Oceanography and Atmospheric Sciences and Meteorology Commons^™

State Of The River Report For The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, And Contaminants 2013, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University

State of the River Report

No abstract provided.

Carbon Farming In Wa, Department Of Agriculture And Food, Western Australia, Department Of Regional Development And Lands, Western Australia

Natural resources published reports

Fact sheets:

1. Applying biochar to improve soil quality and crop productivity

2. Reducing methane emissions from cattle using feed additives

3. Cattle breeding for lower greenhouse gas emissions

4. Managing genetic codes to reduce methane emissions from cattle

5. Managing pastures and stocking rate to reduce methane emissions from cattle

6. Claying as a method of increasing soil carbon content

7. Green and brown manuring as part of carbon farming

8. Permanent environmental plantings to earn carbon credits

9. Nitrous oxide emissions from agricultural soils

10. Sheep genetics in methane reduction

11. Managing sheep pastures to reduce methane production …

Seasonal Dynamics Of Mesodinium Rubrum In Chesapeake Bay, Matthew D. Johnson, Doane K. Stoecker, Harold G. Marshall

Biological Sciences Faculty Publications

The photosynthetic ciliate Mesodinium rubrum is a common member of coastal phytoplankton communities that is well adapted to low-light, turbid ecosystems. It supports the growth of, or competes with, harmful dinoflagellate species for cryptophyte prey, as well as being a trophic link to copepods and larval fish. We have compiled data from various sources (n = 1063), on the abundance and distribution of M. rubrum in Chesapeake Bay and its tributaries. Because M. rubrum relies on obtaining organelles from cryptophyte algae to maintain rapid growth, we also enumerated cryptophyte algae in the portion of these samples that we collected …

Phytoplankton In Virginia Lakes And Reservoirs, Harold G. Marshall

Biological Sciences Faculty Publications

This study involves a phytoplankton summer/autumn survey in 46 Virginia lakes and reservoirs during 2010-2012. A total of 307 taxa were identified which included several filamentous and colonial cyanabacteria in bloom concentrations. With the exception of one natural lake, the other sites sampled represent impoundments created decades ago, with the majority presently classified as meso- or eutrophic. Among the cyanobacteria were 6 known toxin producers (Anabaena circinalis, Anabaena spiroides, Aphanizomenon flos-aquae, Cylindrospermopsis raciborskii, Limnothrix redekei, and Microcystis aeruginosa). The study characterizes phytoplankton populations in these aging freshwater habitats taken from a large number …

Pronounced Genetic Structure In A Highly Mobile Coral Reef Fish, Caesio Cuning, In The Coral Triangle, Amanda S. Ackiss, Shinta Pardede, Eric D. Crandall, Ma Carmen A. Ablan-Lagman, Ambariyanto, November Romena, Paul H. Barber, Kent E. Carpenter

Biological Sciences Faculty Publications

The redbelly yellowtail fusilier Caesio cuning has a tropical Indo-West Pacific range that straddles the Coral Triangle, a region of dynamic geological history and the highest marine biodiversity on the planet. Previous genetic studies in the Coral Triangle indicate the presence of multiple limits to connectivity. However, these studies have focused almost exclusively on benthic, reef-dwelling species. Schooling, reef-associated fusiliers (Perciformes: Caesionidae) account for a sizable portion of the annual reef catch in the Coral Triangle, yet to date, there have been no indepth studies on the population structure of fusiliers or other mid-water, reef-associated planktivores across this region. We …

A Preliminary Examination Of An In Situ Dual Dye Approach To Measuring Light Fluxes In Lotic Systems, Elizabeth C. Minor, Elizabeth James, Jay A. Austin, Veronica Nelson, Ryan Lusk, Kenneth Mopper

Chemistry & Biochemistry Faculty Publications

Light is a critical parameter in aquatic ecosystems, affecting primary production and in situ photochemistry. However, measuring light exposure for suspended particles or dissolved components in a dynamic water column can be challenging with existing Eulerian approaches. Here, we assess the simultaneous deployment of two dyes differing in photolability (rhodamine WT and fluorescein) as a Lagrangian measure of sunlight exposure in a lotic system. Fluorescein is sensitive to light exposure; rhodamine WT is relatively photostable. We examined dye fluorescence at various pH, salinity, and temperature conditions. We also tested dye photolability as a function of pH and wavelength range. In …

Changes In Net Ecosystem Production Over The Past 40 Years In Arctic Tundra Ponds Near Barrow, Alaska: Application Of Historic And Modern Techniques, Nickole Ann Miller

Open Access Theses & Dissertations

Arctic environments have gained interest recently due to their sensitivity to climate change. As warming has created longer growing seasons, extended ice-free periods as well as permafrost thaw, the production in freshwater ecosystems has the potential to be greatly impacted. It is hypothesized that as climate change and warming occurs, increases in primary production will occur and ponds will become carbon sinks. Net ecosystem production (NEP) was determined using phytoplankton and periphyton samples collected weekly during the growing season (June - August) from arctic tundra ponds near Barrow, Alaska. Enrichment with 14C was used to determine both weekly photosynthetic rates …

Photographic Survey Of Benthos Provides Insights Into The Antarctic Fish Fauna From The Marguerite Bay Slope And The Amundsen Sea, Joseph T. Eastman, Margaret O. Amsler, Richard D. Aronson, Sven Thatje, James Mcclintock, Stephanie C. Vos, Jeffrey W. Kaeli, Hanumant Singh, Mario La Mesa

Ocean Engineering and Marine Sciences Faculty Publications

We reviewed photographic images of fishes from depths of 381–2282m in Marguerite Bay and 405–2007m in the Amundsen Sea. Marguerite Bay fishes were 33% notothenioids and 67% non-notothenioids. Channichthyids (47%) and nototheniids (44%) were the most abundant notothenioids. The deep-living channichthyid Chionobathyscus dewitti (74%) and the nototheniid genus Trematomus (66%) were the most abundant taxa within these two families. The most abundant non-notothenioids were the macrourid Macrourus whitsoni (72%) and zoarcids (18%). Amundsen Sea fishes were 87% notothenioids and 13% non-notothenioids, the latter exclusively Macrourus whitsoni. Bathydraconids (38%) and artedidraconids (30%) were the most abundant notothenioids. We observed that Macrourus …

Seabed Classification For Trawlability Determined With A Multibeam Echo Sounder On Snakehead Bank In The Gulf Of Alaska, Thomas C. Weber, Chris Rooper, John L. Butler, Darin Jones, Chris Wilson

Center for Coastal and Ocean Mapping

—Rockfishes (Sebastes spp.) tend to aggregate near rocky, cobble, or generally rugged areas that are difficult to survey with bottom trawls, and evidence indicates that assemblages of rockfish species may differ between areas accessible to trawling and those areas that are not. Consequently, it is important to determine grounds that are trawlable or untrawlable so that the areas where trawl survey results should be applied are accurately identified. To this end, we used multibeam echosounder data to generate metrics that describe the seafloor: backscatter strength at normal and oblique incidence angles, the variation of the angle-dependent backscatter strength within 10° …

Biochemical Aspects Of The Thermal Sensitivity And Energy Balance Of Polar, Tropical And Subtropical Teleosts, Eloy Martinez

USF Tampa Graduate Theses and Dissertations

The maintenance of a functional energy balance in ectothermic fauna could be challenging in a thermally disparate environment. Biochemical adaptations at the enzyme and membrane levels allows for a set compensatory mechanism that allow the individual to maintain an energetic surplus, thus allocating energy for growth and reproduction. The present work describes how the energetic machinery in the cell, particularly the mitochondrion, could be affected by temperature changes. More specifically, this work aimed to determine how environmental temperature affects the mitochondria energetic performance of fishes from disparate thermal regimes.

Mitochondrial ATP production efficiency was evaluated in fishes from polar, tropical …

Gradients In Season, Latitude, And Sea Ice: Their Effect On Metabolism And Stable Isotopic Composition Of Antarctic Micronekton, Erica H. Ombres

USF Tampa Graduate Theses and Dissertations

Respiration, metabolic enzyme assays, and body composition parameters were measured in the Antarctic krill Euphausia superba during the summer, fall and winter on the Western Antarctic Peninsula (WAP). E. superba of all sizes decrease their metabolism from the summer to the winter. These same parameters were also measured along the WAP during the austral fall 2010. E. superba's enzyme activity indicated that there was a latitudinal gradient to the decline in metabolism along the WAP with the more northerly sites having significantly higher metabolic enzyme activities than the sites to the south.

Carbon (δ¹³C) and nitrogen (δ^{15 …}

Meta-Analysis Reveals Complex Marine Biological Responses To The Interactive Effects Of Ocean Acidification And Warming, Ben P. Harvey, Dylan Gwynn-Jones, Philippa J. Moore

Research outputs 2013

Ocean acidification and warming are considered two of the greatest threats to marine biodiversity, yet the combined effect of these stressors on marine organisms remains largely unclear. Using a meta-analytical approach, we assessed the biological responses of marine organisms to the effects of ocean acidification and warming in isolation and combination. As expected biological responses varied across taxonomic groups, life-history stages, and trophic levels, but importantly, combining stressors generally exhibited a stronger biological (either positive or negative) effect. Using a subset of orthogonal studies, we show that four of five of the biological responses measured (calcification, photosynthesis, reproduction, and survival, …

Chlorophyll Fluorescence And Thermal Stress In Archaias Angulatus (Class Foraminifera), Heidi M. Toomey

USF Tampa Graduate Theses and Dissertations

ABSTRACT

Benthic foraminifers that host algal symbionts are similar to corals in that they rely on their algal endosymbionts for their energy needs, calcify prolifically, and are sensitive to changes in environmental conditions. They are abundant in the benthos of coastal coral-reef areas and are found throughout the tropical and subtropical regions. Pulse Amplitude Modulated (PAM) chlorophyll fluorometry and chlorophyll a extraction techniques were used to quantify and compare the photosynthetic responses of the benthic foraminiferal, Archaias angulatus and their isolated endosymbionts, Chlamydomonas hedleyi, to short-term changes in temperature. Maximum quantum efficiency (F_v/F_m) and rapid …

A History Of Place: Using Phytolith Analysis To Discern Holocene Vegetation Change On Sanak Island, Western Gulf Of Alaska, Cricket C. Wilbur

Antioch University Dissertations & Theses

This study investigated a terrestrial climate proxy, phytoliths, as a complimentary approach to documenting the dynamics of present and past vegetation on Sanak Island, the largest island in a small island group in the eastern Aleutian archipelago, and as a new basis by which to interpret Holocene environmental variability in Alaska. A phytolith reference collection was established from 59 selected plant species of maritime tundra belonging to 27 families. The grass species and a sedge species produced abundant phytolith forms whereas the majority of dicotyledons in this study were trace producers of phytoliths. A paleoenvironmental reconstruction from fossil phytoliths recovered …

Nursing Females Are More Prone To Heat Stress: Demography Matters When Managing Flying-Foxes For Climate Change, Stephanie T. Snoyman, Jasmina Munich, Culum Brown

Ecological Impacts of Climate Change Collection

Determining the underlying mechanisms responsible for species-specific responses to climate change is important from a species management perspective. The grey-headed flying-fox, Pteropus poliocephalus, is listed as vulnerable but it also a significant pest species for orchardists and thereby presents an interesting management conundrum. Over the last century, the abundance of the grey-headed flying-fox, P. poliocephalus, in Australia has decreased due to a variety of threatening processes but has increased in abundance in urban areas. These flying-foxes are highly susceptible to extreme heat events which are predicted to increase in the future under climate change scenarios. Exceptionally hot days result in …

Depth-Variable Settlement Patterns And Predation Influence On Newly Settled Reef Fishes (Haemulon Spp., Haemulidae), Lance K. B. Jordan, Kenyon C. Lindeman, Richard E. Spieler

Marine & Environmental Sciences Faculty Articles

During early demersal ontogeny, many marine fishes display complex habitat-use patterns. Grunts of the speciose genus Haemulon are among the most abundant fishes on western North Atlantic coral reefs, with most species settling to shallow habitats (≤12 m). To gain understanding into cross-shelf distributional patterns exhibited by newly settled stages of grunts (<2 cm total length), we examined: 1) depth-specific distributions of congeners at settlement among sites at 8 m, 12 m, and 21 m, and 2) depth-variable predation pressure on newly settled individuals (species pooled). Of the six species identified from collections of newly settled specimens (n = 2125), Haemulon aurolineatum (tomtate), H. flavolineatum(French grunt), and H. striatum (striped grunt) comprised 98% of the total abundance; with the first two species present at all sites. Prevalence of H. aurolineatum and H. flavolineatumdecreased substantially from the 8-m site to the two deeper sites. In contrast, …

Stream-Associated Amphibian Habitat Assessment In The Portland-Vancouver Metropolitan Region, Andrew Evans Dietrich

Dissertations and Theses

This study assessed the influence of landscape development on stream-associated amphibians in forested riparian areas within the Portland-Vancouver metropolitan region. Human alteration of landscapes may dramatically affect the ecology of neighboring aquatic systems. It was hypothesized that lotic amphibians would be negatively associated with greater amounts of landscape development and positively associated with forested area within the surrounding watershed. Thirty-seven 1st-3rd order streams were sampled between June 21st and September 21st in 2011. Streams potentially providing adequate habitat for stream-obligate amphibians were randomly selected. Amphibians were surveyed along 30-meter stream transects using an active-cover search (ACS). Environmental variables associated with …

Moving Forward: Preventing Water Shortage For Nevada, Sandra Blandon, Brianna Lyon

Anthropology 100: Feast and Famine In a Global World Poster Assignment

Southern Nevada is located in the arid Mojave Desert, which averages about 4 inches of rain each year. Southern Nevada gets about 90% of its water supply from the Colorado River. Seven western states and Mexico share the river. This means that The Colorado River provides water to 25 million people.

Density And Diversity Of Penaeid Shrimp And Fish Species In Near-Shore Seagrass Beds Of Northern Biscayne Bay, Florida (Usa), Robin Cascioli

HCNSO Student Theses and Dissertations

Seagrass beds serve critical functions in coastal Florida ecosystems. The beds serve as nursery habitat for many juvenile reef fish species and provide protection for many types of benthic organisms found in Biscayne Bay. They help stabilize sediment that would otherwise increase turbidity around coral reefs, filter the water of contaminants, and help support an entire food web. Three species of seagrass were found at the study sites in northern Biscayne Bay: Thalassia testudinum, Halodule wrightii, and Syringodium filiforme. This study focused on understanding the organism habitat interaction by determining the species diversity, seasonal densities, and the …

Global Trophic Position Comparison Of Two Dominant Mesopelagic Fish Families (Myctophidae, Stomiidae) Using Amino Acid Nitrogen Isotopic Analyses, C. Anela Choy, Peter C. Davison, Jeffrey C. Drazen, Adrian Flynn, Elizabeth J. Gier, Joel C. Hoffman, Jennifer P. Mcclain-Counts, Todd W. Miller, Brian N. Popp, Steve W. Ross, Tracey Sutton

Marine & Environmental Sciences Faculty Articles

The δ15N values of organisms are commonly used across diverse ecosystems to estimate trophic position and infer trophic connectivity. We undertook a novel cross-basin comparison of trophic position in two ecologically well-characterized and different groups of dominant mid-water fish consumers using amino acid nitrogen isotope compositions. We found that trophic positions estimated from the δ15N values of individual amino acids are nearly uniform within both families of these fishes across five global regions despite great variability in bulk tissue δ15N values. Regional differences in the δ15N values of phenylalanine confirmed that bulk tissue δ15N values reflect region-specific water mass biogeochemistry …

Microbial Effects On The Production And Transformation Of Surfactants Within The Microlayer And Subsurface Waters In Application To Remote Sensing Techniques, Katie E. Vella

HCNSO Student Theses and Dissertations

The sea surface microlayer is a millimeter-scale interfacial layer between the atmosphere and the ocean. A number of studies have suggested that there is a unique ecosystem for marine bacteria in the sea surface microlayer, but little information exists on the microbial community composition of this ecosystem due to sampling complexities. In this work, we present an improved method to sample and compare the bacterial diversity of the sea surface microlayer with that of subsurface water at the same site. Bacterial samples were collected from the sea surface microlayer with a sampling method, which minimized sample contamination from the research …

Air-Sea Interface In Hurricane Conditions, Alexander Soloviev, A. Fujimura, Silvia Matt

Marine & Environmental Sciences Faculty Articles

Improving hurricane prediction models requires better understanding of complex processes taking place at the air-sea interface at high wind speeds. The change of the air-sea interaction regime in hurricane conditions has been linked to the mechanism of direct disruption of the air-sea interface by pressure fluctuations working against the surface tension force. This can be achieved through the Kelvin-Helmholtz type instability. In order to investigate this mechanism, we have conducted a series of 3D numerical experiments using a volume of fluid multiphase model. The experiments were initialized with either a flat interface or short wavelets and wind stress applied at …

Phylogenetics Links Monster Larva To Deep-Sea Shrimp., Heather D Bracken-Grissom, Darryl L Felder, Nicole L Vollmer, Joel W Martin, Keith A Crandall

Computational Biology Institute

Mid-water plankton collections commonly include bizarre and mysterious developmental stages that differ conspicuously from their adult counterparts in morphology and habitat. Unaware of the existence of planktonic larval stages, early zoologists often misidentified these unique morphologies as independent adult lineages. Many such mistakes have since been corrected by collecting larvae, raising them in the lab, and identifying the adult forms. However, challenges arise when the larva is remarkably rare in nature and relatively inaccessible due to its changing habitats over the course of ontogeny. The mid-water marine species Cerataspis monstrosa (Gray 1828) is an armored crustacean larva whose adult identity …

Light And Vision In The Deep-Sea Benthos: Ii. Vision In Deep-Sea Crustaceans, Tamara M. Frank, Sönke Johnsen, Thomas W. Cronin

Marine & Environmental Sciences Faculty Articles

Using new collecting techniques with the Johnson-Sea-Link submersible, eight species of deep-sea benthic crustaceans were collected with intact visual systems. Their spectral sensitivities and temporal resolutions were determined shipboard using electroretinography. Useable spectral sensitivity data were obtained from seven species, and in the dark-adapted eyes, the spectral sensitivity peaks were in the blue region of the visible spectrum, ranging from 470 to 497 nm. Under blue chromatic adaptation, a secondary sensitivity peak in the UV portion of the spectrum appeared for two species of anomuran crabs:Eumunida picta (λ_max 363 nm) and Gastroptychus spinifer (λ_max 383 nm). Wavelength-specific …

Light And Vision In The Deep-Sea Benthos: I. Bioluminescence At 500-1000 M Depth In The Bahamian Islands, Sönke Johnsen, Tamara M. Frank, Steven H.D. Haddock, Edith A. Widder, Charles G. Messing

Marine & Environmental Sciences Faculty Articles

Bioluminescence is common and well studied in mesopelagic species. However, the extent of bioluminescence in benthic sites of similar depths is far less studied, although the relatively large eyes of benthic fish, crustaceans and cephalopods at bathyal depths suggest the presence of significant biogenic light. Using the Johnson-Sea-Link submersible, we collected numerous species of cnidarians, echinoderms, crustaceans, cephalopods and sponges, as well as one annelid from three sites in the northern Bahamas (500–1000 m depth). Using mechanical and chemical stimulation, we tested the collected species for light emission, and photographed and measured the spectra of the emitted light. In addition, …

Development And Characterization Of 11 Novel Microsatellite Loci For The Roundscale Spearfish Tetrapturus Georgii And Their Cross-Species Amplification Among Other Istiophorid Species, Andrea M. Bernard, Kevin A. Feldheim, Mahmood S. Shivji

Marine & Environmental Sciences Faculty Articles

Eleven novel polymorphic microsatellite loci were developed and characterized for the recently validated roundscale spearfish Tetrapturus georgii. Characterization of these markers, based on 35 roundscale spearfish from the western North Atlantic, revealed two to 21 alleles per locus with an average expected heterozygosity (HE) of 0·09–0·94, and all loci conformed to Hardy–Weinberg expectations. Cross-amplification of these 11 loci against all other eight known istiophorid species indicates promising prospects for the utility of these markers for istiophorids in general.

Fecal Indicator Bacteria In Knitting Mill Creek With A Comparison Of Methods Used To Enumerate E. Coli, Manju Nagarajan

OES Theses and Dissertations

This research seeks to evaluate the impact of an urban, multi-use neighborhood on the bacteriological quality of water in Knitting Mill Creek, a blind arm of the Lafayette River, a sub-estuary of the lower Chesapeake Bay. A principal objective was to determine the effects of rainfall, a surrogate for run-off, on water-column concentrations of fecal-indicator bacteria (FIB). I collected water samples weekly (September 2009-December 2010) and biweekly (January 2010-December 2011) at a storm-sewer outfall and a nearby marina and quantified their E. coli and enterococci concentrations using Colilert-18 and Enterolert, most-probable-number assays. In addition, I took monthly samples for these …

Nantucket Shellfish Management Plan, Matthew Herr, Frank Dutra, Tara Riley, Sarah Oktay, Peter Boyce, Doug Smith, Carl Sjolund, Jake Kritzer, Cormac Collier, Dave Fronzuto, Kristin Uiterwyk, Jack Wiggin, Dale Leavitt, Steve Bliven, Allison Novelly, Dan Hellin

Urban Harbors Institute Publications

Nantucket’s shellfisheries are significant both locally and nationally. Locally, commercial and recreational shellfishing are critical to the Island’s history, culture, and economy. Nationally, the Island’s largest commercial shellfishery — the Nantucket bay scallop fishery is one of the last wild-harvest bay scallop fisheries in the country, but there is growing concern over the health of the overall population and the sustainability of the fishery. Given the importance of the shellfisheries on Nantucket and the drastic decline of bay scallop populations elsewhere along the Atlantic coast, there is a compelling interest in ensuring that the Town’s shellfish are managed to sustain …

Limnological Assistance For Lake Mead National Recreation Area: Quarterly Report, Period Ending September 30, 2012, Margaret N. Rees

Limnological Studies

Continuation of Project 1

• The research effort titled Growth of adult quagga mussels within Las Vegas Wash/Las Vegas Bay is ongoing.

Continuation of Project 2

• Additional content was contributed to the future NPS-funded U.S. Geological Survey Circular ‘state-of-the-science’ report for Lakes Mead and Mohave. UNLV performed a new co-editing and coordinating task related to this product as the major focus of this quarter’s effort; the master version of this report is on schedule for delivery to the editorial team during the first week of October 2012.

Modification Activities:

Extended Short-term Continued Limnological Assistance

Quagga Mussel Objectives:

• Most juvenile/adult quagga mussel …

Small-Scale Mapping Of Indeterminate Arborescent Acroporid Coral (Acropora Cervicornis) Patches, Brian K. Walker, E. A. Larson, Alison L. Moulding, David S. Gilliam

Marine & Environmental Sciences Faculty Articles

Western Atlantic populations of the staghorn coral Acropora cervicornis have drastically declined over the past few decades. Hence, interest in its ecology and spatial extent has increased. Acroporid corals with indeterminate arborescent growth like A.cervicornis primarily reproduce asexually by fragmentation, which can lead to extensive monotypic patches. Since fragmentation is a major component in indeterminate acroporid reproduction, these patches may expand or move over time. Periodic perimeter mapping facilitates comparison of patch areas to determine movement or expansion. A repeatable, low-cost method using a differential GPS carried by a snorkeler was employed to map the perimeter of A.cervicornis …