Oceanography and Atmospheric Sciences and Meteorology Commons^™

Scleractinian Coral Recruitment To Reefs Physically Damaged By Ship Groundings, E. T. Rubin, Alison L. Moulding, Jose V. Lopez, David S. Gilliam, V. N. Kosmynin, Richard E. Dodge

Marine & Environmental Sciences Faculty Articles

The southeast Florida reef system faces a number of stress factors, among which ship groundings are one of the most physically damaging. Portions of the Florida reef tract located near Port Everglades, Broward County, Florida, USA have been damaged by ship groundings. In 2004, physical damage of more than 30,000 m² was caused by the groundings of two large cargo ships, the MV Eastwind and MV Federal Pescadores. The present study was designed to measure differences of scleractinian coral recruitment patterns (recruit diversity and richness) and rates to these injured sites in comparison to undamaged reef sites. Coral …

Comparison Of Bacterial Diversity Within The Coral Reef Sponge, Axinella Corrugata, And The Encrusting Coral Erythropodium Caribaeorum, Jose V. Lopez, L. K. Ranzer, A. Ledger, B. Schoch, A. Duckworth, P. J. Mccarthy, R. G. Kerr

Marine & Environmental Sciences Faculty Articles

We compared the Caribbean reef sponge, Axinella corrugata, with the Caribbean reef coral, Erythropodium caribaeorum for differences in their resident microbial communities. This cursory survey of bacterial diversity applied 16S rRNA gene sequences. Over 100 culture-independent sequences were generated from five different Axinella 16S rRNA libraries, and compared with 69 cultured isolates. The cultureindependent 16S rDNA clones displayed a higher diversity of Proteobacteria, including “uncultured” or “unknown” representatives from the Deltaproteobacteria. Arcobacterium, and Cyanobacteria were also found. We have also confirmed that Axinella sponges appeared to host specific microbial symbionts, similar to the previously identified clones termed “OSO” …

11th International Coral Reef Symposium Proceedings, Bernhard Riegl (Editor), Richard E. Dodge (Editor)

ICRS Conference Proceedings

A defining theme of the 11^th International Coral Reef Symposium was that the news for coral reef ecosystems are far from encouraging. Climate change happens now much faster than in an ice-age transition, and coral reefs continue to suffer fever-high temperatures as well as sour ocean conditions. Corals may be falling behind, and there appears to be no special silver bullet remedy. Nevertheless, there are hopeful signs that we should not despair.

Reef ecosystems respond vigorously to protective measures and alleviation of stress. For concerned scientists, managers, conservationists, stakeholders, students, and citizens, there is a great role to play …

11th International Coral Reef Symposium Abstracts, Bernhard Riegl (Editor), Richard E. Dodge (Editor)

ICRS Conference Proceedings

No abstract provided.

An Analysis Of Dwarf And Pygmy Sperm Whale (Kogia Sp.) Stranding Data In The Southeast United States, Nicole M. O'Brien

HCNSO Student Theses and Dissertations

Pygmy sperm whales (Kogia breviceps) and dwarf sperm whales (Kogia sima) strand frequently in the southeastern United States (SEUS). To detect seasonal trends in Kogia sp. strandings across the SEUS, all 979 stranding events from 1977 through 2005 were segregated by month. A peak in strandings occurred in the late summer and early fall (July – October). The entire SEUS was divided into segments of similar coastline orientation, 1) North and South Carolina, 2) Georgia and the east coast of Florida, 3) Florida Keys, 4) west coast of Florida, 5) Florida panhandle, Alabama and Mississippi, 6) …

Interpreting The Spatial Distribution Of Bathypelagic Nekton Along The Mid-Atlantic Ridge, C. I. H. Anderson, J. Horne, Tracey Sutton

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The spatial distribution of organisms plays a key role in facilitating biological processes, such as trophic interactions, which govern ecosystem structure and function. Attempts to understand bathypelagic (1000-4000 m depth) ecosystem dynamics have been hampered by the coarse temporal-spatial resolution and static nature of most sampling strategies. This study combines a traditional approach, based on discrete net trawls sampling small volumes, with the continuous full water column coverage provided by fisheries acoustics to investigate the distribution of biomass along the Mid-Atlantic Ridge (MAR). The limited trawl samples have been interpreted as showing a positive relationship between the presence of the …

Southeast Florida Coral Reef Evaluation And Monitoring Project 2007 Year 5 Final Report, Jennifer Wheaton, Michael Callahan, Jeff Beal, Chantal Collier, Laura Herren, Jamie Monty, Joanna Walczak, David S. Gilliam, Vanessa I. P. Brinkhuis, Allison S. Brownlee, Daniel P. Fahy, Shaun M. Gill, Elizabeth Goergen, Jenna R. Lueg, Lindsey Habakuk Klink, M. A. Philips, Nicole R. Stephens, Adam T. St. Gelais, Brian K. Walker, Richard E. Dodge, Tim Mcintosh, Steven Blair, Kenneth Banks, Louis E. Fisher, David Stout, Joe Ligas, Janet Phipps

Marine & Environmental Sciences Faculty Reports

No abstract provided.

Limnological Assistance For The Lake Mead National Recreation Area In Meeting The Challenge Of The Water 2025 Initiative: Annual Report, Period Ending May 31, 2008, Margaret N. Rees

Limnological Studies

Hiring: Limnologist Dr. Wai Hing (David) Wong was hired and officially reported to work on 5/15/2008.

Project 1 and Project 2: Dr. Wong has commenced work on Projects 1 and 2.

Project 3: Dr. Wong has commenced work on Project 3. A comprehensive zebra/quagga mussel bibliography has been completed and published to the 100th Meridian Web site. Six interagency, multi-disciplinary quagga mussel meetings have been held. A quagga mussel substrate project has been initiated and, through the coordination efforts of this project, two other studies have been selected and refined to help determine the ecological impacts of quagga mussel infestation …

The State Of Coral Reef Ecosystems Of Southeast Florida, Chantal Collier, Rob Ruzicka, Kenneth Banks, Luiz Barbieri, Jeff Beal, David Bingham, James A. Bohnsack, Sandra Brooke, Nancy Craig, Richard E. Dodge (Editor), Louis E. Fisher, Nick Gadbois, David S. Gilliam, Lisa Gregg, Todd Kellison, Vladimir N. Kosmynin, Brian Lapointe, Erin Mcdevitt, Janet Phipps, Nikki Poulos, John Proni, Patrick Quinn, Bernhard Riegl, Richard E. Spieler, Joanna Walczak, Brian K. Walker, Denise Warrick

Marine & Environmental Sciences Faculty Reports

No abstract provided.

Spring 2008, Nsu Oceanographic Center

Currents

No abstract provided.

Mercury Transport And Bioaccumulation In The Alvarado Lagoon System, Veracruz State, Mexico, Edward O. Keith, Jane L. Guentzel

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The Alvarado Lagoon System (ALS) consists of shallow rivers and lagoons connected to the Gulf of Mexico (GOMEX) by a narrow channel. We collected samples of water and seafood in the wet (September 2005) and dry (March 2003 and 2005) seasons, and human hair and sediment in 2005. Total Hg in sediments ranged from 27.5 to 90.5 μg Hg/g dry weight, while fish and shellfish Hg levels ranged from 0.01 to 0.35 μg Hg/g wet weight. Total Hg in human hair ranged from 0.10 to 3.36 μg Hg/g (n = 47) and 58 % of the hair samples were above …

Who's Eating Whom? Identification And Quantification Of Deep-Pelagic Prey Fishes In The North Atlantic Ocean, A. Heger, Tracey Sutton

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Understanding the structure and functioning of marine ecosystems requires accurate knowledge of trophic interactions. Trophic ecology studies generally underestimate prey diversity due to the difficulties imposed by digestion. Further, this degradation leads to uncertainty in the quantification of prey biomass (i.e., energy flow between various ecosystem components). Trophic interactions in the deep sea are poorly known relative to coastal ecosystems due to an incomplete inventory of meso-and bathypelagic species composition. The CoML field project MAR-ECO has increased our knowledge of the faunal structure of the mid-North Atlantic. Deep-pelagic fish specimens from the 2004 MARECO expedition provided a basis for an …

Bathypelagic Fish Diversity In The Sargasso Sea, Northwestern Atlantic Ocean, Tracey Sutton, Peter Wiebe, Ann Bucklin, Laurence P. Madin

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Of the various marine habitats, one of the (if not the) most daunting to quantify is the under-sampled bathypelagic zone (> 1000 m depth), which at 60% of the ocean’s volume is the largest habitat on Earth. One project addressing this challenge is the Census of

Marine Zooplankton (CMarZ), whose goal is the assessment of biodiversity of animal plankton throughout the world’s oceans. The 2006 CMarZ cruise in the Western North Atlantic provided an unprecedented opportunity to sample bathypelagic micronekton using a large midwater trawl (10-m2 MOCNESS) outfitted with fine (0.335-mm) mesh netting. This netting allowed non-destructive sampling of the …

The Importance Of Stealth: Recent Findings With The Eye-In-The-Sea Deep-Sea Observatory, Edith A. Widder, E. H. Raymond, Tracey Sutton

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The Eye-in-the-Sea (EITS) observatory was designed to be acoustically quiet and to use far-red illumination to observe deep-sea animals unobtrusively. The EITS has clearly demonstrated the critical importance of stealth in research ocean observatories. Its use has revealed both animals and behaviors never seen before. Additionally recordings of animal activity under different lighting conditions and in the presence or absence of different sound-producing vehicles (ROVs and submersibles) have revealed to what extent tools for exploration bias observations. Recent recordings made during a 2007 NOAA Ocean Exploration mission to deep waters around the Bahamas provide excellent additional examples of the importance …

Real-Time Coral Stress Observations Before, During, And After Beach Nourishment Dredging Offshore Se Florida, L. Fisher, Kenneth Banks, David S. Gilliam, Richard E. Dodge, D. Stout, Bernardo Vargas-Ángel, Brian K. Walker

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Beach nourishment in Southeast Florida involves dredging sand source borrow areas located between offshore reefs. From May 2005 to February 2006 Broward County, FL. nourished 10.9 km of beach with 1.5 ×106 m3 of sand. As part of a program to monitor potential reef community impacts, a visual stress index was developed from laboratory experiments and histological analyses for three stony coral species (Montastrea cavernosa, Solenastrea bournoni, and Siderastrea siderea). Scoring involved healthy = 0; moderately stressed = 1 (polyp swelling, increased mucus); markedly stressed = 2 (coloration changes, increased mucus secretion, tissue thinning); and severely stressed = 3 (severe …

Patterns In Southeast Florida Coral Reef Community Composition, M. P. Sathe, David S. Gilliam, Richard E. Dodge, L. E. Fisher

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The Southeast (SE) Florida coral reef system is the northern extension of the Florida reef tract. This high latitude system lies offshore a heavily populated and urbanized coast and therefore is affected by numerous environmental and anthropogenic stressors. Using annual monitoring data collected in 2004, the southeast lorida reef community was analyzed to investigate patterns in community composition in various habitat types. Data was collected by SCUBA divers who conducted a 30m2 belt transect survey at 24 sample sites offshore Broward County (SE), Florida. Sites ranged in depth range from six to 18 meters. The 24 sites occurred on five …

Long-Term Monitoring Of A High-Latitude Coral Reef System Off Southeast Florida, Usa: A Partnership Between Academia And Resource Management, David S. Gilliam, Kenneth Banks, Michael Callahan, Chantal Collier, Richard E. Dodge, Louis E. Fisher, Jennifer Wheaton

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Significant coral reef community development exists along the eastern shelf of the United States from the Dry Tortugas through the Florida Keys (Monroe County) and Southeast (SE) Florida (Miami-Dade, Broward, Palm Beach, and Martin Counties). State and county resource managers have partnered with academia to monitor the health of the SE Florida reef system. Since 2000, more than 20 sites have been monitored annually offshore Broward County. Quantitative data includes stony coral species cover, colony size, density, and condition (bleaching, disease, etc.) and gorgonian and sponge density. The SE Florida Coral Reef Evaluation and Monitoring Project (SECREMP) was established in …

Winter 2008, Nsu Oceanographic Center

Currents

No abstract provided.

Additional Records Of Deep-Sea Fishes From Off Greater New England, Karsten E. Hartel, Christopher P. Kenaley, John K. Galbraith, Tracey Sutton

Marine & Environmental Sciences Faculty Articles

Recent review of deep-sea fishes captured deeper than 200m off greater New England, from the Scotian Shelf at 44°N to the southern New England Shelf at about 38°N, documented 591 species. Subsequent trawling activity and reviews of deep-sea taxa occurring in the area have revealed that an additional 40 species in habit the deep sea off New England. Thirty-two of these new records were captured in the course of 44 bottom trawls and 94 mid-water trawls over or in the proximity of Bear Seamount (39°55'N, 67°30'W). Five of the 40 species have been described as new to science, at least …

Diverse Bacterial Pks Sequences Derived From Okadaic Acid-Producing Dinoflagellates, Roberto Perez, Li Liu, Jose V. Lopez, Tianying An, Kathleen S. Rein

Marine & Environmental Sciences Faculty Articles

Okadaic acid (OA) and the related dinophysistoxins are isolated from dinoflagellates of the genus Prorocentrum and Dinophysis. Bacteria of the Roseobacter group have been associated with okadaic acid producing dinoflagellates and have been previously implicated in OA production. Analysis of 16S rRNA libraries reveals that Roseobacter are the most abundant bacteria associated with OA producing dinoflagellates of the genus Prorocentrum and are not found in association with non-toxic dinoflagellates. While some polyketide synthase (PKS) genes form a highly supported Prorocentrum clade, most appear to be bacterial, but unrelated to Roseobacter or Alpha-Proteobacterial PKSs or those derived from other Alveolates …

The State Of Coral Reef Ecosystems Of Southeast Florida, Chantal Collier, Rob Ruzicka, Ken Banks, Luiz Barbieri, Jeff Beal, David Bingham, James Bohnsack, Sandra Brooke, Nancy Craig, Richard E. Dodge, Lou Fisher, Nick Gadbois, David S. Gilliam, Lisa Gregg, Todd Kellison, Vladimir Kosmynin, Brian Lapointe, Erin Mcdevitt, Janet Phipps, Nikki Poulos, John Proni, Patrick Quinn, Bernhard Riegl, Richard E. Spieler, Joanna Walczak, Brian K. Walker, Denise Warrick

Marine & Environmental Sciences Faculty Reports

The northern extension of the Florida reef tract and a complex of limestone ridges run parallel to the subtropical Atlantic coastline of southeast Florida. Spanning 170 km from the northern border of Biscayne National Park (BNP) in Miami-Dade County to the St. Lucie Inlet in Martin County, the reefs and hardbottom areas in this region support a rich and diverse biological community (Figure 5.1). Nearshore reef habitats in southeast Florida include hardbottom areas, patch reefs and worm reefs (Phragmatopoma spp.) exhibiting abundant octocoral, macroalgae, stony coral and sponge assemblages. Offshore, coral reef associated biotic assemblages occur on linear Holocene Acropora …

The Colonial Zoanthid Palythoa Caribaeorum: Population Dynamics On Southeast Florida Reefs, Joanna C. Walczak

HCNSO Student Theses and Dissertations

The colonial zoanthid Palythoa caribaeorum (Cnidaria, Zoanthidea) (Duchassaing and Michelotti 1861) is a major benthic component of most Caribbean reefs and is an extremely aggressive spatial competitor (Suchanek and Green 1981). This study looks at annual visits to 16 permanent monitoring sites over 3 reef designations (Inshore Ridge Complex, Middle Reef, and Outer Reef) in Broward County, Florida from 2002-2006. The data obtained in this study fills an informational void regarding the role of zoanthids in the southeast Florida reef benthic community. The study was conducted in two parts. Part One used digital imagery analysis to quantify the spatial cover …

Rates Of Carbonate Dissolution In Permeable Sediments Estimated From Porewater Profiles: The Role Of Sea Grasses, David J. Burdige, Richard C. Zimmerman, Xinping Hu

OES Faculty Publications

In this study we estimate sediment carbonate dissolution rates for sandy sea grass sediments on the Bahamas Bank using an inverse pore-water advection/diffusion/reaction model constrained by field observations. This model accounts for sea grass O₂ input to these sediments, and also parameterizes pore-water advection through these permeable sediments as a nonlocal exchange process. The resulting rates of carbonate dissolution are positively correlated with sea grass density, and are comparable with previous rate estimates for Florida Bay sediments. In contrast, the advective uptake of O₂ by these sediments decreased with increasing sea grass density. This suggests that the competing …

Co2 Sensitivity Of Southern Ocean Phytoplankton, Philippe D. Tortell, Christopher D. Payne, Yingyu Li, Scarlett Trimborn, Bjorn Rost, Walker O. Smith, Christina Riesselman, Robert B. Dunbar, Peter Sedwick, Giacomo R. Ditullio

OES Faculty Publications

The Southern Ocean exerts a strong impact on marine biogeochemical cycles and global air-sea CO₂ fluxes. Over the coming century, large increases in surface ocean CO₂ levels, combined with increased upper water column temps. and stratification, are expected to diminish Southern Ocean CO₂ uptake. These effects could be significantly modulated by concomitant CO₂-dependent changes in the region's biol. carbon pump. Here we show that CO₂ concentrations affect the physiology, growth and species composition. of phytoplankton assemblages in the Ross Sea, Antarctica. Field results from in situ sampling and ship-board incubation experiments demonstrate that inorganic …

The Use Of Extractable Lipofuscin For Age Determination Of Crustaceans: Reply To Sheehy (2008), H. Rodger Harvey, David H. Secor, Se-Jong Ju

OES Faculty Publications

The heterogeneous mixture of metabolic by-products termed lipofuscin (LF) or age pigments has long been known to accumulate in post mitotic cells with increasing age. In crustaceans several approaches have been developed over the years to track LF accumulation and provide a proxy for chronological age. Histological approaches have been traditionally used for LF determination of crustaceans (e.g. Sheehy et al. 1994, Mar Biol 121:237-245), but over the last decade extraction approaches for neural tissues have been introduced (Ju et al. 1999, Mar Ecol Prog Ser 185:171-179) and tested (Ju et al. 2001, Mar Ecol Prog Ser 224:197-205; 2003, Fish …

Interactions Between Changing Pco2, N2 Fixation, And Fe Limitation In The Marine Unicellular Cyanobacterium Crocosphaera, Fei-Xue Fu, Margaret R. Mulholland, Nathan S. Garcia, Aaron Beck, Mark E. Warner, Sergio A. Sañudo, David A. Hutchins

OES Faculty Publications

We examined the physiological responses of steady-state iron (Fe)-replete and Fe-limited cultures of the biogeochemically critical marine unicellular diazotrophic cyanobacterium Crocosphaera at glacial (19 Pa; 190 ppm), current (39 Pa; 380 ppm), and projected year 2100 (76 Pa; 750 ppm) CO₂ levels. Rates of N₂ and CO₂ fixation and growth increased in step with increasing partial pressure of CO₂ (pCO₂), but only under Fe- replete conditions. N₂) and carbon fixation rates at 75 Pa CO₂ were 1.4-1.8-fold and 1.2-2.0-fold higher, respectively, relative to those at present day and glacial pCO_{2 …}

Food Limitation In Larval Fish: Ontogenetic Variation In Feeding Scope And Its Potential Effect On Survival, Alexander B. Bochdansky, Peter Grønkjær, Pierre Pepin, William C. Leggett

OES Faculty Publications

We used the radiated shanny Ulvaria subbifurcataas a model species to explore the relative gut fullness from hatch to metamorphosis of wild larvae, and compared these values with those of laboratory-reared larvae fed at maximum rates. Ingestion rates of most wild larvae were above starvation levels but below the maximum feeding levels of laboratory-reared larvae. Twenty-six percent of freshly-hatched wild larvae and 11% of large, pre-settlement wild larvae had insufficient food in their stomach to satisfy metabolic requirements. These results, taken on their own, are consistent with the much hypothesized increased foraging performance and survival of larger larvae relative …

Ship Ballast Tanks: How Microbes Travel The World, Fred C. Dobbs

OES Faculty Publications

As the international shipping fleet travels the oceans, it carries with it hidden cargoes of microbes. Fred C. Dobbs explores the hazards posed and what can be done to counteract them.

Behavior Of An Escolar Lepidocybium Flavobrunneum In The Windward Passage As Determined By Popup Satellite Archival Tagging, David Kerstetter, P. H. Rice, Derke Snodgrass, Eric Prince

Marine & Environmental Sciences Faculty Articles

In June 2003, fisheries research was conducted in the Windward Passage using a chartered commercial pelagic longline vessel (Rice and Snodgrass 2003). This paper describes the habitat use by an escolar in this location tagged with a pop-up satellite archival tag (PSAT) that remained attached to the fish for 14 d. Data recovered from the PSAT were used to directly document diel vertical migration and ambient temperature range for the first time in a mesopelagic teleost.

A Modelling Study Of Developmental Stage And Environmental Variability Effects On Copepod Foraging, Jerry D. Wiggert, Eileen E. Hofmann, Gustav-Adolf Paffenhöfer

CCPO Publications

We used a stochastic Lagrangian model to study how behaviour contributes to copepod grazing success. The model simulates distinct foraging behaviours of Clausocalanus furcatus, Paracalanus aculeatus, and Oithona plumifera. Three sets of simulations were performed to investigate the effects of (a) prey-size preference; (b) variation in prey-size spectra; and (c) turbulence intensity on these species’ grazing rates. The size preference simulations demonstrate that, compared with copepodites, mature females have cell ingestion rates that are an order of magnitude lower, while carbon uptake is reduced by 35%. A prey spectrum that is skewed towards cells ,<6 >μm promotes copepodite …