Oceanography and Atmospheric Sciences and Meteorology Commons^™

Distribution, Growth, And Impact Of The Coral-Excavating Sponge, Cliona Delitrix, On The Stony Coral Communities Offshore Southeast Florida, Ari Halperin

HCNSO Student Theses and Dissertations

Bioerosion is a major process that affects the carbonate balance on coral reefs, and excavating sponges from the genus Cliona are some of the most important bioeroders on Caribbean reefs. The orange boring sponge, Cliona delitrix, is an abundant excavating sponge offshore southeast Florida that frequently colonizes dead portions of live stony corals, killing live coral tissue as it grows. With the recent decline in coral cover attributed to combined environmental and anthropogenic stressors, the increasing abundance of excavating sponges poses yet another threat to the persistence of Caribbean coral reefs.

In the first part of this study, I …

The Non-Lethal Effects Of Climate Change On The Territoriality Of Lottia Gigantea, Tracey Gunanto, Christina Chavez, Jessica Martinez, William G. Wright

Student Scholar Symposium Abstracts and Posters

The intertidal zone has been described as ground zero for global warming. Here, the owl limpet, Lottia gigantea, adapted to the cool ocean temperatures, must withstand a few hours of baking sun during day-time low tides. This hardship is predicted to increase in frequency and severity in the future as the globe warms. Our research hypothesized that heat events compromise territorial behavior of L. gigantea. All observations and experiments were performed at Inspiration Point near Newport Beach, California. We measured the natural radiant temperature of tagged limpets during day-time low tides using a field-calibrated infrared “thermogun”. We also …

Assessment Of Macroinvertebrate Communities And Heavy Metal Contamination Along The Intracoastal Waterway In Fort Lauderdale, Florida, Robert Bernhard

HCNSO Student Theses and Dissertations

Sediments from four areas adjacent to marinas and a background site in the Intracoastal Waterway were assessed for macroinvertebrate composition and heavy metal contamination. Sediment core samples were collected in 2004 and 2005 for analyses of macroinvertebrate composition and sediment grain size. Additional sediment samples were collected in 2005 for chemical analyses of metals (Al, As, Cd, Cr, Cu, Fe, Pb, Hg, Ni and Zn). MANOVA and dendograms using Bray-Curtis similarity matrices grouped the sites into two clusters: the 3 sites closest to the New River formed one group, and the two end sites formed the other. The sites nearest …

Book Review - Wild Connection: What Animal Courtship And Mating Tell Us About Human Relationships, J. Matthew Hoch

Marine & Environmental Sciences Faculty Articles

No abstract provided.

The Economic Viability Of Cocoa Crop Insurance In Ghana, Justin D. Mckinley

Graduate Theses and Dissertations

This study was motivated by the fact that Ghanaian cocoa producers face lower yields than other main cocoa producing counties which in turn increases food insecurity for smallholder producers. In addition, low yields experienced by Ghanaian producers is a driving factor for forest degradation and deforestation as cocoa producers encroach further into previously undisturbed forests in efforts to increase their incomes. There are currently production methods to achieve higher yields readily available in Ghana; however, many producers choose not to adopt these methods because they are seen as too risky, or simply cannot adopt them due to financial/credit constraints. A …

Comment On “Chemically Mediated Behavior Of Recruiting Corals And Fishes: A Tipping Point That May Limit Reef Recovery”, Andrew H. Baird, Vivian R. Cumbo, Joana Figueiredo, Saki Harii, Tom Hata, Joshua S. Madin

Marine & Environmental Sciences Faculty Articles

Dixson et al. (2014) report that coral larvae navigate towards chemical cues associated with healthy reefs and avoid cues from degraded reefs. However, the swimming capabilities of coral larvae and well-established patterns of recruitment and reef hydrodynamics indicate that coral larvae will not be able to use these cues to recruit to healthy reefs. Perfuming degraded reefs, as suggested by Dixson et al (2014), will not enhance recovery rather it will distract from the difficult task of reducing fishing effort and improving water quality.

Marginal Coral Populations: The Densest Known Aggregation Of Pocillopora In The Galápagos Archipelago Is Of Asexual Origin, Iliana B. Baums, Meghann Devlin-Durante, Beatrice A. A. Laing, Joshua S. Feingold, Tyler B. Smith, Andrew Bruckner, Joao Monteiro

Marine & Environmental Sciences Faculty Articles

Coral populations at distributional margins frequently experience suboptimal and variable conditions. Recurrent El Niño-Southern Oscillation (ENSO) warming events have caused extensive mortality of reef-building corals in the Eastern Pacific, and particularly impacted branching pocilloporid corals in the Galápagos Islands. Pocillopora spp. were previously more common and formed incipient reefs at several locations in the archipelago but now occur as scattered colonies. Here, we report an unusually concentrated aggregation of colonies and evaluate their current genetic diversity. In particular we focus on a large population of 1614 live Pocillopora colonies found in a volcanic lagoon along the southern shore of Isabela …

Growth Rates In Gulf Of Mexico Red Snapper, Lutjanus Campechanus, Before And After The Deepwater Horizon Blowout, Elizabeth Shea Herdter

USF Tampa Graduate Theses and Dissertations

The Deepwater Horizon blowout occurred on April 20^th, 2010 and released nearly 5 million barrels of crude oil into the northern Gulf of Mexico causing pollution of the water and sediment inhabited by many fishes for at least 87 days while the wellhead went uncapped. Populations of the Gulf of Mexico Red snapper, Lutjanus campechanus, an important fish to the ecology and economy in the region, exhibit affinity to shallow water oil infrastructure such as the Deepwater Horizon making them especially vulnerable to crude oil contamination. The objective of this study is to determine growth of Red …

Polycyclic Aromatic Hydrocarbon Metabolites As A Biomarker Of Exposure To Oil In Demersal Fishes Following The Deepwater Horizon Blowout, Susan Susan Snyder

USF Tampa Graduate Theses and Dissertations

The Deepwater Horizon blowout occurred on April 20th, 2010, releasing 4.9 million barrels of Louisiana crude oil into the Gulf of Mexico (GoM). Subsequent to the Deepwater Horizon blowout, sediment cores revealed oil on the northern GoM seafloor and abnormal skin lesions were seen in GoM fishes. Exposure to polycyclic aromatic hydrocarbons (PAHs), a component of crude oil, in fish has been associated with many sublethal effects, including cancer and population-level effects. Using a biomarker of exposure to PAHs, this thesis evaluates inter-species, temporal and spatial differences in exposure to hydrocarbon contamination between three species of fish with varying levels …

Use Of A Towed Camera System For Estimating Reef Fish Populations Densities On The West Florida Shelf, Sarah Elizabeth Grasty

USF Tampa Graduate Theses and Dissertations

Reef fish species tend to reside over high relief habitat which makes them difficult to sample with traditional gears such as nets and trawls. Therefore, implementing and understanding the strengths and weaknesses of new approaches which incorporate acoustic and optical methods has become a priority for reef fish stock assessment. Beginning in June of 2013, a towed camera system known as the Camera-Based Assessment Survey System (C-BASS) has been used to visualize over 500 kilometers of transect and record more than 80 hours of video over several habitats in the Gulf of Mexico. Surveys have been completed on the West …

Cloning And Characterization Of Il-1Β, Il-8, Il-10, And Tnfα From Golden Tilefish (Lopholatilus Chamaeleonticeps) And Red Snapper (Lutjanus Campechanus), Kristina L. Deak

USF Tampa Graduate Theses and Dissertations

Cytokines are pleiotropic and redundant signaling molecules that govern the inflammatory response and immunity, a critical ecological parameter for organism success and population growth. Produced at the site of injury or pathogen intrusion by a variety of cell types, cytokines mediate cell-signaling in either an autocrine or paracrine manner. The type and magnitude of the cytokine milieu produced subsequently dictates the strength and form of immune response. As the most diverse vertebrate group, with a high sensitivity to contaminants, fish represent an important foci for the evaluation of immune system evolution, function, and alteration upon toxicant exposure. While many cytokines …

The Effects Of An Extended Power Plant Shutdown On The Florida Manatee (Trichechus Manatus Latirostris) In Port Everglades, Florida, Christopher Grissett

HCNSO Student Theses and Dissertations

Florida manatees (Trichechus manatus latirostris) seek out warmer waters during winter months when ambient water temperatures drop below 20 degrees Celsius. Over time, manatees have discovered artificial warm water sites from power plant discharges in addition to natural sites such as springs and passive thermal refugia (PTRs). The Florida Power and Light (FPL) Port Everglades power plant in Broward County is one such artificial warm water refuge used by manatees. This plant was shutdown on July 16, 2013, and is expected to remain off line for at least three years during demolition and construction of a new facility. …

Habitat And Seasonal Distribution Of The North American River Otter (Lontra Canadensis) And Vertebrate Species Assemblages In Two Protected Areas Of The Florida Everglades, Catherine Faye Hamilton

HCNSO Student Theses and Dissertations

The Florida Everglades ecosystem is threatened by human development, increased pollution, freshwater scarcity, and invasive species; factors that have negatively impacted the Everglades and native species health and populations. Man-made canals and levies have redirected the natural flow of fresh water from Lake Okeechobee into the Florida Everglades, starving central and south Florida ecosystems of necessary fresh water and nutrients. Through the efforts of the Comprehensive Everglades Restoration Project (CERP), freshwater is being redirected back into central and south Florida, returning the sheet flow of water back into the Everglades. Monitoring species abundance in the Everglades is a beneficial conservational …

Aptian To Santonian Foraminiferal Biostratigraphy And Paleoenvironmental Change In The Sverdrup Basin As Revealed At Glacier Fiord, Axel Heiberg Island, Canadian Arctic Archipelago, Claudia J. Schröder-Adams, Jens O. Herrle, Ashton F. Embry, James W. Haggart, Jennifer M. Galloway, Adam T. Pugh, David M. Harwood

ANDRILL Research and Publications

Exceptional exposures of a High Arctic Cretaceous sedimentary record were studied at Glacier Fiord, Axel Heiberg Island. The succession reveals a complex Aptian to Santonian paleoenvironmental history of the Sverdrup Basin that documents several global events. Foraminiferal faunas in combination with rare macrofossil occurrences permit the distinction of nine zones that facilitate biostratigraphic correlations to other High Arctic locales, the Beaufort Mackenzie Basin and the Western Interior Sea. The depositional environment as exposed in the Christopher, Hassel, Bastion Ridge and Kanguk formations changed frequently from a shelf to a shoreface setting. Most sequence boundaries appear to be conformable where shoaling …

Protein Recycling In Bering Sea Algal Incubations, Eli K. Moore, H. Rodger Harvey, Jessica F. Faux, David R. Goodlett, Brook L. Nunn

OES Faculty Publications

Protein present in phytoplankton represents a large fraction of the organic nitrogen and carbon transported from its synthesis in surface waters to marine sediments. Yet relatively little is known about the longevity of identifiable protein in situ, or the potential modifications to proteins that occur during bloom termination, protein recycling and degradation. To address this knowledge gap, diatom-dominated phytoplankton was collected during the Bering Sea spring blooms of 2009 and 2010, and incubated under darkness in separate shipboard degradation experiments spanning 11 and 53 d, respectively. In each experiment, the protein distribution was monited over time using shotgun proteomics, …

Dynamics And Survival Of Coral And Octocoral Juveniles Following Disturbance On Patch Reefs Of The Florida Reef Tract, Lucy Bartlett

USF Tampa Graduate Theses and Dissertations

Over the past several decades, rapid decline in adult stony-coral (comprising the Orders Scleractinia and Anthomedusae, specifically Family Milleporidae) cover has occurred concurrent with an increase in adult octocoral (Octocorallia/gorgonian) cover along the Florida Reef Tract. In January 2010, the Florida Keys experienced extremely cold air and water temperatures, below the lethal threshold for many reef organisms including corals. Very high stony-coral mortality occurred on some patch reefs. The newly-available space created by this disturbance event provided the opportunity for recruitment and settlement of new coral larvae and other reef organisms.

The goal of this study was to examine post-disturbance …

Assessments Of Surface-Pelagic Drift Communities And Behavior Of Early Juvenile Sea Turtles In The Northern Gulf Of Mexico, Robert F. Hardy

USF Tampa Graduate Theses and Dissertations

Knowledge of species distribution and habitat associations are essential for conservation measures. Such information is lacking for many marine species due to their occupancy of broad and ephemeral habitats that are difficult to access for study. Sea turtles, specifically the surface-pelagic juvenile stage of some species, are a group for which significant knowledge gaps remain surrounding their distribution and habitat use. Recent research has confirmed the long-standing hypothesis that the surface-pelagic juvenile stage occurs within surface-pelagic drift communities (SPDC). Within the North Atlantic and surrounding basins, the holopelagic macroalgae Sargassum spp. dominates SPDC and serves as a remotely-detectable indicator of …

Iron Sources And Dissolved-Particulate Interactions In The Seawater Of The Western Equatorial Pacific, Iron Isotope Perspectives, M. Labatut, F. Lacan, C. Pradoux, J. Chmeleff, A. Radic, J. W. Murray, F. Poitrasson, Anne M. Johansen, F. Thil

All Faculty Scholarship for the College of the Sciences

This work presents iron isotope data in the western equatorial Pacific. Marine aerosols and top core margin sediments display a slightly heavy Fe isotopic composition (δ⁵⁶Fe) of 0.33 ± 0.11‰ (2SD) and 0.14 ± 0.07‰, respectively. Samples reflecting the influence of Papua New Guinea runoff (Sepik River and Rabaul volcano water) are characterized by crustal values. In seawater, Fe is mainly supplied in the particulate form and is found with a δ⁵⁶Fe between −0.49 and 0.34 ± 0.07‰. The particulate Fe seems to be brought mainly by runoff and transported across continental shelves and slopes. …

Effects Of Extreme Climate Events On Tea (Camellia Sinensis) Functional Quality Validate Indigenous Farmer Knowledge And Sensory Preferences In Tropical China, Selena Ahmed, John Richard Stepp, Colin M. Orians, Timothy S. Griffin, Corene Matyas, Albert Robbat, Sean Cash, Dayuan Xue, Chunlin Long, Uchenna Unachukwu, Sarabeth Buckley, Edward J. Kennelly

Publications and Research

Climate change is impacting agro-ecosystems, crops, and farmer livelihoods in communities worldwide. While it is well understood that more frequent and intense climate events in many areas are resulting in a decline in crop yields, the impact on crop quality is less acknowledged, yet it is critical for food systems that benefit both farmers and consumers through high-quality products. This study examines tea (Camellia sinensis; Theaceae), the world’s most widely consumed beverage after water, as a study system to measure effects of seasonal precipitation variability on crop functional quality and associated farmer knowledge, preferences, and livelihoods. Sampling was conducted in …

Measuring The Socio-Economic Characteristics Of A Lionfish Derby Event, Adam Nardelli, Stephanie Green, L. Akins, David W. Kerstetter

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

No abstract provided.

Predation Thresholds In Marine Microbial Communities Applied To Environments With Low Prey Abundances, Bonnie Bailey

OES Theses and Dissertations

Prokaryotes (Bacteria and Archaea) comprise the largest component of biomass in the world's oceans. Their abundances are controlled by resource availability, viral infections and protist grazing. Many pico- and nano-eukaryotic predators grow almost as quickly as their prey, and greatly increase in numbers as soon as their prey do, leading in tum to depletion in prokaryotes. It is still unclear however, as to what extent microbial predators are able to feed in low prey environments, most prominently in the largest biome on Earth, the deep sea (below l 000 m depth). It has been hypothesized that in low prey environments, …

Towards A Paradigm Shift In The Modeling Of Soil Organic Carbon Decomposition For Earth System Models, Yujie He

Open Access Dissertations

Soils are the largest terrestrial carbon pools and contain approximately 2200 Pg of carbon. Thus, the dynamics of soil carbon plays an important role in the global carbon cycle and climate system. Earth System Models are used to project future interactions between terrestrial ecosystem carbon dynamics and climate. However, these models often predict a wide range of soil carbon responses and their formulations have lagged behind recent soil science advances, omitting key biogeochemical mechanisms. In contrast, recent mechanistically-based biogeochemical models that explicitly account for microbial biomass pools and enzyme kinetics that catalyze soil carbon decomposition produce notably different results and …

Application Of High-Resolution Spectral Absorbance Measurements To Determine Dissolved Organic Carbon Concentration In Remote Areas, Armine Avagyan, Benjamin R. K. Runkle, Lars Kutzbach

Biological and Agricultural Engineering Faculty Publications and Presentations

Accurate quantification of dissolved organic carbon (DOC) in surface and soil pore waters is crucial for understanding changes in water resources under the influence of climate and land use changes. Sampling and laboratory analysis of DOC content at a sufficient temporal frequency are especially difficult to achieve for natural DOC sources like the extensive boreal and arctic mire landscapes due to their remoteness. Therefore, the goals of this paper are (1) to investigate the performance of a portable, high-resolution ultraviolet–visible light spectroscopic method for determining the DOC content of surface and soil pore water samples from a boreal mire complex …

Effects Of Ocean Acidification On Chlorophyll Content, C. Del Fierro, R. Lloyd, H. El-Askary

e-Research: A Journal of Undergraduate Work

Airborne pollutants contribute to ocean acidification and hence to the associated chlorophyll content level. Previous work showed that falling aerosols causing ocean acidification would in turn result in bleaching and productivity loss in coral reef builders. Chlorophyll content has been used as a measure of the concentration of the photosynthetic pigment chlorophyll a (the most common "green" chlorophyll) in the ocean. In our work we have monitored the change in chlorophyll content obtained from the Moderate Resolution Imaging Spectroradiometer (MODIS) sensor on board Terra/Aqua satellites from 2000-2009 over selected pilot areas. Moreover, we have used the Goddard Chemistry Aerosol Radiation …

Mammalian Keratin Associated Proteins (Krtaps) Subgenomes: Disentangling Hair Diversity And Adaptation To Terrestrial And Aquatic Environments, Imran Khan, Emanuel Maldonado, Vitor Vasconcelos, Stephen J. O'Brien, Warren E. Johnson, Agostinho Antunes

Marine & Environmental Sciences Faculty Articles

Background: Adaptation of mammals to terrestrial life was facilitated by the unique vertebrate trait of body hair, which occurs in a range of morphological patterns. Keratin associated proteins (KRTAPs), the major structural hair shaft proteins, are largely responsible for hair variation.

Results: We exhaustively characterized the KRTAP gene family in 22 mammalian genomes, confirming the existence of 30 KRTAP subfamilies evolving at different rates with varying degrees of diversification and homogenization. Within the two major classes of KRTAPs, the high cysteine (HS) subfamily experienced strong concerted evolution, high rates of gene conversion/recombination and high GC content. In contrast, high glycine-tyrosine …

Possible Recovery Of Acropora Palmata (Scleractinia:Acroporidae) Within The Veracruz Reef System, Gulf Of Mexico: A Survey Of 24 Reefs To Assess The Benthic Communities, Elizabeth Anne Larson, David S. Gilliam, Mauricio Lopez Padierna, Brian K. Walker

Marine & Environmental Sciences Faculty Articles

Recent evidence shows that Acropora palmata within the Veracruz Reef System, located in the southwestern Gulf of Mexico, may be recovering after the die off from the flooding of the Jamapa River and a dramatic cold water event in the 1970s. Since this decline, few surveys have documented the status of A. palmata. The 28 named reefs in the system are divided into 13 northern and 15 southern groups by the River. Between 2007 and 2013, we surveyed 24 reefs to assess the benthic communities. Seven of the 11 reefs surveyed in the northern group and all in the …

Modeling Flightless Galapagos Seabirds As Impacted By El Nino And Climate Change, Brian Seth Putman

HCNSO Student Theses and Dissertations

Noteworthy species endemic to the Galapagos Islands off Ecuador are two flightless birds, the Galapagos Penguin (Spheniscus mendiculus) and Flightless Cormorant (Phalacrocrax harrisi). Both adapted increased swimming ability at the cost of flight. This however has limited their ability to find richer feeding grounds in times of low resource availability, or to escape potential predators. Their population numbers, though small, were stable. Stress on this stability has increased since human arrival. Various invasive species from pets, farm animals and rats to even mosquito vectors of avian disease accompanied humans. . El Nino Southern Oscillation or ENSO …

Growing Conditions For Algae, Angeles Mora, Tamar Melkonian, Alejandro Calderon-Urrea

STAR Program Research Presentations

With the growing demands of water in California and the increasing cost of fossil fuels to operate water-cleaning equipment, Algae was cultivated in different concentrations of Nitrogen, Phosphorus, and Potassium (NPK) during different trails to identify the best growing conditions for the removal water contaminates. Before testing algae in waste water, the Algae: Dunaliella Primolecta, Chlorella Vulgaris, and Scenedesmus Dimorphus were cultivated in four different media containing distilled water and plant vitamins. The different mediums used include: Orchid Grow More (20-20-20), Miracle Grow (30-10-10), Murashige & Skoog, and Orchid Bloom Boster (11-35-15). As a result of the investigation, the algae, …

Microbial Community Assembly Found With Sponge Orange Band Disease In Xestospongia Muta (Giant Barrel Sponge), Rebecca Mulheron

HCNSO Student Theses and Dissertations

The giant barrel sponge, Xestospongia muta is an iconic and essential species of the coral reefs in South Florida. The sponge has primary roles providing ecosystem services and creating unique habitats for diverse microbial communities. On April 27, 2012 an outbreak of Sponge Orange Band Disease (SOB) was detected off the coast of South Florida. The disease begins with sponge bleaching, followed by mesohyl or “mesohyl” necrosis and often total mesohyl disintegration. Sampling from two diseased populations at Boynton Beach and Fort Lauderdale, FL took place on May 11th and May 29th, 2012. Each of the nine diseased sponges from …

Long-Term Stony Coral Transplantation Success Offshore Southeast, Florida, Usa, Theresa Elizabeth Robitaille

HCNSO Student Theses and Dissertations

Transplanted coral (Order: Scleractinia) colony condition was surveyed at five injury event sites, two coral nurseries, and one impact minimization location off the coast of Broward County, Florida, USA in 2012. Because stony corals are long-lived and slow growing, generally growing less than one centimeter in diameter per year, determining transplantation success requires long-term (greater than two years) monitoring. Long-term monitoring efforts, however, are rarely completed. This study is unique in that it examined stony coral transplantation success of several projects over a time period of 6-17 years. Control colonies were also surveyed in order to compare naturally growing coral …