Oceanography and Atmospheric Sciences and Meteorology Commons^™

Climate-Driven Stock Shifts And Expansions In The U.S. Northeast Shelf: Identifying Challenges, Opportunities, And Barriers Through Fishermen And Manager Perspectives, Sophie A. Swetz

All Theses And Dissertations

Climate-driven warming in the U.S. Northeast Shelf (NES) has led to changes in the spatial distributions of many marine resources. Shifts and expansions of commercially important fish stocks pose major challenges to fishermen and fisheries managers in this region. American lobster (Homarus americanus) in the Gulf of Maine (GOM) is one of these impacted stocks and is projected to continue its shift towards more northern and offshore areas. Continued ocean warming could potentially reduce the GOM lobster stock by up to 60% over the next several decades. Given Maine’s reliance on its lobster fishery—which contributes over 80% of …

Coastal Sediment Response To The Diel Oxygen Cycle, Kara Gadeken

Graduate Theses and Dissertations (2019 - present)

Shallow coastal sediments are sites of intense respiration and organic matter breakdown. Macroinfauna bioturbate and bioirrigate sediments which supplies microbes with oxygen and newly deposited organic material from surface sediments, facilitating microbial remineralization of organic matter. These processes depend heavily on the concentration of dissolved oxygen in overlying water. Shallow water oxygen patterns often follow a diel cycle as dissolved oxygen decreases at night due to respiration and then increases during the day with photosynthesis, creating recurring suboxic conditions that are potentially stressful to organisms. Sediment oxygen flux is known to depend on ambient dissolved oxygen concentration, but behavioral responses …

Exploring The Effects Of Varied Land Use On Elemental Concentrations Within Streams, Logan Jennings

Biological and Agricultural Engineering Undergraduate Honors Theses

It is well documented that human activity influences the chemistry of surrounding waters. As such, it is possible that there is a link between land use within a watershed and the chemical composition of the stream. The objectives of this study are to determine if varied land use does affect the concentrations of macronutrients and trace elements present in the streams of Northwest Arkansas, and if so, to determine what extent urban and agricultural development are responsible for these changes. Water samples were collected across 19 streams in the Northwest Arkansas region between January and March of 2022. Water samples …

Exploring Indicator Displacement Assays For Phosphate Detection In Seawater, Francis Radics

Chemistry & Biochemistry Student Scholarship

Francis Radics ’22
Major: Biochemistry
Faculty Mentor: Dr. John Breen, Chemistry and Biochemistry

Indicator displacement assays are based on the optical signal modulation of a noncovalently bound indicator upon dissociation by an analyte species. Our work has focused on exploring the lower detection limits for luminescent displacement assays for inorganic phosphate in seawater using complex ions containing two di(2-picolyl)amine ligands (also called DPA or bis(2-pyridylmethyl)amine), each coordinating a zinc cation. Following the work of B.D. Smith and coworkers, we have prepared three ligands by covalently attaching two DPA moieties, 2,6-bis(chloromethyl) benzene, and 2,6-bis(chloromethyl)-4-methylphenol, and 1,2-phenylenedimethylamine, for assays with 6,7-dihydroxy-4-methanesulfonic acid …

Evaluating Alternative Ebullition Models For Predicting Peatland Methane Emission And Its Pathways Via Data–Model Fusion, Shuang Ma, Lifen Jiang, Rachel M. Wilson, Jeff P. Chanton, Scott Bridgham, Shuli Niu, Colleen M. Iversen, Avni Malhotra, Jiang Jiang, Xingjie Lu, Yuanyuan Huang, Jason Keller, Xiaofeng Xu, Daniel M. Ricciuto, Paul J. Hanson, Yiqi Luo

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Understanding the dynamics of peatland methane (CH4) emissions and quantifying sources of uncertainty in estimating peatland CH4 emissions are critical for mitigating climate change. The relative contributions of CH4 emission pathways through ebullition, plant-mediated transport, and diffusion, together with their different transport rates and vulnerability to oxidation, determine the quantity of CH4 to be oxidized before leaving the soil. Notwithstanding their importance, the relative contributions of the emission pathways are highly uncertain. In particular, the ebullition process is more uncertain and can lead to large uncertainties in modeled CH4 emissions. To improve model simulations of CH4 emission and its pathways, …

Population Genomic Dynamics Of Mesopelagic Lanternfishes Diaphus Dumerilii, Lepidophanes Guentheri, And Ceratoscopelus Warmingii (Family: Myctophidae) In The Gulf Of Mexico, Andrea Bernard, Kimberly A. Finnegan, Tracey Sutton, Ron Eytan, Max Weber, Mahmood Shivji

Marine & Environmental Sciences Faculty Articles

Assessing the impacts of the Deepwater Horizon oil spill (DWHOS) on deep-sea fish assemblages of the Gulf of Mexico (GOM) has been hindered by an absence of baseline (pre-spill) data concerning the population genetic dynamics of these fishes. The lanternfishes (Myctophidae) are a speciose, yet understudied, taxonomic group, that comprise a significant portion of the global deep-sea biomass, making them integral members of meso- and bathy-pelagic food webs. Herein, we used a genomic approach (double digest restriction site associated DNA sequencing) to investigate the temporal genetic dynamics of three species of lanternfishes within the northern GOM in the region of …

Baseline Health And Nutritional Parameters Of Wild Sand Tigers Carcharias Taurus Sampled In Delaware Bay, Lisa A. Hoopes, Tonya M. Clauss, Bradley M. Wetherbee, Dewayne A. Fox

Marine & Environmental Sciences Faculty Articles

Species-specific hematological reference values are essential for diagnosis and treatment of disease and maintaining overall health of animals. This information is lacking for many species of elasmobranchs maintained in zoos and aquaria, thus reducing the effectiveness of care for these animals. Descriptive statistics and reference intervals were calculated for hematocrit and complete blood cell counts, biochemistry and protein electrophoresis parameters, trace minerals, vitamins, heavy metals, reproductive hormones, and fatty acids in the blood of 153 wild Sand Tigers Carcharias taurus of both sexes and a range of sizes caught in Delaware Bay (Delaware, USA). Mean hematocrit, total white blood cell …

Water: The Gift And The Curse: A Climate Change Preparedness Study On An Increased Rainfall Scenarios In The Yunguilla Cloud Forest, Ecuador, Emilia Dick Fiora Del Fabro

Independent Study Project (ISP) Collection

The purpose of this project was to try and better understand the risks posed to the Yunguilla community in an increased rainfall climate change scenario. While climate modeling is not exact, many models do predict increased rain and storm intensity in this area (“Explainer…”, 2018). This project studies erosion risk, and the potential damage to crops through a series of experiments and mapping.

The first experiment used three hydration percentages 50, 75 and 100, to water two crop types, Fragaria and Caspium, and monitored plant health to see the water's effect. The hydraulic stress testing did not model an increased …

Assessing The Threat Of Coral Decline On Fish Diversity In Response To Temperature, Ryland Talmadge

Independent Study Project (ISP) Collection

Misali, a PECCA-protected island off the east coast of Pemba, Tanzania, is considered to be a marine biodiversity hotspot with a protected Non-Extractive Zone (NEZ) and remaining Extractive Zone (EZ). Upon protection, the island’s fringe reefs faced severe coral bleaching during the 1998 bleaching event, estimated to kill up to 70% of corals. Since the event, several others have occurred in addition to restructuring the management plan in 2006 to expand the region to 1000km. While the damage from the most recent coral bleaching event in 2020 has yet to be surveyed, this study investigates the current reef health in …

The Relationship Between Substrate Composition, Community Structure And Feeding Preferences Of Parrot Fishes (Scaridae) In Anmardub, Guna Yala Coastal Reefs, Caitlin Amman

Independent Study Project (ISP) Collection

Coral reefs are important marine ecosystems, as they support biodiversity and generate buffer zones, yet their abundance is incredibly limited globally. One of the main threats that coral reefs face is excessive macroalgal coverage, which limits sunlight from reaching corals, and thus, limits the energy that can reach them. Parrot fish (Scaridae) are keystone herbivores, as they consume macroalgae growing on corals, which aids in reef survivability. While there is previous research on the abundances, sizes, and feeding habits of Scaridae species in the Caribbean, there is no published research on how community structure and feeding preferences of parrot fishes …

Los Impactos Del Cambio Climático En Las Comunidades Aymaras En Putre, El Valle De Azapa Y Arica, Lindsey Kaufman

Independent Study Project (ISP) Collection

Research Question: How is climate change affecting Aymara communities in Putre, the valley of Azapa, and Putre?

Objectives: To understand the effects of climate on communities by 1) describing which environmental problems exist and their impact on agriculture and ranching, 2) understanding the patterns of migration away from the ancestral land, 3) exploring the connections to the social determinants of health that exist with these change, and 4) analyzing the significance of these changes in the agriculture for the communities’ traditions and connection to the land.

Background: Aymara communities have historically inhabited agricultural and ranching lands in …

Aquatic Diversity In A Changing Tropical Andean Glacierized Catchment: Macroinvertebrates Reveal Possible Important Consequences To The Chimborazo Region As Glaciers Recede And The Climate Continues To Change, Tanner Thomas

Independent Study Project (ISP) Collection

Tropical Andean glaciers are retreating rapidly, and their disappearance will have drastic consequences for the people and ecosystems that depend on them. While they have begun to receive the attention they deserve in scientific literature, much is still not known. Majority of these investigations have taken place on the Volcán Antisana, while other important glacierized systems, like the Volcán Chimborazo have received little attention. This investigation aimed to a) evaluate the possible effects of glacier loss and climate change on aquatic ecosystems by comparing glacial meltwater, non-glacial and mixed streams, and b) to evaluate the effects of pasture intensity on …

The Influence Of Particle Concentration And Bulk Characteristics On Polarized Oceanographic Lidar Measurements, Brian L. Collister, Richard C. Zimmerman, Charles I. Sukenik, William M. Balch, Victoria J. Hill

OES Faculty Publications

Oceanographic lidar measurements of the linear depolarization ratio, δ, contain information on the bulk characteristics of marine particles that could improve our ability to study ocean biogeochemistry. However, a scarcity of information on the polarized light-scattering properties of marine particles and the lack of a framework for separating single and multiple scattering effects on δ have hindered the development of polarization-based retrievals of bulk particle properties. To address these knowledge gaps, we made single scattering measurements of δ for several compositionally and morphologically distinct marine particle assemblages. We then used a bio-optical model to explore the influence of multiple …

Comparative Toxicity Of Hydrocarbons For Evaluation Of Lysmata Boggessi As An Experimental Proxy For Deep-Water Column Micronekton, Dorothy-Ellen A. Renegar, Nicholas Turner, Gopal Bera, Eileen G. Whitemiller, Bernhard Riegl, Jose Sericano, Anthony H. Knap

Marine & Environmental Sciences Faculty Articles

The potential impacts of sub-surface hydrocarbon plumes to deep-water column micronekton are an important consideration in a more complete understanding of ecosystem effects resulting from deep-sea oil spills. However, evaluating toxicity in these organisms presents multiple challenges, and the use of a shallow-water proxy species allows comparison and validation of experimental results. This study thus examined the suitability of the peppermint shrimp, Lysmata boggessi, as an experimental proxy for ecologically important deep-sea zooplankton/micronekton in hydrocarbon toxicity assays. This crustacean species occurs in shallow coastal marine environments throughout the western Atlantic, Caribbean and Gulf of Mexico, is similar in …

Comparison Of Recent Survey Techniques For Estimating Benthic Cover On Caribbean Mesophotic Reefs, Joseph R. Pawlik, Roy A. Armstrong, Stephanie Farrington, John Reed, Sara Rivero-Calle, Hanumant Singh, Brian K. Walker, Jason White

Marine & Environmental Sciences Faculty Articles

Highly divergent estimates of benthic cover of sponges have been reported for Caribbean mesophotic reefs (90-100 m) based on quadrat point-intercept data collection using 2 methods: visual surveys conducted in situ by technical divers, and analyses of photographs taken by unmanned underwater vehicles (UUVs). The second method has been criticized for potential errors from image distortion caused by variable camera angle relative to the substratum, but without a broader comparison of both methods. We find that studies that have used the UUV-based method are advantageous for a number of reasons, most importantly: (1) access to the full mesophotic zone, (2) …

Commodity Prices, Climate And The High Plains Aquifer, Richard K. Perrin, Lilyan E. Fulginiti, Felipe Silva, Karina A. Schoengold

Cornhusker Economics

Crop prices and energy prices can affect the water level in an aquifer? Absolutely, yes, because over time, they affect the amount withdrawn for irrigation. Our recent research confirms that effect and provides estimates of the size of the effect on the High Plains Aquifer (HPA). The HPA underlies parts of eight states and 208 counties in the west-central United States (see Figure 1). This region produces more than 9% of US crop sales and relies on the aquifer for irrigation. These withdrawals for irrigation have contributed to a diminished stock of water in the aquifer that varies considerably across …

Analysis Of The Magnetic Signature Of Surface Waves Measured In A Laboratory Experiment, John Kluge, Alex Soloviev, Cayla W. Dean, Geoffrey K. Morrison, Brian K. Haus

Marine & Environmental Sciences Faculty Articles

A magnetic signature is created by secondary magnetic field fluctuations caused by the phenomenon of seawater moving in Earth’s magnetic field. A laboratory experiment was conducted at the SUrge STructure Atmosphere INteraction (SUSTAIN) facility to measure the magnetic signature of surface waves using a differential method: a pair of magnetometers, separated horizontally by one-half wavelength, were placed at several locations on the outer tank walls. This technique significantly reduced the extraneous magnetic distortions that were detected simultaneously by both sensors and additionally doubled the magnetic signal of surface waves. Accelerometer measurements and local gradients were used to identify magnetic noise …

Empirically Derived Thermal Thresholds Of Four Coral Species Along The Red Sea Using A Portable And Standardized Experimental Approach, Nicolas R. Evensen, Christian R. Voolstra, Maoz Fine, Gabriela Perna, Carol Buitrago-López, Anny Cárdenas, Guilhem Banc-Prandi, Katherine Rowe, Daniel J. Barshis

Biological Sciences Faculty Publications

Global warming is causing an unprecedented loss of species and habitats worldwide. This is particularly apparent for tropical coral reefs, with an increasing number of reefs experiencing mass bleaching and mortality on an annual basis. As such, there is a growing need for a standardized experimental approach to rapidly assess the thermal limits of corals and predict the survival of coral species across reefs and regions. Using a portable experimental system, the Coral Bleaching Automated Stress System (CBASS), we conducted standardized 18 h acute thermal stress assays to quantitively determine the upper thermal limits of four coral species across the …

A Non-Iteration Solution For Solving The Backward-In-Time Two-Dimensional Burgers’ Equation With A Large Reynolds Number, Yen-Shen Chang, Yung-Wei Chen, Chein-Shan Liu, Jiang-Ren Chang

Journal of Marine Science and Technology–Taiwan

This article proposes a noniteration solution based on the Lie-group shooting method (LGSM) to solve the backward-in-time two-dimensional Burgers’ equation with a large Reynolds number. The backward problem is famous for seriously ill-posed cases because the solution is generally unstable and highly dependent on the input data. Small perturbations in the input data, such as random errors inherent to the measurements in the analysis, can cause large oscillations in the solution. To handle a large Reynolds number under long time spans, it is very difficult to integrate towards the time direction. To avoid time integration and numerical iteration, the noniteration …

Polyketides And Terpenes In Marine Microalgae: Ecological Roles And Mechanisms Of Biosynthesis, Yunxuan Xie, Mohammad Elsheikh

Journal of Marine Science and Technology–Taiwan

Marine microalgae comprise a large number of polyketides and terpenes identified to date with highly diverse molecular scaffolds and the biological activities (Kalaitzis et al., 2010). These compounds play significant roles in marine food web and nutraceutical supplementation in marine animals. Compounds of this class are often synthesized by gene clusters with dedicated domains responsible for carbon chain extension and modification. The unique molecular structure of these compounds encourages people to investigate their biosynthetic mechanisms in-depth. In this review, we summarize relevant articles to unravel the shared mechanisms of these compounds to further understand the variety of domain organizations and …

Unbaited Light-Emitting Diode Traps Performance For Catching Orange Mud Crabs, Muhamad Naimullah, Kuo-Wei Lan, Mhd Ikhwanuddin, Adnan Amin-Safwan, Wei-Yu Lee

Journal of Marine Science and Technology–Taiwan

Mud crabs (Scylla spp.) are a vital fishery resource and targeted for a valuable source of income for coastal communities throughout the Indo-Pacific region. Baited traps are a considerable expense in crustacean fishing. Hence, the present study was performed to investigate the catchability of Scylla olivacea in response to light-emitting diodes (LEDs) in captivity and field conditions. We used a new experimental setup in the captivity condition that revealed most S. olivacea were attracted to green, blue, and white LED lights and no attractive effect by red LED lights similar to the controls. Field studies have shown that the catch …

Catch And Effort Standardization For Taiwanese Swordtip Squid Uroteuthis Edulis Fisheries In The Southern East China Sea, Ke-Yang Chang, Yu-Jie Hsu, Tzu-Yun Ching, Cheng-Hsin Liao, Chih-Shin Chen

Journal of Marine Science and Technology–Taiwan

The swordtip squid Uroteuthis edulis is a neritic squid species that is widely distributed within the coastal waters of subtropical and tropical Indo-western Pacific regions. This squid is a commercially important species throughout its distribution range and plays a critical role in marine ecosystems. Stock assessments of the squid in the East China Sea (ECS) are scarce, although it is crucial information for the sustainability of the squid and relevant fisheries. The squid was harvested by various fisheries in the southern ECS, which could restrict methods for catch-effort standardization. In this study, catch-effort data of Taiwanese swordtip squid fisheries in …

Uniform Torsion Analysis Of Composite Shafts Using Point Collocation Method Based On Pascal Polynomials, Chih-Wen Chang, Jyh-Hong Wu, Ying-Ru Lin, Yu-Feng Lin, Nan-Nong Huang

Journal of Marine Science and Technology–Taiwan

Torsion bars are important elements in the marine structure applications. The usage of the composite torsion bars has increased recently because it takes advantage of the different material property of each constituent. The current research focuses mainly on the uniform warping analysis of composite torsion shafts by using the point collocation method (PCM). The PCM is based on Pascal's triangle polynomial expansion and coupled with subdomain technique that is indispensable for the analysis of composite bars. In addition to satisfying the field equation (Laplace equation for warping function) and traction-free boundary condition for each component, the continuity conditions in both …

Local Reinforcement Design And Safety Factor Evaluation Of Elliptical Hatch Of Pressure Hull, Guang-Min Luo, Jun-Wei Chen

Journal of Marine Science and Technology–Taiwan

A pressure hull is the primary pressure-resistant structure of a submarine. To safeguard the compressive strength of such a hull, local structural reinforcement is required for various hatches on the hull. Hatches are commonly reinforced through increasing the thickness of the hull regions around them; alternatively, hatch nozzle walls are connected with stiffened frames to maintain the continuity of reinforced structures. This study focused on a pressure hull with an elliptical hatch. A PD-5500 cylindrical pressure hull was used to design a cylindrical pressure hull structure, and a model of hatch nozzle reinforcement was designed using the Boiler and Pressure …

Effects Of Dietary Lipid, L-Carnitine And L-Lysine Supplementation On The Growth Performance And Body Composition Of Epinephelus Lanceolatus Larvae, Jen-Hong Chu, Yu-Cong Hong, Angela Chien, Shyn-Shin Sheen

Journal of Marine Science and Technology–Taiwan

The effects of different combinations of dietary lipid, L-carnitine and L-lysine on the growth performance and fatty acid profiles of larval grouper Epinephalus lanceolatus were evaluated. Eight treatment diets were formulated based on a 2x2x2 factorial design, namely 5 and 14% dietary oil mixture (3:1 fish oil/soybean oil), 0 and 0.5% L-carnitine and 0 and 2.83% L-lysine. Each diet was randomly assigned to triplicate groups of ten 0.08g E. lanceolatus larvae for 42 days. The grouper larvae fed with diets containing 14% lipid had significantly higher weight gain percentages than those fed with diets containing 5% lipid. The weight gain …

Quantitative Assessment Of The Trophic Ecology Of The Oceanic Ctenophore, Bolinopsis Infundibulum, In Monterey Bay, California, Victoria C. Scriven

USF Tampa Graduate Theses and Dissertations

Bolinopsis infundibulum is a wide-ranging, ubiquitous ctenophore whose fragile nature makes the collection of specimens and quantification of key predator-prey activities in controlled laboratory experiments, challenging. Thus, in situ methods often represent the best means for data collection. However, while present in surface waters, these animals can also be abundant at depths well beyond those attainable by divers. As a result, very little empirical data exist over the depth range of their natural habitats which limits our ability to assess key predator-prey interactions needed to assess their ecological role in midwater food webs. Working in Monterey Bay, California, remotely operated …

Connecticut Embayment Characteristics 2022, Jamie M.P. Vaudrey, James E. O'Donnell

Department of Marine Sciences

Data on Connecticut embayment characteristics. This Excel file is the centerpiece for capturing embayment characteristics as presented in RESPEC (2022), developed specifically for this project. Some parameters such as watershed size, embayment size, and tidal range were pulled from other sources described in Appendix A of RESPEC (2022), but much of the data and indicators in the Excel file were developed for this project. Each parameter included in the spreadsheet is fully defined in Appendix A of RESPEC (2022). All data available in the spreadsheet are provided by embayment in Appendix C of RESPEC (2022), including the results of bathymetric …

Spatial And Temporal Patterns Of Fire On Saipan, Cnmi, Ilan E. Bubb, Zachary B. Williams

Marine & Environmental Sciences Faculty Articles

Sediment core studies from Saipan suggest that fires did not play a prominent role in the disturbance regime of the Mariana Islands and have increased in frequency since human settlement around 4,000 years ago. On Saipan fires are understood to interrupt the pattern of succession leading to the degradation of native limestone forests, the proliferation of grasslands and the eventual creation of badlands. Little baseline data regarding the spatial and temporal patterns of fire on Saipan exist to create effective Fire Management Plans. This project uses Landsat 8 images from April 2013 to July 2020 and the Normalized Burn Ratio …

Peak Chlorophyll A Concentrations In The Lower Mississippi River From 1997 To 2018, R. Eugene Turner, Charles S. Milan, Erick M. Swenson, James M. Lee

Faculty Publications

Large and turbid rivers have varying temperatures, light conditions, nutrient availability, and nutrient ratios that may affect phytoplankton communities and occur within a changing world of point and nonpoint source nutrient loadings. We investigated how these physical and chemical factors affect Chlorophyll a (Chl a) concentrations in the Mississippi River, the largest river in North America, by sampling 878 times from February 1997 to December 2018 near its terminus at Baton Rouge, Louisiana. We hypothesized that nutrient concentrations and ratios were significant factors limiting phytoplankton biomass accumulations in this turbid river. The Chl a concentrations were in the "poor" water …

Precipitation Is A Strong Predictor Of Airborne Ammonia Levels., Bridger Jorgensen, Casey Olson, Connor Snow

Research on Capitol Hill

USU senior Connor has lived in the Uintah Basin all his life and studies kinesiology. Senior Casey, a Cache Valley native, studies climate science and works at the Utah Climate Center. Junior Bridger, also of Cache Valley, studies nutrition science. They led and funded this project through a student grant. Casey was alarmed by the ammonia data he was collecting at the Climate Center. “I immediately began to wonder how this issue would evolve over the coming decades.” The three teamed up to take a look at how Logan’s record-breaking amount of ammonia in our air is impacting those who …