Oceanography and Atmospheric Sciences and Meteorology Commons^™

On The Movement Of Beluga Whales In Cook Inlet, Alaska: Simulations Of Tidal And Environmental Impacts Using A Hydrodynamic Inundation Model, Tal Ezer, Roderick Hobbs, Lie-Yauw Oey

CCPO Publications

The population of beluga whales in Cook Inlet, Alaska, is in decline, and since 2000 these whales have been under consideration for designation as "endangered" under the Endangered Species Act (and were placed on the list in October 2008, just before this article went to press). In order to study environmental and hydrodynamic impacts on the belugas' movements and survival in the unique habitat of the inlet, a three-dimensional ocean circulation and inundation model is combined with satellite-tracked beluga whale data. Model-wale data comparisons from two whale paths during a five-day period (september 17-21, 2000) covering 10 tidal cycles suggest …

Nutrient Loading And Eutrophication In The Great Salt Lake, Wayne A. Wurtsbaugh

Watershed Sciences Faculty Publications

No abstract provided.

North Shore Bays Benthic Mapping: Groundtruth Studies., Robert M. Cerrato, Lee Holt

School of Marine & Atmospheric Sciences Faculty Publications

We combined high-resolution remote sensing techniques with detailed study of the physical and faunal characteristics at point locations in different seafloor environments within the Oyster Bay- Cold Spring Harbor Complex, the Huntington-Northport Bay Complex, and Port Jefferson Harbor, including Conscience Bay. High-resolution backscatter and bathymetric maps created by side scan and multibeam sonar surveys were used to classify the sea bed into provinces. Samples for macrofauna and sediment properties were collected within each province to provide "ground truth" for the acoustic maps. Oyster Bay, Huntington Harbor, and Port Jefferson Harbor were sampled at 40, 38, and 50 locations, respectively, with …

North Shore Bays Benthic Mapping: Groundtruth Studies Gis Data, Robert M. Cerrato, Lee Holt

SoMAS Research Data

We combined high-resolution remote sensing techniques with detailed study of the physical and faunal characteristics at point locations in different seafloor environments within the Oyster Bay- Cold Spring Harbor Complex, the Huntington-Northport Bay Complex, and Port Jefferson Harbor, including Conscience Bay. High-resolution backscatter and bathymetric maps created by side scan and multibeam sonar surveys were used to classify the seabed into provinces. Samples for macrofauna and sediment properties were collected within each province to provide "ground truth" for the acoustic maps. Oyster Bay, Huntington Harbor, and Port Jefferson Harbor were sampled at 40, 38, and 50 locations, respectively, with two …

Live Release Of A Bigeye Sand Tiger Odontaspis Noronhai (Elasmobranchii: Lamniformes) In The Western North Atlantic Ocean, David W. Kerstetter, Mae Taylor

Marine & Environmental Sciences Faculty Articles

No abstract provided.

Seasonal Changes In A Eutrophic Lake, Wilgreen Lake, Madison County, Kentucky, Richard D. Stockwell, Walter S. Borowski

EKU Faculty and Staff Scholarship

WilgreenLake (Madison County, Kentucky) covers ~169 acres, formed in 1966 by damming Taylor Fork. The Wilgreen watershed drains residential developments, modified woodlands, cattle pasture, and some industrial/urban areas in the city of Richmond. The lake is deemed “nutrient impaired” by the EPA.

Our main objective is to document the seasonal changes in key lake parameters from summer stratification through fall overturn over 4 months of sampling, August through November, 2008. We collect temperature, oxygen, pH, and conductivity data from 19 stations at depth intervals of 1 meter using an YSI multi-probe. Concurrent with collecting these framework data, we take water …

Coral Reef Restoration And Mitigation In Florida And Beyond, Jocelyn Karazsia, Tom Moore, James Byrne, David S. Gilliam, John Hunt

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

No abstract provided.

Consequences Of More Extreme Precipitation Regimes For Terrestrial Ecosystems, S. D. Smith, C. Beier, Aimee T. Classen, Melinda D. Smith, Jana L. Heisler, S. W. Leavitt, Alan K. Knapp, D. Briske, Y. Luo, M. Reichstein, J. E. Bell, Philip A. Fay, R. Sherry, Benjamin Smith

Life Sciences Faculty Research

Amplification of the hydrological cycle as a consequence of global warming is forecast to lead to more extreme intra-annual precipitation regimes characterized by larger rainfall events and longer intervals between events. We present a conceptual framework, based on past investigations and ecological theory, for predicting the consequences of this underappreciated aspect of climate change. We consider a broad range of terrestrial ecosystems that vary in their overall water balance. More extreme rainfall regimes are expected to increase the duration and severity of soil water stress in mesic ecosystems as intervals between rainfall events increase. In contrast, xeric ecosystems may exhibit …

Fall 2008, Nsu Oceanographic Center

Currents

No abstract provided.

Spatial Analyses And Repletion Of Gargathy Coastal Lagoon, Loreto Herraiz Gomez

OES Theses and Dissertations

Coastal lagoons and bays vary in shape and size in response to antecedent topography, geologic processes and sea level rise. Variations in shape and environmental conditions of coastal basins are believed to influence the distribution of benthic sub-environments and the exchange of water with the ocean and other adjacent coastal systems. Gargathy Inlet and its coastal lagoon vary spatially from the inlet, where the greatest depths are observed, to the mainland, dominated by shallow intertidal areas, colonized by marsh. Hypsographic and hydro-hypsographic analyses of Gargathy's coastal lagoon were the primary techniques applied to understand the relative distribution of the benthic …

Using Moored Arrays And Hyperspectral Aerial Imagery To Develop Nutrient Criteria For New Hampshire's Estuaries, J. Ru Morrison, Thomas K. Gregory, Shachak Pe'eri, William H. Mcdowell, Philip Trowbridge

PREP Reports & Publications

Increasing nitrogen concentrations and declining eelgrass beds in Great Bay, NH are clear indicators of impending problems for the state’s estuaries. A workgroup established in 2005 by the NH Department of Environmental Services and the NH Estuaries Project (NHEP) adopted eelgrass survival as the water quality target for nutrient criteria development for NH’s estuaries. In 2007, the NHEP received a grant from the U.S. Environmental Protection Agency to collect water quality information including that from moored sensors and hyper-spectral imagery data of the Great Bay Estuary. Data from the Great Bay Coastal Buoy, part of the regional Integrated Ocean Observing …

Limnological Assistance For The Lake Mead National Recreation Area In Meeting The Challenge Of The Water 2025 Initiative: Quarterly Report, Period Ending September 30, 2008, Margaret N. Rees

Limnological Studies

Project 1: Technical input has been provided at eight advisory team meetings attended this quarter. Broad, overarching “Issues of Concern” developed for the Boulder Basin Adaptive Management Plan are currently under review by Drs. David Wong and Shawn Gerstenberger. A Selenium Management Plan is also under review.

Project 2: Data collected by the Southern Nevada Water Authority has been synthesized to summarize bacteria counts in high-use areas of Lakes Mead and Mohave. This information will be documented and interpreted for management use in a formal report in the upcoming quarter.

Project 3: A draft document titled “Suggested Standard Methods for …

Critical Review Of The Literature On Marine Mammal Population Modelling, Edward O. Keith

Marine & Environmental Sciences Faculty Reports

A comprehensive literature review and modeling effort have been conducted in order to determine which vital rates are most important to determining the growth and sustainability of marine mammal populations. Also addressed are the impacts of life-history, ecological, and genetic variation on vital rates and population sustainability and how much each vital parameter can change before a change in population trend would be expected. Additionally, the influence of ecological energetics and foraging strategies on vital rates and their limits of sustainable change are examined, and the nature of how an increase in sound in the marine environment might influence marine …

Mapping Coral Reef Habitats In Southeast Florida Using A Combined Technique Approach, Brian K. Walker, Bernhard Riegl, Richard E. Dodge

Marine & Environmental Sciences Faculty Articles

To create maps of nearshore benthic habitats of Broward County, Florida, from 0 to 35 m depth, we combined laser bathymetry, acoustic ground discrimination, subbottom profiling, and aerial photography data in a geographic information system (GIS). A mosaic of interpolated, sun-shaded, laser bathymetry data served as the foundation upon which acoustic ground discrimination, limited subbottom profiling and aerial photography, and groundtruthing data aided in interpretation of habitats. Mapping criteria similar to NOAA biogeographic Caribbean mapping were used to allow for a comparable output. Expert-driven visual interpretation outlined geomorphological features at a scale of 1 : 6000 with a minimum mapping …

Dispersal Limitation And Climate-Related Environmental Gradients Structure Microcrustacean Composition In Freshwater Lakes, Ellesmere Island, Canada, Angela L. Strecker, Rebecca Milne, Shelley E. Arnott

Environmental Science and Management Faculty Publications and Presentations

Dramatic environmental change is expected in the Arctic, yet little is known about the occurrence and community composition of microcrustaceans in Arctic lakes and how this will be influenced by future environmental change. We sampled and calculated relative abundances of microcrustacean species in 54 lakes on Ellesmere Island, Canada. New species records on Ellesmere Island included Daphnia umbra, Tachidius discipes, and Artemeopsis stefanssoni. Daphnia middendorffiana/tenebrosa was the most common taxon and often dominated microcrustacean assemblages, likely a result of its pigmentation, which offers resistance to ultraviolet radiation. Species richness was positively associated with nutrients, dissolved organic carbon (DOC), temperature, calcium, …

Assessment Of Coliform Bacteria From Point And Nonpoint Sources In The Las Vegas Wash, Susan O'Neill, Kumud Acharya

Undergraduate Research Opportunities Program (UROP)

This project focuses on an assessment of coliform bacteria from point and non point sources in Las Vegas Wash. Correlations between land use related runoffs, nutrients and organic matter loading and total coliform will be studied. Data will be collected for both daily low and high flow events. Sampling locations will cover all major land use types such as golf course, hotels, hospitals, residential areas, etc., at both the main Wash and its tributaries.

Summer 2008, Nsu Oceanographic Center

Currents

No abstract provided.

Spatial And Temporal Patterns In The Microbial Diversity Of A Meromictic Soda Lake In Washington State, Pedro A. Dimitriu, Holly C. Pinkart, Brent M. Peyton, Melanie R. Mormile

All Faculty Scholarship for the College of the Sciences

The microbial community diversity and composition of meromictic Soap Lake were studied using culture-dependent and culture-independent approaches. The water column and sediments were sampled monthly for a year. Denaturing gradient gel electrophoresis of bacterial and archaeal 16S rRNA genes showed an increase in diversity with depth for both groups. Late-summer samples harbored the highest prokaryotic diversity, and the bacteria exhibited less seasonal variability than the archaea. Most-probable-number assays targeting anaerobic microbial guilds were performed to compare summer and fall samples. In both seasons, the anoxic samples appeared to be dominated by lactate-oxidizing sulfate-reducing prokaryotes. High numbers of lactate- and acetate-oxidizing …

Deep-Pelagic Fishes And The Mid-Atlantic Ridge: Interactions And Vectoring Of Gelatinous Carbon To Higher Trophic Levels?, Tracey Sutton, F. M. Porteiro, C. I. H. Anderson, J. Horne

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The assemblage structure and vertical distribution of deep-pelagic fishes relative to a mid-ocean ridge system is described from an acoustic and discrete-depth trawling survey conducted as part of the international Census of Marine Life field project MAR-ECO. A survey along the Mid-Atlantic Ridge (MAR), covering the full depth range (0 to >3000 m) with a combination of gear types, was conducted to understand the role of the pelagic fauna in ecosystem dynamics. A total of 205 fish species were collected by midwater sampling. Depth was by far the primary assemblage composition determinant, with ridge section secondary. The dominant ichthyofaunal component …

A Comparison Of Scleractinian Coral Abundance Between Natural And Artificial Substrata In A High-Latitude Environment Off Broward County, Florida, Usa, Deron James Bauer

HCNSO Student Theses and Dissertations

The Dania Beach Erojacks Artificial Reef was deployed off the coast of Broward County, Florida on December 31, 1967 as a way to help combat beach erosion. Over the last forty years, the linear pile of concrete hexapods has become an important habitat, for scleractinian corals, octocorals, algae, crustaceans, mollusks, and fish. This study focuses on the density and size of the scleractinian corals found on this artificial reef and how it compares to that of the nearby natural reef. In addition, the impact of two hurricanes on the shallow portion of the artificial reef was documented. In the 2-year …

A Model Framework For Predicting Reef Fish Distributions Across The Seascape Using Gis Topographic Metrics And Benthic Habitat Associations, Brian K. Walker

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Increased topographic complexity has been linked to increased species diversity and/or abundance in many ecological communities, including coral reefs. Several topographic metrics can be measured remotely in GIS using high resolution bathymetry, including elevation, surface rugosity, and seafloor volume within specified areas. Statistical relationships between these data and organismal distributions within mapped habitats can be used to make predictions across the entire bathymetric dataset. In this study a model framework is presented which utilizes statistically significant relationships between reef fish abundance and species richness and GIS topographic complexity measurements for samples within similar benthic habitats to create GIS-based prediction maps …

Genetic Connectivity In The Branching Vase Sponge (Callyspongia Vaginalis) Across The Florida Reef Tract And Caribbean, Melissa B. Debiasse, Vincent P. Richards, Mahmood S. Shivji

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The Porifera constitute a substantial fraction of the biomass on coral reefs and frequently have higher species diversity than corals and algae, making this phylum an important model for the investigation of reef connectivity. We examined genetic connectivity in the common branching vase sponge, Callyspongia vaginalis, by analyzing DNA sequence variation in 511 bp of the mitochondrial cytochrome oxidase I (COI) gene in 401 individuals sampled from 16 locations throughout the Florida reef tract and Caribbean. Populations of Callyspongia vaginalis were highly genetically structured over the study area (ΦST = 0.48, P < 0.0001), including over distances as short as tens of kilometers within the Florida reef tract, and had a significant overall pattern of isolation by distance (P = 0.0002). However, nonsignificant pairwise ΦST values were also found between a few Florida sampling sites suggesting that long distance dispersal, perhaps by means of fragmentation, may occur over continuous, shallow coastlines. Indeed, sufficient gene flow appears to occur along the Florida reef tract to obscure a signal of isolation by distance (P = 0.164), but not to homogenize haplotype frequencies over 465 km from Palm Beach to the Dry Tortugas. Statistical parsimony analysis revealed two highly divergent haplotypes from Honduras suggestive of cryptic speciation. Inferences from a nested clade analysis supported the pattern of restricted gene flow and isolation by distance in the Caribbean, and suggested a northward range extension of C. vaginalis from a hypothesized Central American …

Contrasting Patterns Of Population Structure And Dispersal For The Giant Barrel Sponge (Xestospongia Muta) Within The Florida Reef Tract And Caribbean, Vincent P. Richards, Kevin A. Feldheim, Mahmood S. Shivji

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Sponges are one of the dominant fauna on Florida and Caribbean reefs, with species diversity often exceeding that of scleractinian corals. Despite their importance as structural components and habitat providers on reefs, their dispersal dynamics are little understood. We utilized eight microsatellite markers to study the population structure and migration patterns of the giant barrel sponge (Xestospongia muta), a widespread species throughout Florida and the Caribbean. Bayesian multilocus genotype analyses clustered 157 samples from the Bahamas, Honduras, and the US Virgin Islands into three distinct groups. 159 samples from nine locations within 284 km of the Florida reef …

Coral Ultrastructural Response To Elevated Pco2 And Nutrients During Tissue Repair And Regeneration, Dorothy-Ellen A. Renegar, Patricia Blackwelder, Alison L. Moulding

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Corals and coral reefs have recently experienced widespread decline attributed to anthropogenic pressure on reef systems. Studies have demonstrated that nutrient and pCO₂ stress effect coral growth and calcification, but study of specific effects on coral tissue is lacking. The objective of this research was to examine wound healing in corals and how it is affected by exposure to elevated nutrients and pCO₂. Coral tissue repair and regeneration during wound healing in Montastraea cavernosa and Porites astreoides were assessed histologically and ultrastructurally by examining colony fragments exposed to elevated nitrate, phosphate, and pCO₂. In M. …

Stony Coral Species Diversity And Cover In The Florida Keys Using Design-Based Sampling, Leanne M. Rutten, Mark Chiappone, Dione W. Swanson, Steven Miller

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Large-scale sampling of stony coral species richness, species distribution, and cover was undertaken at 423 Florida Keys sites between Miami and SW of Key West during 2005 and 2007. A two-stage, stratified random sampling design employed belt transects to enumerate numbers of species and point-intercept surveys to quantify cover. The sampling design incorporated ten reef and hard-bottom habitats from < 1 m to 27 m depth, as well as oceanographic regions and areas inside and outside of protected management zones. These data provide insights into the spatial extent and factors influencing stony coral biodiversity. For stony corals, a pool of ~50 taxa encompassing the Orders Milleporina and Scleractinia, including species and morphotypes, was recorded. Significant differences were found in species richness and cover among cross-shelf habitats, with great values on inner shelf margin patch reefs, followed by deeper fore-reef slope habitats that extended to the 27 m depth limit sampled. In contrast, the shallow fore-reef, especially in areas historically dominated by the branching coral Acropora palmata, yielded relatively low numbers of species and cover that are presently dominated by smaller, brooding corals such as Porites astreoides and Favia fragum.

Population Structure In The Brown Tube Sponge (Agelas Conifera) In The Florida Reef Tract And Caribbean, Jennifer M. Hester, Vincent P. Richards, Kevin Feldheim, Mahmood S. Shivji

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Sponges are broadly distributed, occur in a wide range of habitats, and comprise a substantial amount of the biomass and macro-biodiversity on coral reefs. Despite their ubiquity in reef ecosystems, their dispersal dynamics are largely unknown. Here we report on gene flow and population structure for the common brown tube sponge, Agelas conifera (Demospongiae, Poecilosclerida) in the Florida reef tract and Caribbean. Over 300 samples collected from ten geographically distinct locations throughout Florida and the Caribbean are being analyzed for variation at eight microsatellite loci. Preliminary results from screening four loci in 295 individuals from eight locations indicated significant population …

Population Status Of Acropora Corals In The Florida Keys, Steven Miller, Mark Chiappone, Leanne M. Rutten, Dione W. Swanson

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Population declines of staghorn coral (Acropora cervicornis) and elkhorn coral (A. palmata) are often-cited examples of Caribbean reef change since the 1970s, due, in part, to disease and localized effects from storms and predation. Both corals were listed as threatened on the U.S. Endangered Species List based upon range-wide decline and poor recovery. A spatially intensive survey undertaken in the Florida Keys of Acropora corals quantified habitat distribution, colony abundance, size, and condition at 235 sites spanning over 200 km in 2007. A two-stage stratified sampling design using belt transects incorporated cross-shelf habitats and no-fishing management …

Population Genetic Structure Of A Coral Reef Ecosystem Apex Predator, The Gray Reef Shark (Carcharhinus Amblyrhynchos), Rebekah L. Horn, William Robbins, Douglas Mccauley, Philip Lobel, Mahmood S. Shivji

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Sharks play a major functional role as apex predators in coral reef ecosystems, raising concerns that their ongoing overexploitation will compromise the integrity and sustainability of reefs. The gray reef shark (Carcharhinus amblyrhynchos) is a strongly coral reef associated species whose populations are known to have declined substantially in some regions. There is no information on population structure in this species to aid in their management and conservation. We are assessing genetic structure in this species by using entire mitochondrial control region sequences and 15 nuclear microsatellite loci as markers. 93 gray reef shark samples were obtained from …

Ultrastructural And Histological Analysis Of Dark Spot Syndrome In Siderastrea Siderea And Agaricia Agaricites, Dorothy-Ellen A. Renegar, Patricia Blackwelder, J. D. Miller, D. J. Gochfeld, Alison L. Moulding

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Dark Spot Syndrome (DSS) typically manifests in scleractinian corals as lesions of varying color, size, shape and location that can result in skeletal changes and tissue death. A causative agent for DSS has not yet been identified. The objective of this study was histological and ultrastructural comparison of the cellular and skeletal characteristics of DSS-affected and healthy Siderastrea siderea and Agaricia agaricites. The greater resolution possible with transmission electron microscopy (TEM) revealed microbial activity and tissue changes not resolvable utilizing histology. DSS-affected tissue had less integrity, with increasing cellular degradation and vacuolization. A high concentration of electron dense inclusions, …

Recovery Of Injured Giant Barrel Sponges, Xestospongia Muta, Offshore Southeast Florida, David S. Gilliam, Brian K. Walker, S. J. Saelens, Daniel P. Fahy, Vladimir N. Kosmynin

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

Giant barrel sponges, Xestospongia muta, are abundant and important components of the southeast Florida reef system, and are frequently injured from anthropogenic and natural disturbances. There is limited information on the capacity of X. muta to recover from injury and on methods to reattach X. muta fragments. In late 2002, hundreds of barrel sponges offshore southeast Florida (Broward County) were accidentally injured during an authorized dredging operation. In early 2003, two to three months post-injury, 93% of 656 assessed injured sponges appeared to be recovering. In 2006, three years post-injury, nearly 90% of 114 monitored sponges continued to show …