Oceanography and Atmospheric Sciences and Meteorology Commons^™

Pelagic Habitat Use By Juvenile Reef Fishes In The Gulf Of Mexico, Katie Bowen, Tracey Sutton

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

The assemblage composition, abundance, frequency of occurrence, and vertical distribution of juvenile reef fishes in the offshore pelagic habitat of the northern Gulf of Mexico are described. This study, a component of the NOAA-supported Offshore Nekton Sampling and Analysis Program, is the first to examine juvenile reef fish distributions across the oceanic northern Gulf of Mexico after the Deepwater Horizon oil spill. Results presented here are derived from a 3-month, spring/summer research cruise in 2011 on the M/V Meg Skansi. A 10-m² MOCNESS midwater trawl was used to sample 45 stations from the surface to a depth of …

Climate. A Period Of Consequence: Environmental Literature Of 2006 (2006), Shaun O’Connell

New England Journal of Public Policy

The author talks about the consequences of not respecting the climate and understanding global warming will cause ecocide and our own extinction.

Reprinted from New England Journal of Public Policy 21, no. 2 (2007), article 5.

Species Specific Microcalcification In Reef Building Caribbean Corals In Ocean Acidification Conditions, Ashley M. Dungan

HCNSO Student Theses and Dissertations

Coral reefs are one of the most economically important ecosystems on the planet. Despite their great contribution to the world economy, anthropogenic influence via carbon dioxide emissions is leading to unprecedented changes with concerns about subsequent negative impacts on reefs. Surface ocean pH has dropped 0.1 units in the past century; in spite of this rapid shift in oceanic chemistry, it is unclear if individual species or life stages of Caribbean stony corals will be more sensitive to ocean acidification (OA). Examined is the relationship between CO₂-induced seawater acidification, net calcification, photosynthesis, and respiration in three model Caribbean …

Bacterial Community Dynamics In Marine Sponge Cinachyrella Kuekenthali Under Irradiance And Antibiotics, Nidhi Vijayan

HCNSO Student Theses and Dissertations

The Marine sponge Cinachyrella sp used in this study are commonly found in offshore South Florida and Caribbean waters and appeared to be resilient in closed system aquaculture. Marine sponges host diverse bacterial symbionts that are distinct compared to bacteria found in ambient seawater, however the roles of a large fraction of the bacterial community in marine sponges are unknown. Comparison of symbiotic to aposymbiotic (bacteria-free) sponges could provide information about interactions (metabolic and physiologic) between the bacteria and sponge. In this study, a single Cinachyrella kuekenthali individual was subsectioned into explants (N=240) in order to provide identical bacterial communities …

Linkages Among Fluorescent Dissolved Organic Matter, Dissolved Amino Acids And Lignin-Derived Phenols In River-Influenced Ocean Margins, Youhei Yamashita, Cédric G. Fichot, Yuan Shen, Rudolf Jaffé, Ronald Benner

Faculty Publications

Excitation emission matrix (EEM) fluorescence spectroscopy coupled with parallel factor analysis (PARAFAC) is commonly used to investigate the dynamics of dissolved organic matter (DOM). However, a lack of direct comparisons with known biomolecules makes it difficult to substantiate the molecular composition of specific fluorescent components. Here, coincident surface-water measurements of EEMs, dissolved lignin, and total dissolved amino acids (TDAA) acquired in the northern Gulf of Mexico were used to investigate the relationships between specific fluorescent components and DOM biomolecules. Two terrestrial humic-like components identified by EEM-PARAFAC using samples obtained from river to offshore waters were strongly linearly correlated with dissolved …

The Development Of A Fluorescence-Based Reverse Flow Injection Analysis (Rfia) Method For Quantifying Ammonium At Nanomolar Concentrations In Oligotrophic Seawater, William Abbott

USF Tampa Graduate Theses and Dissertations

The goal of this thesis was to adopt a reverse flow injection analysis (rFIA) technique to the fluorometric analysis of the reaction o-phthaldialdehyde (OPA) with ammonium, allowing accurate measurements of ammonium concentrations lower than the detection limit of the widely used indophenol blue (IPB) colorimetric method while accounting for the background fluorescence of seawater. Ammonium is considered an essential nutrient for primary productivity, especially in the nutrient depleted surface ocean where as the most reduced form of dissolved inorganic nitrogen, it is readily assimilated via metabolic pathways. Challenges in the quantification of ammonium require more sensitive analytical techniques for …

Reproductive Parameters Of Two Coastal Pelagic Fishes Off Southeast Florida: Blackfin Tuna, Thunnus Atlanticus, And Little Tunny, Euthynnus Alletteratus, Sonia Ahrabi-Nejad, David Kerstetter, Nancy J. Brown-Peterson, Patricia Blackwelder, Dorothy-Ellen A. Renegar

Marine & Environmental Sciences Faculty Proceedings, Presentations, Speeches, Lectures

No abstract provided.

Fine-Grained Bacterial Compositional Analsysis Of The Port Everglades Inlet (Broward County, Fl) Microbiome Using High Throughput Dna Sequencing, Lauren M. O'Connell

HCNSO Student Theses and Dissertations

Port Everglades Inlet is one of the busiest ports in the country and is a point source of pollution to surrounding beaches and offshore corals from heavy boat traffic and urban runoff. Understanding fluctuations of bacterioplankton communities in major port inlets is important due to their impacts on surrounding marine environments. To understand annual microbial fluctuations, the 16s rRNA V4 hypervariable region was sequenced using Illumina high-throughput DNA sequencing technology. Surface samples were taken weekly for one year to generate baseline fluctuations in the microbial community. Total reads of 1.4 million were generated with a final count of 16,384 Operational …

A Bat-Guano-Derived Δ15N And Δ13C Record Of Paleoenvironmental Change: Zidită Cave, Romania, Daniel Martin Cleary

USF Tampa Graduate Theses and Dissertations

Because nitrogen isotopes are fractionated along the soil-plant-insect-bat-guano pathway, it may be possible to reconstruct environmental and climatic changes reflected in the nitrogen isotopic composition of guano. A 1.5-m core of bat guano from Zidită Cave (western Romania) provides a record of climatic and anthropogenic influence on the regional nitrogen cycle and paleoenvironmental controls on nitrogen transforming processes. Increasing and decreasing trends of nitrogen isotopic composition (δ¹⁵N values) correspond well with changes in the influence of farming practices, deforestation, and forest expansion. These influences likely had a significant effect on the openness of the nitrogen cycle, resulting in …

Biodiversity And Ecological Dynamics Of Sciophilous Benthic Communities On Artificial Plates: Emphasis On Reef Sponges, Caidra Elizabeth Hassanzada

HCNSO Student Theses and Dissertations

Low light intensity habitats harbor unique sciophilous benthic communities and are a source of novel and unique sponge fauna. However, the community structure of these habitats is poorly studied to date. Thus, this study attempts to understand the composition and structure of sciophilous sponge populations in southeast Florida. Fifty limestone plates were placed on a shallow reef in Fort Lauderdale for two years (2010-2012). To identify the sponge community and their patterns over time, all plates were photographed at the end of each year. Then, samples were taken from each of the live sponge specimens observed on the plates and …

Role Of The Strengthened El Nino Teleconnection In The May 2015 Floods Over The Southern Great Plains, S.-Y. Wang, W.-R. Huang, H.-H. Hsu, R. R. Gillies

Plants, Soils, and Climate Faculty Publications

The climate anomalies leading to the May 2015 floods in Texas and Oklahoma were analyzed in the context of El Niño teleconnection in a warmer climate. A developing El Niño tends to increase late-spring precipitation in the southern Great Plains, and this effect has intensified since 1980. Anthropogenic global warming contributed to the physical processes that caused the persistent precipitation in May 2015: Warming in the tropical Pacific acted to strengthen the teleconnection toward North America, modification of zonal wave 5 circulation that deepened the stationary trough west of Texas, and enhanced Great Plains low-level southerlies increasing moisture supply from …

Management Options For Water-Repellent Soils In Australian Dryland Agriculture, M. M. Roper, S. L. Davies, P. S. Blackwell, D. J. M. Hall, D. Bakker, R. Jongepier, P. R. Ward

Natural Resources Research Articles

Water-repellent (‘non-wetting’) soils are a major constraint to agricultural production in southern and south-west Australia, affecting >10 Mha of arable sandy soils. The major symptom is dry patches of surface soil, even after substantial rainfall, directly affecting agricultural production through uneven crop and pasture germination, and reduced nutrient availability. In addition, staggered weed germination impedes effective weed control, and delayed crop and pasture germination increases the risk of wind erosion. Water repellency is caused by waxy organic compounds derived from the breakdown of organic matter mostly of plant origin. It is more prevalent in soils with a sandy surface texture; …

Modeling Micro-Topographic Controls On Boreal Peatland Hydrology And Methane Fluxes, F. Cresto Aleina, Benjamin R. K. Runkle, T. Kleinen, Lars Kutzbach, J. Schneider, V. Brovkin

Biological and Agricultural Engineering Faculty Publications and Presentations

Small-scale surface heterogeneities can influence land-atmosphere fluxes and therefore carbon, water and energy budgets on a larger scale. This effect is of particular relevance for high-latitude ecosystems, because of the great amount of carbon stored in their soils. We introduce a novel micro-topographic model, the Hummock-Hollow (HH) model, which explicitly represents small-scale surface elevation changes. By computing the water table at the small scale, and by coupling the model with a process-based model for soil methane processes, we are able to model the effects of micro-topography on hydrology and methane emissions in a typical boreal peatland. In order to assess …

Temporal Variation In Optical Properties Of Chromophoric Dissolved Organic Matter (Cdom) In Southern California Coastal Waters With Nearshore Kelp And Seagrass, Catherine D. Clark, Warren J. De Bruyn, Paige Aiona

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Optical properties of chromophoric dissolved organic matter (CDOM) were measured in surf zone waters in diurnal field studies at a Southern California beach with nearshore kelp and seagrass beds and intertidal plant wrack. Absorption coefficients (aCDOM(300 nm)) ranged from 0.35 m21 to 3.7 m21 with short-term variability<1 h, increases at ebb and flood tides and higher values (6 m21) during an offshore storm event. Spectral slopes (S) ranged from 0.0028 nm21 to 0.017 nm21, with higher values after the storm; S was generally inversely correlated with aCDOM(300 nm). 3-D excitation–emission matrix spectra (EEMs) for samples with lower S values had humic-type peaks associated with terrestrial material (A, C), marine microbial material (M) and protein peaks, characteristic of freshly produced organic material. Samples with high S values had no or reduced protein peaks, consistent with aged material. Fluorescent indexes (f450/f500 >2.5, BIX>1.1) were consistent with microbial aquatic sources. Leachates of senescent kelp and seagrass had protein and humic-type EEM peaks. After solar simulator irradiation (4 h), protein peaks rapidly photochemically degraded, humic-type peak C increased in intensity and peak M disappeared. Optical characteristics of kelp leachates were most similar to field samples, …

A Scientific Basis For Regulating Deep-Sea Fishing By Depth, Jo Clarke, Rosanna Milligan, David M. Bailey, Francis Neat

Marine & Environmental Sciences Faculty Articles

The deep sea is the world’s largest ecosystem, with high levels of biodiversity and many species that exhibit life-history characteristics thatmake them vulnerable to high levels of exploitation. Many fisheries in the deep sea have a track record of being unsustainable. In the northeast Atlantic, there has been a decline in the abundance of commercial fish species since deep-sea fishing commenced in the 1970s. Current management is by effort restrictions and total allowable catch (TAC), but there remain problems with compliance and high levels of bycatch of vulnerable species such as sharks. The European Union is currently considering new legislation …

Groundwater Chemistry Of The Weaber Plain (Goomig Farmlands): Baseline Results 2010–13, Adam Lillicrap, Richard J. George Dr, Arjen Ryder, D L. Bennett

Resource management technical reports

The Ord River Irrigation Area (ORIA) is located in the north-east of the Kimberley region of Western Australia, near the town of Kununurra. The irrigation area was established in 1963 and over time developed to the current extent of 14 000 hectares (ha). The Weaber Plain (Goomig Farmlands) area is located north-north-east of the existing irrigation area, 30km from Kununurra, and has been identified as being suitable for irrigated agriculture for many decades. However, it was not until 2009, with state government support, that the 7400ha project commenced, with construction starting in 2010. State and Australian government environmental approvals required …

Coastal Sediment Elevation Change Following Anthropogenic Mangrove Clearing, Heather Lyn Hayden, Elise F. Granek

Environmental Science and Management Faculty Publications and Presentations

Coastal mangrove forests along tropical shorelines serve as an important interface between land and sea. They provide a physical buffer protecting the coastline from erosion and act as sediment “traps” catching terrestrial sediment, thus preventing smothering of subtidal coral reefs. Coastal development that removes mangrove habitat may impact adjacent nearshore coral reefs through sedimentation and nutrient loading. We examined differences in sediment elevation change between patches of open-coast intact and anthropogenically cleared red mangroves (Rhizophora mangle) on the east side of Turneffe Atoll, Belize, to quantify changes following mangrove clearing. Samples were collected over a 24 month period at five …

Southeast Florida Coral Reef Fishery-Independent Baseline Assessment, Kirk Kilfoyle, Brian K. Walker, Dana P. Fisco, Steven G. Smith, Richard E. Spieler

Marine & Environmental Sciences Faculty Reports

Reef fishes are important biologic, ecologic, and economic resources of the marine ecosystem which must be managed for sustainability. Until recently, there was no long-term monitoring program in place to assess the condition of reef fish resources of the northern Florida Reef Tract (FRT) (northern Miami-Dade, Broward, Palm Beach, and Martin counties). An assessment/monitoring plan for the northern portion of the Florida reef tract was designed through a joint cooperative effort by scientists at the University of Miami, Rosenstiel School of Marine and Atmospheric Science (RSMAS), National Oceanic and Atmospheric Administration (NOAA)-Southeast Fisheries Science Center (SEFSC) and Nova Southeastern University …

Taxonomy Of The Bitentaculate Cirratulidae (Polychaeta), Stacy A. Tewari

Graduate Masters Theses

The bitentaculate cirratulid polychaetes are an important faunal element of both near shore and deep-sea benthic faunal communities. The true diversity of the family is currently unknown due to a large number of undescribed species and erroneously applied “cospmopolitan” names being applied to local species. Cirratulids have been misidentified even in the local waters near the University of Massachusetts Boston. The current study presents six new species from North America. Caulleriella venefica, Chaetozone anasimus, Chaetozone diodonta, and Chaetozone hystricosus are described from Boston Harbor and Massachusetts Bay where only two species had previously been reported. Aphelochaeta bullata …

Forecasting The Big Picture: Arctic Ecosystems, Climate Change, Shipping & Fisheries, Mary S. Wisz

ShipArc 2015 Conference

No abstract provided.

A Phylogenetic Revision Of Superfamily Himerometroidea (Echinodermata: Crinoidea), Kristian Taylor

HCNSO Student Theses and Dissertations

Superfamily Himerometroidea AH Clark, 1908 (Echinodermata: Crinoidea) (formerly Mariametroidea) is the second most speciose superfamily in order Comatulida. Although it includes some of the most common species on tropical western Pacific reefs, its phylogeny is poorly understood. Genus- to species-level taxa are currently distinguished by plastic morphological characters. We revised the superfamily from species- to family-levels using a combined morphological and molecular approach. A phylogeny using two nuclear and three mitochondrial markers recovered Colobometridae and Himerometridae as paraphyletic and Mariametridae and Zygometridae as polyphyletic. Within genus Himerometra (Himerometridae), sequence data and detailed morphological examinations of multiple specimens of H. magnipinna, …

Leucothoe Eltoni Sp. N., A New Species Of Commensal Leucothoid Amphipod From Coral Reefs In Raja Ampat, Indonesia (Crustacea, Amphipoda), James Darwin Thomas

Marine & Environmental Sciences Faculty Articles

A new species of leucothoid amphipod, Leucothoe eltoni sp. n., is described from coral reefs in Raja Ampat, Indonesia where it inhabits the branchial chambers of solitary tunicates. With an inflated first gnathopod superficially resembling the genus Paraleucothoe, this new species has a two-articulate maxilla 1 palp characteristic of the genus Leucothoe. While described from coral reef environments in tropical Indonesia and the Philippines, it is an established invasive species in the Hawaiian Islands. The most likely mode of introduction was a US Navy dry dock transported to Pearl Harbor in 1992 from Subic Bay, Philippines.

Radiocarbon Isotopic Classification Of Deep Tropical Forest Soils, Brooke Butler, Karis J. Mcfarlane, Jennifer Pett-Ridge, Katherine A. Heckman

STAR Program Research Presentations

Tropical forest soils have an important role in global carbon (C) stocks. Small changes in the cycling of C could drastically affect atmospheric carbon dioxide (CO2) concentrations and active cycling of carbon in a forest community. Currently, little is understood of how tropical forest soils will respond to the increasing global temperatures. To examine the effects of warming/ drought on losses of older versus younger soil C pools, we implemented radiocarbon (14C) isotopic characterization of various soil plot samples and depths from the Luquillo Experimental Forest, Puerto Rico. 14C was measured using Accelerated Mass Spectrometry (AMS) from catalytically condensed carbon …

Probing The Past 30-Year Phenology Trend Of Us Deciduous Forests, X. Yue, N. Unger, Xiaoyang Zhang, C.S. Vogel

GSCE Faculty Publications

Phenology is experiencing dramatic changes over deciduous forests in the USA. Estimates of trends in phenology on the continental scale are uncertain, however, with studies failing to agree on both the magnitude and spatial distribution of trends in spring and autumn. This is due to the sparsity of in situ records, uncertainties associated with remote sensing data, and the regional focus of many studies. It has been suggested that reported trends are a result of recent temperature changes, though multiple processes are thought to be involved and the nature of the temperature forcing remains unknown. To date, no study has …

Time-Series Evaluation Of Suspect Rickettsiales-Like Bacteria Presence In Acropora Cervicornis Off Of Broward County From Years 2001–2012, Steven Di Lauro

HCNSO Student Theses and Dissertations

Rickettsiales-like organisms (RLOs) are thought to be related to bacteria in the order Rickettsiales. They have been reported to occur in the staghorn coral (Acropora cervicornis), and this study investigated trends of infection over time, and in relation to the health of infected corals. This study focuses on tissue samples taken mostly from visibly healthy A. cervicornis thickets in Broward County, Florida, and processed for histological examination. Samples were originally collected and analyzed to document reproduction during years 2001 through 2012, and tissue loss diseases (white-band disease [WBD] types I and II, and rapid tissue loss). …

A Comparative Evaluation Of Mitigation Wetlands In Broward County, Florida, Using Chironomid (Ditera) Pupal Exuviae: A Potential Technique For Assessing Mitigation Success, Ryan St. George

HCNSO Student Theses and Dissertations

Wetland resources in South Florida are regulated at three redundant jurisdictional levels: local or municipal regulations set forth by many independent jurisdictions, State regulations derived directly from Florida Statutes, and Federal regulations promulgated primarily under the Clean Water Act. All three levels of government can have jurisdiction over projects that affect regulated wetland resources, yet inconsistent policies and standards remain and continue to confound regulators despite decades of intensive coordination efforts and a rapidly growing scientific research base. The size of a wetland mitigation area is of primary consideration when evaluating its perceived ecological value, although wetland mitigation areas constructed …

Climate Change Resilience And Socioeconomic Impacts Of Mpas And Mpa Networks In The Caribbean - Case Study: Evaluation Of The Effectiveness Of The Management Of Mpas And Coastal Zones In The Dominican Republic, Andrea Isabella Vogel

HCNSO Student Capstones

Many Caribbean nations have established MPAs to preserve marine biodiversity and maintain their economically important marine resources. In some Caribbean nations, in particular the Dominican Republic, most MPAs have failed in these respects and have remained “paper parks” due to being modeled along traditional conservation lines without careful consideration of socioeconomic factors, good management practices or increasingly important climate change factors. Successful Caribbean MPAs and MPA networks effectively function as refuges, attractions, sources of socioeconomic development and ecosystem-based climate change resilience mechanisms. The latter is of utmost importance to Small Island Developing States (SIDS) and other larger island developing states …

Assessing Biogeochemical Impacts And Environmental Conditions Associated With Cross-Shelf High Chlorophyll Plumes In The Northern Gulf Of Mexico, Erin Brooke Jones

Dissertations

The northern Gulf of Mexico is a complex marine system subject to episodic physical phenomena such as loop current eddies. Flow fields generated by these eddies can result in cross-shelf exchanges between riverine influenced shelf waters and the offshore water column. This study considers the impacts of high chlorophyll plumes (HCPs) resulting from cross-shelf exchanges to the bio-optical properties of affected waters and how these plumes are influenced by their environment. The seasonal, interannual and decadal chlorophyll cycles of the Gulf of Mexico and the northern Gulf of Mexico are described to provide context for evaluating the ecological effects of …

Benthic Invertebrate Communities And Habitat Characterization Of The Pourtalès Terrace, Florida With Analysis Of The Deepwater Coral Habitat Areas Of Particular Concern And The East Hump Marine Protected Area, Jana K. Ash

HCNSO Student Theses and Dissertations

The Pourtalès Terrace is a gently curved, narrow triangular platform that parallels the Florida Keys for 213 km running from southern Key Largo to between Key West and the Marquesas Keys. The main Terrace surface begins in 200 m and dips gently to approximately 450 m, where the Pourtalès Escarpment slopes steeply to the deep floor of the southern Straits of Florida. The Terrace platform exhibits a wide variety of Neogene-age geological features, including high-relief ledges, mounds, sinkholes and deep-water biogenic build-ups called bioherms. Previous research revealed dense and diverse benthic assemblages dominated by stylasterid hydrocorals, octocorals and sponges.

Many …

Urban Stream Burial Increases Watershed-Scale Nitrate Export, Jake J. Beaulieu, Heather E. Golden, Christopher D. Knightes, Paul M. Mayer, Sujay S. Kaushal, Michael J. Pennino, Clay P. Arango, David A. Balz, Colleen M. Elonen, Ken M. Fritz, Brian H. Hill

All Faculty Scholarship for the College of the Sciences

Nitrogen (N) uptake in streams is an important ecosystem service that reduces nutrient loading to downstream ecosystems. Here we synthesize studies that investigated the effects of urban stream burial on N-uptake in two metropolitan areas and use simulation modeling to scale our measurements to the broader watershed scale. We report that nitrate travels on average 18 times farther downstream in buried than in open streams before being removed from the water column, indicating that burial substantially reduces N uptake in streams. Simulation modeling suggests that as burial expands throughout a river network, N uptake rates increase in the remaining open …