of the host organism. In humans, individuals differ substantially in their microbiome compositions in various areas of the body. The cause of much of the composition diversity is yet unexplained, however, it is speculated that habitat, diet, and early exposure to microbes could be altering the microbiomes of individuals (Human Microbiome Project Consortium, 2012b, 2012a). To date, only one study has reported on microbiome …

Reconciling The Challenge Of Aphanic Species Within Marine Conservation, Kerri L. Bolow

HCNSO Student Capstones

Aphanic species are those within a taxonomic complex that may not be readily distinguishable from other sympatric species. The existence of these species is becoming apparent at an increasing rate through the use of technological tools like molecular genetic analyses. A lack of clarity on the definitions of terms used to describe similar species, how these species are identified, and how prevalent they are can confound identification, description, and management of these organisms. This review collects and defines the terms used to describe these hidden species and suggests the use of the term aphanic for situations where additional information (and …

Shark Bycatch In Commercial Fisheries: A Global Perspective, Stephanie M. Bettis

HCNSO Student Capstones

Many shark species have global distributions and are caught incidentally in different types of fisheries. Over the last two decades, shark populations have declined tremendously, with one of the leading causes of this decline bycatch in primarily teleost fisheries. Bycatch occurs throughout the world’s fisheries, but is not well documented in terms of species composition and numbers of each species captured. Information on shark bycatch is spread through the primary and grey literature, but has not been compiled in summary to date. The goal of my capstone is to present global shark bycatch data and provide a comparative review to …

Bacterial Communities Associated With Healthy And Diseased Acropora Cervicornis (Staghorn Coral) Using High-Throughput Sequencing, Charles Walton

HCNSO Student Theses and Dissertations

Coral diseases were first noted in the 1960s and 1970s and have had major impacts globally on coral reef community structures. In the Caribbean, a major outbreak of white band disease has been considered responsible for the drastic decline of Caribbean Acroporids since the 1970s. In addition to white band disease, another more recently described condition known as rapid tissue loss (RTL) has had major impacts on Acropora cervicornis populations, specifically offshore Broward County Southeast Florida. While these diseases have contributed to the population decline, determining their etiologies has been elusive.

Coral diseases have been characterized by shifts in their …

The Biannual Cycle And Reproductive Morphology Of The Yellow Stingray, Urobatis Jamaicensis (Cuvier, 1817), With A Comparative Analysis From Batoid Reproductive Literature, Daniel P. Fahy

HCNSO Student Theses and Dissertations

Abstract

The yellow stingray, Urobatis jamaicensis (Cuvier, 1816) is the most common elasmobranch encountered in the coastal waters of Southeast Florida. The objectives of the present research were to characterize the reproductive biology of a stable population distributed near the northern extent of the species range. Morphological analyses were conducted to determine the seasonal variation of macroscopic and microscopic development and structural organization of reproductive organs of male and female rays (excluding ovarian histology) during all stages of reproduction. This is the first study to document a seasonal biannual cycle for any elasmobranch, as well as, sexual synchrony with a …

Biogeophysical And Physiological Processes Drive Movement Patterns In A Marine Predator, Lucy A. Howey, Bradley M. Wetherbee, Emily R. Tolentino, Mahmood S. Shivji

Marine & Environmental Sciences Faculty Articles

Background

Blue sharks (Prionace glauca) are among the most abundant and widely distributed of oceanic elasmobranchs. Millions are taken annually in pelagic longline fisheries and comprise the highest component of auctioned fin weight in the international shark fin trade. Though studies of blue sharks outnumber those of other large pelagic sharks, the species’ complicated and sexually segregated life history still confound current understanding of Atlantic movement patterns. Lack of detailed information regarding movement and vertical behavior continues to limit management efforts that require such data for stock assessment and sustainable catch modeling. Therefore, this study aims to describe …

Southward Flow On The Western Flank Of The Florida Current, Alexander Soloviev, Amy Hirons, Christopher Maingot, Cayla Whitney Dean, Richard E. Dodge, Alexander E. Yankovsky, Jon Wood, Robert H. Weisberg, Mark E. Luther, Julian P. Mccreary

Marine & Environmental Sciences Faculty Articles

A suite of long-term in situ measurements in the Straits of Florida, including the ADCP bottom moorings at an 11-m isobath and 244-m isobath (Miami Terrace) and several ADCP ship transects, have revealed a remarkable feature of the ocean circulation - southward flow on the western, coastal flank of the Florida Current. We have observed three forms of the southward flow - a seasonally varying coastal countercurrent, an undercurrent jet attached to the Florida shelf, and an intermittent undercurrent on the Miami Terrace. According to a 13-year monthly climatology obtained from the near-shore mooring, the coastal countercurrent is a persistent …

Characterize The Condition Of Previously Known And Newly Identified Large Dense Acropora Cervicornis Patches In Southeast Florida, Brian K. Walker

Marine & Environmental Sciences Faculty Reports

Historically, Acropora spp. are the major reef building corals seen throughout the Caribbean and parts of the Western Atlantic that can grow relatively rapidly in dominant mono-specific stands. Their rapid growth and fragmentation allows them to out compete other benthic organisms and form the major framework for entire reef zones. They are the most abundant and important species for reef accretion. Their branching morphologies provide important habitat for many other reef species and no other Caribbean coral species fills these ecosystem functions. Acroporids were once the dominant reef builder in the Caribbean and provided the majority of live coral cover, …

The Ocean's Vital Skin: Toward An Integrated Understanding Of The Sea Surface Microlayer, Anja Engel, Hermann W. Bange, Michael Cunliffe, Susannah M. Burrows, Gernot Friedrichs, Luisa Galgani, Hartmut Herrmann, Norbert Hertkorn, Martin Johnson, Peter S. Liss, Patrick K. Quinn, Markus Schartau, Alexander Soloviev, Christian Stolle, Robert C. Upstill-Goddard, Manuela Van Pinxteren, Birthe Zäncker

Marine & Environmental Sciences Faculty Articles

Despite the huge extent of the ocean's surface, until now relatively little attention has been paid to the sea surface microlayer (SML) as the ultimate interface where heat, momentum and mass exchange between the ocean and the atmosphere takes place. Via the SML, large-scale environmental changes in the ocean such as warming, acidification, deoxygenation, and eutrophication potentially influence cloud formation, precipitation, and the global radiation balance. Due to the deep connectivity between biological, chemical, and physical processes, studies of the SML may reveal multiple sensitivities to global and regional changes. Understanding the processes at the ocean's surface, in particular involving …

Coral Larvae Are Poor Swimmers And Require Fine-Scale Reef Structure To Settle, Tom Hata, Joshua S. Madin, Vivian R. Cumbo, Mark W. Denny, Joana Figueiredo, Saki Harii, Christopher J. Thomas, Andrew H. Baird

Marine & Environmental Sciences Faculty Articles

Reef coral assemblages are highly dynamic and subject to repeated disturbances, which are predicted to increase in response to climate change. Consequently there is an urgent need to improve our understanding of the mechanisms underlying different recovery scenarios. Recent work has demonstrated that reef structural complexity can facilitate coral recovery, but the mechanism remains unclear. Similarly, experiments suggest that coral larvae can distinguish between the water from healthy and degraded reefs, however, whether or not they can use these cues to navigate to healthy reefs is an open question. Here, we use a meta-analytic approach to document that coral larval …

Variable Patterns In Spur And Groove Reef Morphology Explained By Physical Controls And Their Relevance For Platform-Top Sedimentology, Robert C. Gardiner Jr

HCNSO Student Theses and Dissertations

Spur and groove (SaG) morphology is a common ornamentation of reef-armored Holocene carbonate platform margins. Composed of margin-normal promontories constructed of coral framestone, termed “spurs”, interleaved with similarly orientated gullies, “grooves”, this morphology varies based on a host of physical controls. Primarily, the surrounding oceanographic conditions as well as the size and shape of the platform the SaG is encompassing, directly influence the development and organization of SaG. Since grooves act as conduits for carbonate sediment transport, this study seeks to examine the relationship between SaG organization dictated by platform size and shape and how that in turn influences platform-top …

Environmental Factors Affecting Loggerhead Sea Turtle (Caretta Caretta) Nesting, Hatching, And Incubation Patterns In Broward County, Florida, Zoey Ellen Best

HCNSO Student Theses and Dissertations

Reproductive success in loggerhead (Caretta caretta) sea turtles is strongly dependent on the effective placement and internal conditions of their nests. Embryos rely on optimal incubation conditions for proper development and growth, which determines how many hatchlings will emerge from the nest. The internal microclimate of each nest is delicately balanced and can be easily influenced by external environmental conditions. This study was designed to examine several environmental variables and determine their effects on sea turtle nesting numbers, hatching success, and incubation conditions in Broward County Florida. Over a span of 25 years (1991-2015), the Broward County Sea …