Oceanography and Atmospheric Sciences and Meteorology Commons^™

State Of The River Report For The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, And Contaminants 2012, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University

State of the River Report

No abstract provided.

Standardized Precipitation Index: User Guide, Mark Svoboda, Michael Hayes, Deborah Wood

National Drought Mitigation Center: Faculty Publications

Over the years, there has been much discussion on what drought indices should be used in a particular climate and for what application. Many drought definitions and indices have been developed and attempts have been made to provide some guidance on this issue. With this in mind, the Interregional Workshop on Indices and Early Warning Systems for Drought was organized and held at the University of Nebraska-Lincoln, United States of America, from 8 to 11 December 2009. It was jointly sponsored by the School of Natural Resources (SNR) of the University of Nebraska, the United States National Drought Mitigation Center …

Implications Of Decade Time Scale Arctic Plant Community Change On Ecosystem Function, Mark Jason Lara

Open Access Theses & Dissertations

Almost half the global soil organic carbon pool is found in northern high latitudes. The majority of this soil carbon is stored in a greenhouse inert state within permafrost. As pronounced warming of high northern latitudes ensues, there is a strong likelihood that this substantial soil organic carbon pool will be mobilized to the atmosphere where it is likely to positively enhance greenhouse warming. Modeling studies suggest this positive feedback could alter future climate states of the Arctic and the globe, and affect how humans may need to adapt to climate change. Accordingly, understanding the patterns and controls and the …

Recent Changes In The Growth And Nutrient Limitation Of Benthic And Pelagic Algae In Arctic Tundra Ponds, Christina Hernandez

Open Access Theses & Dissertations

Arctic ponds are a dominant feature in Barrow, Alaska. Ponds may function as carbon sinks during the growing season from production of photosynthetic organisms like algae; however, little work has been done on this topic. Environmental changes have been occurring in the Arctic stemming from climate change and human perturbations. The focus of this study was to assess a historically studied region for changes in algal primary production that may have been produced due to increases in temperature over the past 40 years and increased human development. Additionally, this study aimed to determine nutrient limitation of algal production in the …

Synergistic Use Of Remote Sensing And Modeling For Tracing Dust Storms In The Mediterranean, D. G. Kaskaoutis, Anup K. Prasad, P. G. Kosmopoulos, P. R. Sinha, S. K. Kharol, P. Gupta, Hesham El-Askary, Menas Kafatos

Mathematics, Physics, and Computer Science Faculty Articles and Research

This study focuses on the detection of the dust source region and monitoring of the transport of the dust plume from its primary outflow to final deposition. The application area is the Sahara desert and the eastern Mediterranean, where two dust events occurred during the period 4–6 February 2009, an unusual event for a winter period. The Aqua-MODIS and OMI observations clearly define the spatial distribution of the dust plumes, while the CALIPSO observations of total attenuated backscatter (TAB) at 532 nm, depolarization ratio (DR), and attenuated color ratio (1064/532 nm) on 5 February 2009 provide a clear view and …

Fog- And Cloud-Induced Aerosol Modification Observed By The Aerosol Robotic Network (Aeronet), T. F. Eck, B. N. Holben, J. S. Reid, D. M. Giles, M. A. Rivas, Ramesh P. Singh, S. N. Tripathi, C. J. Bruegge, S. Platnick, G. T. Arnold, N. A. Krotkov, S. A. Carn, A. Sinyuk, O. Dubovik, A. Arola, J. S. Schafer, P. Artaxo, A. Smirnov, H. Chen, P. Goloub

Mathematics, Physics, and Computer Science Faculty Articles and Research

Large fine mode-dominated aerosols (submicron radius) in size distributions retrieved from the Aerosol Robotic Network (AERONET) have been observed after fog or low-altitude cloud dissipation events. These column-integrated size distributions have been obtained at several sites in many regions of the world, typically after evaporation of low-altitude cloud such as stratocumulus or fog. Retrievals with cloud-processed aerosol are sometimes bimodal in the accumulation mode with the larger-size mode often similar to 0.4-0.5 mu m radius (volume distribution); the smaller mode, typically similar to 0.12 to similar to 0.20 mu m, may be interstitial aerosol that were not modified by incorporation …

Gene Transcription In Sea Otters (Enhydra Lutris); Development Of A Diagnostic Tool For Sea Otter And Ecosystem Health, Lizabeth Bowen, A. Keith Miles, Michael Murray, Martin Haulena, Judy Tuttle, William Van Bonn, Lance Adams, James L. Bodkin, Brenda Ballachey, James A. Estes, M. Tim Tinker, Robin Keister, Jeffrey L. Stott

United States Geological Survey: Staff Publications

Gene transcription analysis for diagnosing or monitoring wildlife health requires the ability to distinguish pathophysiological change from natural variation. Herein, we describe methodology for the development of quantitative real-time polymerase chain reaction (qPCR) assays to measure differential transcript levels of multiple immune function genes in the sea otter (Enhydra lutris); sea otter-specific qPCR primer sequences for the genes of interest are defined. We establish a ‘reference’ range of transcripts for each gene in a group of clinically healthy captive and free-ranging sea otters. The 10 genes of interest represent multiple physiological systems that play a role in immuno-modulation, …

Do Bioclimate Variables Improve Performance Of Climate Envelope Models?, James I. Watling, Stephanie S. Romanach, David N. Bucklin, Carolina Speroterra, Laura A. Brandt, Leonard G. Pearlstine, Frank J. Mazzotti

United States Geological Survey: Staff Publications

Climate envelope models are widely used to forecast potential effects of climate change on species distributions. A key issue in climate envelope modeling is the selection of predictor variables that most directly influence species. To determine whether model performance and spatial predictions were related to the selection of predictor variables, we compared models using bioclimate variables with models constructed from monthly climate data for twelve terrestrial vertebrate species in the southeastern USA using two different algorithms (random forests or generalized linear models), and two model selection techniques (using uncorrelated predictors or a subset of user-defined biologically relevant predictor variables). There …

Global Air Temperature Variability Independent Of Sea-Surface Temperature Influences, Andrew C. Comrie, Gregory J. Mccabe

United States Geological Survey: Staff Publications

Mean global surface air temperature (SAT) and sea surface temperature (SST) display substantial variability on timescales ranging from annual to multi-decadal. We review the key recent literature on connections between global SAT and SST variability. Although individual ocean influences on SAT have been recognized, the combined contributions of worldwide SST variability on the global SAT signal have not been clearly identified in observed data.Weanalyze these relations using principal components of detrended SST, and find that removing the underlying combined annual, decadal, and multi-decadal SST variability from the SAT time series reveals a nearly monotonic global warming trend in SAT since …

Gonadal Abnormalities In Frogs (Lithobates Spp.) Collected From Managed Wetlands In An Agricultural Region Of Nebraska, Usa, Diana M. Papoulias, Matt S. Schwarz, Lourdes Mena

United States Geological Survey: Staff Publications

Nebraska’s Rainwater Basin (RWB) provides important wetland habitat for North American migratory birds. Concern exists that pesticide and nutrient runoff from surrounding row-crops enters wetlands degrading water quality and adversely affecting birds and wildlife. Frogs may be especially vulnerable. Plains leopard (Lithobates blairi) metamorphs from RWB wetlands with varying concentrations of pesticides were evaluated for a suite of biomarkers of exposure to endocrine active chemicals. Froglets had ovarian dysgenesis, high rates of testicular oocytes, and female-biased sex ratios however, there was no clear statistical association between pesticide concentrations and biomarkers. Data interpretation was hindered because timing and duration …

History And Evaluation Of National-Scale Geochemical Data Sets For The United States, David B. Smith, Steven M. Smith, John D. Horton

United States Geological Survey: Staff Publications

Six national-scale, or near national-scale, geochemical data sets for soils or stream sediments exist for the United States. The earliest of these, here termed the ‘Shacklette’ data set, was generated by a U.S. Geological Survey (USGS) project conducted from 1961 to 1975. This project used soil collected from a depth of about 20 cm as the sampling medium at 1323 sites throughout the conterminous U.S. The National Uranium Resource Evaluation Hydrogeochemical and Stream Sediment Reconnaissance (NUREHSSR) Program of the U.S. Department of Energy was conducted from 1975 to 1984 and collected either stream sediments, lake sediments, or soils at more …

Remote Sensing Of Evapotranspiration For Operational Drought Monitoring Using Principles Of Water And Energy Balance, Gabriel B. Senay, Stefanie Bohms, James P. Verdin

United States Geological Survey: Staff Publications

Evapotranspiration (ET) is an important component of the hydrologic budget because it reflects the exchange of mass and energy between the soil–water–vegetation system and the atmosphere. Prevailing weather conditions influence potential or reference ET through variables such as radiation, temperature, wind, and relativity humidity. In addition to these weather variables, actual ET (ET_a) is also affected by land cover type and condition, as well as soil moisture. The dependence of ET_a on land cover and soil moisture, and its direct relationship with carbon dioxide assimilation in plants, makes it an important variable for monitoring drought, crop yield, …

Development And Application Of Methods Used To Source Prehistoric Southwestern Maize: A Review, Larry Benson

United States Geological Survey: Staff Publications

Archaeological cobs free of mineral contaminants should be used to source the soils in which they were grown. Mineral contaminants often contain much higher concentrations of metals than vegetal materials and can alter a cob’s apparent metal and heavy-isotope content. Cleaning a cob via immersion in an acid solution for more than a few minutes will result in the incongruent and sometimes complete leaching of metals, including strontium (Sr), from the cob. When using ⁸⁷Sr/⁸⁶Sr to determine the location of potential agriculture fields, it is best to either integrate several depth-integrated soil samples or to integrate several …

On Thinning Of Chains In Mcmc, William A. Link, Mitchell J. Eaton

United States Geological Survey: Staff Publications

1. Markov chain Monte Carlo (MCMC) is a simulation technique that has revolutionised the analysis of ecological data, allowing the fitting of complex models in a Bayesian framework. Since 2001, there have been nearly 200 papers using MCMC in publications of the Ecological Society of America and the British Ecological Society, including more than 75 in the journal Ecology and 35 in the Journal of Applied Ecology.

2. We have noted that many authors routinely ‘thin’ their simulations, discarding all but every kth sampled value; of the studies we surveyed with details on MCMC implementation, 40% reported thinning.

3. Thinning …

Spatially Explicit Models For Inference About Density In Unmarked Or Partially Marked Populations, Richard B. Chandler, J. Andrew Royle

United States Geological Survey: Staff Publications

Recently developed spatial capture-recapture (SCR) models represent a major advance over traditional capture-recapture (CR) models because they yield explicit estimates of animal density instead of population size within an unknown area. Futhermore, unlike nonspatial CR methods, SCR models account for heterogeneity in capture probability arising from the juxtaposition of animal activity centers and sample locations. Although the utility of SCR methods is gaining recognition, the requirement that all individuals can be uniquely identified exludes their use in many contexts. In this paper, we develop models for situations in which individual recognition is not possible, thereby allowing SCR concepts to be …

On Thinning Of Chains In Mcmc, William A. Link, Mitchell J. Eaton

United States Geological Survey: Staff Publications

1. Markov chain Monte Carlo (MCMC) is a simulation technique that has revolutionised the analysis of ecological data, allowing the fitting of complex models in a Bayesian framework. Since 2001, there have been nearly 200 papers using MCMC in publications of the Ecological Society of America and the British Ecological Society, including more than 75 in the journal Ecology and 35 in the Journal of Applied Ecology.

2. We have noted that many authors routinely ‘thin’ their simulations, discarding all but every kth sampled value; of the studies we surveyed with details on MCMC implementation, 40% reported thinning.

3. Thinning …

Sea-Level History During The Last Interglacial Complex On San Nicolas Island, California: Implications For Glacial Isostatic Adjustment Processes, Paleozoogeography And Tectonics, Daniel R. Muhs, Kathleen R. Simmons, R. Randall Schumann, Lindsey T. Groves, Jerry X. Mitrovica, Deanna Laurel

United States Geological Survey: Staff Publications

San Nicolas Island, California has one of the best records of fossiliferous Quaternary marine terraces in North America, with at least fourteen terraces rising to an elevation of ~270 m above present-day sea level. In our studies of the lowest terraces, we identified platforms at 38–36 m (terrace 2a), 33–28 m (terrace 2b), and 13–8 m (terrace 1). Uranium-series dating of solitary corals from these terraces yields three clusters of ages: ~120 ka on terrace 2a (marine isotope stage [MIS] 5.5), ~120 and ~100 ka on terrace 2b (MIS 5.5 and 5.3), and ~80 ka (MIS 5.1) on terrace 1.We …

Tectonic Influences On The Preservation Of Marine Terraces: Old And New Evidence From Santa Catalina Island, California, R. Randall Schumann, Scott A. Minor, Daniel R. Muhs, Lindsey T. Groves, John P. Mcgeehan

United States Geological Survey: Staff Publications

The California Channel Islands contain some of the best geologic records of past climate and sea-level changes, recorded in uplifted, fossil-bearing marine terrace deposits. Among the eight California Channel Islands and the nearby Palos Verdes Hills, only Santa Catalina Island does not exhibit prominent emergent marine terraces, though the same terrace-forming processes that acted on the other Channel Islands must also have occurred on Santa Catalina. We re-evaluated previous researchers' field evidence and examined new topographic, bathymetric, and stream-profile data in order to find possible explanations for the lack of obvious marine terrace landforms or deposits on the island today. …

Groundwater Surface Trends In The North Florence Dunal Aquifer, Oregon Coast, Usa, Sarah Rebecca Doliber

Dissertations and Theses

The North Florence Dunal Aquifer is the only feasible source for drinking water for the coastal city of Florence, Oregon and Florence's Urban Growth Boundary. High infiltration rates and a shallow groundwater table leave the aquifer highly susceptible to contamination from septic tank effluent, storm runoff, chemical fertilizers and recreational ATV use throughout the dunes. Public interest in the quality and quantity of the aquifer water has been sparked since the City of Florence received a grant from the Environmental Protection Agency for a watershed protection and restoration project. Delineation of the shallow groundwater surface and its relationship to the …

Impact Of Vegetation On Land-Atmosphere Coupling Strength And Its Implication For Desertification Mitigation Over East Asia, Boksoon Myoung, Yong-Sang Choi, Suk-Jin Choi, Seon Ki Park

Mathematics, Physics, and Computer Science Faculty Articles and Research

Desertification of the East Asian drylands and the consequent dust transport have been serious concerns for adjacent Asian countries as well as the western United States. Tree planting has been considered one applicable strategy to mitigate the desertification. However, the desired effect of the tree planting would not be brought to fruition unless the newly planted trees change the coupling characteristics between the land and the atmosphere. Based on this perception, we attempt to clarify the effects of vegetation on the coupling strength between the atmosphere and land surface, and we suggest the most efficient areas of tree planting for …

Variability And Trends Of Aerosol Properties Over Kanpur, Northern India Using Aeronet Data (2001–10), Dimitris G. Kaskaoutis, Ramesh P. Singh, Ritesh Gautam, Manish Sharma, P. G. Kosmopoulos, S. N. Tripathi

Mathematics, Physics, and Computer Science Faculty Articles and Research

Natural and anthropogenic aerosols over northern India play an important role in influencing the regional radiation budget, causing climate implications to the overall hydrological cycle of South Asia. In the context of regional climate change and air quality, we discuss aerosol loading variability and trends at Kanpur AERONET station located in the central part of the Indo-Gangetic plains (IGP), during the last decade (2001-10). Ground-based radiometric measurements show an overall increase in column-integrated aerosol optical depth (AOD) on a yearly basis. This upward trend is mainly due to a sustained increase in the seasonal/monthly averaged AOD during the winter (Dec-Feb) …

Responses To Chemical Exposure By Foraminifera: Distinguishing Dormancy From Mortality, Benjamin James Ross

USF Tampa Graduate Theses and Dissertations

The Deepwater Horizon blowout in 2010 released an estimated 4.9 million barrels of crude oil into the Gulf of Mexico in the 83 days between the initial explosion and the capping of the well. Response included extensive use of Corexit© oil dispersant. Although South Florida was spared exposure by currents, this event highlights the need for effective bioassay organisms for coral reefs. Amphistegina spp. are benthic foraminifers that host diatom symbionts in a relationship similar to that of coral and their zooxanthellae. Amphistegina spp. occur abundantly in reef communities nearly worldwide, are easily collected and maintained in culture, and are …

Survey Of Aquatic Invasive Species In Selected Umpqua National Forest Lakes And Ponds, Mark D. Sytsma, Rich Miller

Center for Lakes and Reservoirs Publications and Presentations

Eleven lakes and ponds within the Umpqua National Forest were surveyed for invasive aquatic macrophytes, snails, bivalves, and crayfish during the summer of 2011. Yellow floating heart (Nymphoides peltata), an invasive floating leaf macrophyte species, was detected in Willow Sump within the Little River drainage. European ear snails (Radix auricularia), an invasive species present in several Umpqua National Forest waterbodies, were detected in Beaver Pond within the Steamboat Creek drainage. One native crayfish species, the signal crayfish (Pacifastacus leniusculus), was observed in Crayfish Lake within the Brice Creek drainage. Diverse assemblages of native plant species were observed in the lakes …

Climate Change Effects And Water Vulnerability In The Molalla Pudding River Basin, Oregon, Usa, Susan Amelia Wherry

Dissertations and Theses

Water management plans are typically developed using historical data records and historical return periods for extreme events, such as floods or droughts. Since these analyses of return periods typically assume a certain degree of stationarity (constant mean, standard deviation, distribution) in hydrologic variables, the potential future impacts of climate change are excluded. In developing water management plans, predicted changes to climate variables should be considered to evaluate the degree of non-stationarity that may exist in the future. In this way, regions most sensitive to climate change can be identified and managed appropriately. This study performed such a task by using …

Limnological Assistance For Lake Mead National Recreation Area: Quarterly Report, Period Ending December 31, 2011, Margaret N. Rees

Limnological Studies

Project 1

• Technical assistance with the implementation of the Interagency Monitoring Action Plan (IMAP) for Quagga Mussels is ongoing; remaining analyses are underway with report delivery rescheduled for 05/2012.
• Data have been delivered for Veliger abundance and settlement at different depths of Lake Mead with report delivery re-scheduled for 05/2012.
• Growth of adult quagga mussels within Las Vegas Wash/Las Vegas Bay
• The Interagency Quagga Mussel Meeting was held on 11/17/2011; the next meeting is scheduled for 02/16/2011.

Project 2

• Appendix 7, an addition to the Long-term Limnological and Aquatic Resource Monitoring and Research Plan for Lakes Mead and Mohave, has …

Climate Change And Climate Variability: El Salvador – Impacts On Productivity Of Grain Crops And Opportunities For Management And Improvement, P. V. Vara Prasad

INTSORMIL Presentations

1. Climate change and climate variability (past and future).

2. Climate change and variability in El Salvador (climate models).

3. Impact of temperature on grain yield of dry bean, maize and sorghum in El Salvador (crop simulation models).

4. Effects of temperature, drought and/or carbon dioxide: experimental evidence (response of grain sorghum, maize and dry bean).

5. Opportunities for crop management and genetic improvement.

Environmental Influences On Juvenile Fish Abundances In A River-Dominated Coastal System, Laure Carassou, Brian Dzwonkowski, Frank J. Hernandez, Jr., Sean P. Powers, William M. Graham, Kyeong Park, John Mareska

University Faculty and Staff Publications

We investigated the influence of climatic and environmental factors on variations in juvenile abundances of marine fishes in a river-dominated coastal system of the north-central Gulf of Mexico, where an elevated primary productivity sustains fisheries of high economic importance. Fish were collected monthly with an otter trawl at three stations near Mobile Bay from 1982 to 2007. Fish sizes were used to isolate juvenile stages within the data set, and monthly patterns in juvenile fish abundance and size were then used to identify seasonal peaks for each species. The average numbers of juvenile fish collected during these seasonal peaks in …

Surface Water Characteristics Of The Weaber Plain And Lower Keep River Catchments: Data Review And Preliminary Results, D L. Bennett, Richard J. George Dr

Resource management technical reports

In 2008, the Ord Irrigation Expansion Project was approved by the Western Australian Government to develop irrigated agriculture on the Weaber Plain.

An important concern is the effect the Weaber Plain agricultural development may have on the water quality of the downstream Border Creek and Keep River

This report assembles and reviews all available physico-chemical water quality data for the lower Keep River and Border Creek systems and presents data from the initial year of a targeted baseline monitoring program (June 2010 – June 2013).

Groundwater Chemistry Of The Weaber Plain: Preliminary Results, Adam Lillicrap, Paul Raper, Richard J. George Dr, D L. Bennett

Resource management technical reports

In 2008, the Ord Irrigation Expansion Project was approved by the Western Australian Government to develop irrigated agriculture on the Weaber Plain. Construction of the M2 supply channel connecting the ORIA and the Weaber Plain, and the final period of irrigation design, environmental management and related approval processes, commenced later in 2009. This process followed a protracted period of public and private industry planning and environmental assessment (Kinhill 2000). This report summarises an analysis of groundwater salinity trends on the Ivanhoe and Weaber plains and the preliminary results of an intensive water-quality sampling program carried out in 2010 as part …

Simulated Effects Of Varied Landscape-Scale Fuel Treatments On Carbon Dynamics And Fire Behavior In The Klamath Mountains Of California, Kevin J. Osborne

Master's Theses

I utilized forest growth model (FVS-FFE) and fire simulation software (FlamMap, Randig), integrated through GIS software (ArcMap9.3), to quantify the impacts varied landscape-scale fuel treatments have on short-term onsite carbon loss, long-term onsite carbon storage, burn probability, conditional flame length, and mean fire size. Thirteen fuel treatment scenarios were simulated on a 42,000 hectare landscape in northern California: one untreated, three proposed by the US Forest Service, and nine that were spatially-optimized and developed with the Treatment Optimization Model in FlamMap. The nine scenarios developed in FlamMap varied by treatment intensity (10%, 20%, and 30% of the landscape treated) and …