Natural Resources and Conservation Commons^™

Rnai: Applications In Vertebrate Pest Management, Katherine Horak

United States Department of Agriculture Wildlife Services: Staff Publications

Sequence-directed inhibition of protein synthesis by RNAi has potential as a means to control pest wildlife. Species specific by design, RNAi reduces impacts on nontarget species and the environment. Additional research advancing the field of RNAi-based management of vertebrate pest wildlife is timely.

Despite the potential diverse applications of RNAi technology in vertebrates (fertility control, invasive species eradication, and pest species control to protect human health and agriculture), little progress has been made in applying RNAi to these classes of animals. A single proof-of-concept study using RNAi to control sea lampreys combined with recent advances in RNAi delivery have opened …

Avian Influenza A Virus Associations In Wild, Terrestrial Mammals: A Review Of Potential Synanthropic Vectors To Poultry Facilities, J. Jeffrey Root, Susan A. Shriner

United States Department of Agriculture Wildlife Services: Staff Publications

The potential role of wild mammals in the epidemiology of influenza A viruses (IAVs) at the farm-side level has gained increasing consideration over the past two decades. In some instances, select mammals may be more likely to visit riparian areas (both close and distant to farms) as well as poultry farms, as compared to traditional reservoir hosts, such as waterfowl. Of significance, many mammalian species can successfully replicate and shed multiple avian IAVs to high titers without prior virus adaptation and often can shed virus in greater quantities than synanthropic avian species. Within this review, we summarize and discuss the …

Improving The Accessibility And Transferability Of Machine Learning Algorithms For Identification Of Animals In Camera Trap Images: Mlwic2, Michael A. Tabak, Mohammad S. Norouzzadeh, David W. Wolfson, Erica J. Newton, Raoul K. Boughton, Jacob S. Ivan, Eric Odell, Eric S. Newkirk, Reesa Y. Conrey, Jennifer Stenglein, Fabiola Iannarilli, John Erb, Ryan K. Brook, Amy J. Davis, Jesse Lewis, Daniel P. Walsh, James C. Beasley, Kurt C. Vercauteren, Jeff Clune, Ryan S. Miller

United States Department of Agriculture Wildlife Services: Staff Publications

Motion-activated wildlife cameras (or “camera traps”) are frequently used to remotely and noninvasively observe animals. The vast number of images collected from camera trap projects has prompted some biologists to employ machine learning algorithms to automatically recognize species in these images, or at least filter-out images that do not contain animals. These approaches are often limited by model transferability, as a model trained to recognize species from one location might not work as well for the same species in different locations. Furthermore, these methods often require advanced computational skills, making them inaccessible to many biologists. We used 3 million camera …

Tissue Tropisms Of Avian Influenza A Viruses Affect Their Spillovers From Wild Birds To Pigs, Xiaojian Zhang, Fred L. Cunningham, Lei Li, Katie Hanson-Dorr, Liyuan Liu, Kaitlyn Waters, Minhui Guan, Alicia K. Olivier, Brandon S. Schmit, Jacqueline M. Nolting, Andrew S. Bowman, Mia Kim Torchetti, Thomas J. Deliberto, Xiu-Feng Wan

United States Department of Agriculture Wildlife Services: Staff Publications

Wild aquatic birds maintain a large, genetically diverse pool of influenza A viruses (IAVs), which can be transmitted to lower mammals and, ultimately, humans. Through phenotypic analyses of viral replication efficiency, only a small set of avian IAVs were found to replicate well in epithelial cells of the swine upper respiratory tract, and these viruses were shown to infect and cause virus shedding in pigs. Such a phenotypic trait of the viral replication efficiency appears to emerge randomly and is distributed among IAVs across multiple avian species and geographic and temporal orders. It is not determined by receptor binding preference …

Using Bioenergetics And Radar-Derived Bird Abundance To Assess The Impact Of A Blackbird Roost On Seasonal Sunflower Damage, Bonnie A. Clark, Page E. Klug, Phillip M. Stepanian, Jeffrey F. Kelly

United States Department of Agriculture Wildlife Services: Staff Publications

Methods aimed at reducing avian damage to agricultural crops are routinely implemented in situations where efficacy can be assessed by quantifying blackbird (Icteridae) abundance relative to environmental variables and extrapolating to ensuing crop damage. Concomitantly, Weather Surveillance Radar (WSR) data may have potential to enhance crop damage mitigation through improved monitoring of nuisance wildlife populations. We used WSR to derive daily abundance estimates of blackbirds at a fall roost in North Dakota, USA from 2012 to 2019. We integrated these estimates with previously developed bioenergeticseconomic models to estimate local sunflower (Helianthus annuus) damage. The greatest losses usually occurred during …

Historic And Contemporary Use Of Catfish Aquaculture By Piscivorous Birds In The Mississippi Delta, Paul C. Burr, Jimmy L. Avery, Garrett M. Street, Bronson K. Strickland, Brian S. Dorr

United States Department of Agriculture Wildlife Services: Staff Publications

Piscivorous birds are the primary source of catfish (Ictalurus spp.) depredation at aquaculture facilities in northwestern Mississippi. Of particular concern is the Double-crested Cormorant (Phalacrocorax auritus), which can cost aquaculture producers millions of dollars annually through the depredation of cultured fish. Historical research conducted in the early 2000s estimated cormorant use of aquaculture ponds in the region, but aquaculture area has decreased by more than 70% since those estimates were made. With less aquaculture available, we predicted cormorant densities on aquaculture would be greater today than historically. Applying a similar methodology as in historical studies, we used …

Invasive Species Control And Resolution Of Wildlife Damage Conflicts: A Framework For Chemical And Genetically Based Management Methods, Larry Clark, John Eisemann, John Godwin, Katherine Horak, Kevin Oh, Jeanette R. O'Hare, Antoinette J. Piaggio, Kim M. Pepin, Emily W. Ruell

United States Department of Agriculture Wildlife Services: Staff Publications

Vertebrate wildlife damage management relates to developing and employing methods to mitigate against damage caused by wildlife in the areas of food production, property damage, and animal or human health and safety. Of the many management tools available, chemical methods (e.g., toxicants) draw the most attention owing to issues related to environmental burden, species specificity, and humaneness. Research and development focusing on RNA interference and gene drives may be able to address the technical aspects of performance goals. However, there remain many questions about regulation, environmental risk, and societal acceptance for these emerging biological technologies. Here we focus on the …

Repellent Surface Applications For Pest Birds, Shelagh T. Deliberto, James C. Carlson, Hailey E. Mclean, Caroline S. Olson, Scott J. Werner

United States Department of Agriculture Wildlife Services: Staff Publications

Common pest birds in the United States include the non-native European starling (Sturnus vulgaris), house sparrow (Passer domesticus), and the pigeon (Columba livia domestica), as well as native birds including Canada geese (Branta canadensis) and gull species (Laridae). Large concentrations of pest birds can create human health hazards and monetary losses due to consumption of crops, depredation, and fecal contamination and accumulation. Fecal contamination hazards include the potential spread of zoonotic diseases including antimicrobial-resistant zoonoses and human injury due to the accumulation of fecal material on walking surfaces. Additionally, fecal accumulation causes …

Black Vulture Conflict And Management In The United States: Damage Trends, Management Overview, And Research Needs, Bryan M. Kluever, Morgan Pfeiffer, Scott C. Barras, Brett Dunlap, Lee A. Humberg

United States Department of Agriculture Wildlife Services: Staff Publications

Contrary to rapid declines of many vulture (Accipitridae, Cathartidea) species worldwide, black vulture (Coragyps atratus) populations are increasing and expanding their range in North America. Vultures exhibit complex behaviors and can adapt to any human-dominated landscape or land use. These traits, combined with population growth and range expansion, have contributed to increased human–vulture conflicts. Our goal was to summarize the current status and trends in human–black vulture conflicts (hereafter human– vulture conflicts), review available management strategies, identify knowledge gaps, and provide recommendations to enhance management and understanding of this species and the associated conflicts. We found human–vulture conflicts …

Review Of Ospreys: The Revival Of A Global Raptor, By Alan F. Poole. 2019., Lisa Fields, Brian E. Washburn

United States Department of Agriculture Wildlife Services: Staff Publications

For the past three decades, Alan Poole’s (1989) Ospreys: A Natural and Unnatural History has provided a solid foundation for those seeking a primer on the basic biology and ecology of Ospreys (Pandion haliaetus). Poole’s summary of knowledge about Ospreys was written at a time when these amazing birds were recovering from their DDTinduced population crash, but this important book has long been out of print. In the intervening decades, much has been learned regarding Ospreys. In his new book, Ospreys: The Revival of a Global Raptor, Poole guides the reader through a tour of Ospreys’ worldwide distribution and population …

Population Increases Of Large Birds In North America Pose Challenges For Aviation Safety, Richard A. Dolbeer

United States Department of Agriculture Wildlife Services: Staff Publications

There is a strong correlation between bird mass and the likelihood of aircraft damage during a bird–aircraft collision. Thus, the U.S. Federal Aviation Administration (FAA) has established airworthiness standards related to bird mass for engines, airframes, and windshields. Most standards use large (1.8 kg) and medium (1.1 kg) birds as benchmarks (the empennage and certain large turbofan engines use a 3.6-kg bird). There are 20 large (≥1.8 kg) and 16 medium (1.1–1.7 kg) bird species in North America with ≥20 strikes reported for civil aircraft (FAA National Wildlife Strike Database), 1990 to 2018. I analyzed the population changes of these …

Sediment Production And Delivery From Timber Harvest Roads In Humboldt County, California, Chris P. Faubion

Cal Poly Humboldt theses and projects

Sediment delivery from unpaved actively-used and relatively un-trafficked forest roads are one of the most common sources of impairment to aquatic ecosystems. Hence the objectives of this study were to: 1) compare the variability in erosion rates from actively used and relatively un-trafficked timber harvest roads across multiple water years in Railroad Gulch; 2) identify segment scale controls on road surface erosion and road-to-stream connectivity; 3) develop storm-based and annual segment scale models to predict road sediment production and compare the accuracy of these models to WEPP: Road; and 4) estimate road-related sediment loads to streams.

Between 2014 and 2019 …

Knowledge And Behavioural Interventions To Reduce Human Health Risk From Private Groundwater Systems: A Global Review And Pooled Analysis Based On Development Status, S. Mooney, C. P. Mcdowell, J. O'Dwyer, P. D. Hynds

Articles

Groundwater contamination constitutes a significant health risk for private well users residing in rural areas. As the responsibility to safeguard rural private domestic groundwater typically rests with non-expert homeowners, interventions promoting risk mitigation and awareness represent the most viable means of preventing supply contamination. However, no global review or pooled analyses of these interventions has been undertaken to date. The current study sought to identify and quantify the performance of private well interventions from 1990 to 2018 via a global systematised review and pooled analysis. The PICO (Population-Intervention-Comparison-Outcome) approach was employed for literature identification. Relevant studies were statistically analysed across …

Winter Use Of A Rock Crevice By Northern Long-Eared Myotis (Myotis Septentrionalis) In Nebraska, Jeremy A. White, Patricia Freeman, Hans W. Otto, Cliff Lemen

School of Natural Resources: Faculty Publications

We used a combination of acoustic detectors, thermal imaging cameras, and mist netting to confirm the use of a rock crevice by northern long-eared myotis (Myotis septentrionalis) in winter in northeastern Nebraska. Bats roosted in a large crevice in a rock face along the Missouri River, and 5 individuals were captured emerging from the opening of the crevice in March 2017. Our study is the first to confirm the use of a rock-crevice hibernaculum by M. septentrionalis and adds to the growing literature on the winter use of rock crevices by hibernating bats in North America. As white-nose …

The Role Of Topography, Soil, And Remotely Sensed Vegetation Condition Towards Predicting Crop Yield, Trenton E. Franz, Sayli Pokal, Justin P. Gibson, Yuzhen Zhou, Hamed Gholizadeh, Fatima Amor Tenorio, Daran Rudnick, Derek M. Heeren, Matthew F. Mccabe, Matteo Ziliani, Zhenong Jin, Kaiyu Guan, Ming Pan, John Gates, Brian Wardlow

School of Natural Resources: Faculty Publications

Foreknowledge of the spatiotemporal drivers of crop yield would provide a valuable source of information to optimize on-farm inputs and maximize profitability. In recent years, an abundance of spatial data providing information on soils, topography, and vegetation condition have become available from both proximal and remote sensing platforms. Given the wide range of data costs (between USD $0−50/ha), it is important to understand where often limited financial resources should be directed to optimize field production. Two key questions arise. First, will these data actually aid in better fine-resolution yield prediction to help optimize crop management and farm economics? Second, what …

Growing Season Air Mass Equivalent Temperature (Te) In The East Central Usa, Dolly Na-Yemeh, Rezaul Mamood, Gregory Goodrich, Keri Younger, Kevin Cary, Joshua D. Durkee

School of Natural Resources: Faculty Publications

Equivalent temperature (TE), which incorporates both dry (surface air temperature, T) and moist heat content associated with atmospheric moisture, is a better indicator of overall atmospheric heat content compared to T alone. This paper investigates the impacts of different types of air masses on TE during the growing season (April–September). The study used data from the Kentucky Mesonet for this purpose. The growing season was divided into early (April–May), mid (June–July), and late (August–September). Analysis suggests that TE for moist tropical (MT) air mass was as high as 61 and 81 C for the early and mid-growing season, respectively. Further …

Habitat Use And Prey Selection By Mountain Lions In An Altered Sagebrush Steppe Environment, Jonathan Ewanyk

Cal Poly Humboldt theses and projects

Throughout the American West there is an increasing trend of encroachment of woody vegetation on previously open sagebrush steppe habitat. The Modoc Plateau in northeastern California has not been excluded from this encroachment trend and has seen an increase in western juniper (Juniperus occidentalis) densities, likely as a result of long-term fire suppression. Mountain lions (Puma concolor) have not previously been studied on the Modoc Plateau, and there is potential for an increase in cover due to juniper encroachment to benefit the hunting behavior of lions. To better understand if the presence of cover is being …

Species Distribution Models For Three Deep-Sea Coral And Sponge Taxa In The Southern California Bight, Nissa Kreidler

Cal Poly Humboldt theses and projects

Deep-Sea Coral and Sponge (DSCS) species are signature taxa of deep-water habitats, however understanding the ecological mechanisms that drive their geographic distributions can be difficult to uncover due to the challenges of surveying deep-water ecosystems. A recent study on benthic assemblages in Southern California revealed statistical associations between several DSCS and demersal fishes, many of which are important to management agencies due to commercial or conservation concerns. Maps that predict where these DSCS may occur are needed for the management and protection of these DSCS taxa and the fauna that rely on them for habitat. In this thesis, I develop …

Estimates Of Red Drum Mortality Via Acoustic Telemetry, T. Reid Nelson, Sean P. Powers

University Faculty and Staff Publications

Subadult (age < 3) Red Drum Sciaenops ocellatus support a valuable recreational fishery, and mortality estimates for young Red Drum are needed for proper management. To obtain these estimates, age-1 and age-2 Red Drum were implanted with acoustic transmitters and external Floy tags in two coastal Alabama rivers (Fowl and Dog rivers). Fates of tagged fish were inferred from stationary receiver detections and active relocations over 1 year. These fates were used in a Bayesian multistate model to estimate instantaneous monthly and annual mortality and emigration rates for each river and overall from both rivers. Instantaneous monthly fishing mortality (F) ranged from 0.001 to 0.112 (annual F = 0.414) in Dog River, from 0.001 to 0.126 in Fowl River (annual F = 0.309), and was 0.001–0.054 (annual F = 0.337) overall. Instantaneous monthly natural mortality (M) ranged from 0.001 to 0.002 (annual M= 0.069) in Dog River, from 0.001 to 0.036 (annual M= 0.178) in Fowl River, and from 0.001 to 0.017 (annual M= 0.090) overall. The overall annual estimate of instantaneous total mortality (Z) was 0.435. The median escapement percentage was estimated at 36.3% (95% posterior credible interval = 19.5–56.0%) using M and Z from the overall model. Unfortunately, the error on this estimate was large and inconclusive as to whether the 30% escapement goal for juvenile Red Drum to the adult population from Dog and Fowl rivers is being met. Monthly residency estimates were typically greater than 0.90, and overall annual residency was estimated at 0.716. Fishing mortality estimates from the current study are higher than recent catch curve estimates that did not include young Red Drum. These results demonstrate that young Red Drum need to be accounted for when generating mortality estimates and provide needed data for the Red Drum recreational fishery.

Habitat Associations And Co-Occurrence Patterns Of Two Estuarine-Dependent Predatory Fishes, Mariah C. Livernois, Sean P. Powers, Mark A. Albins, John F. Mareska

University Faculty and Staff Publications

Estuarine-dependent fishes experience a wide range of environmental conditions, and most species exhibit distinct associations with particular habitats. However, similar species or multiple conspecifics often overlap spatiotemporally, which can result in ecological interactions that have consequences for behaviors that can shape the structure and function of ecosystems. We used a long-term gill-net data set (2001–2015) to investigate the habitat associations and cooccurrence patterns of two estuarine-dependent predatory fishes, Red Drum Sciaenops ocellatus and Spotted Seatrout Cynoscion nebulosus, in coastal Alabama, USA. Both species were associated with similar environmental conditions, primarily low dissolved oxygen and low salinity, especially when temperature was …

The Vezo Communities And Fisheries Of The Coral Reef Ecosystem In The Bay Of Ranobe, Madagascar, Shane Abeare

LSU New Orleans Theses and Dissertations

Madagascar, a country whose extraordinary levels of endemism and biodiversity are celebrated globally by scientists and laymen alike, yet historically has received surprisingly little research attention, is the setting of the present dissertation. Here, I contribute to the need for applied research by: 1) focusing on the most intensely fished section of the Toliara Barrier Reef, the Bay of Ranobe; 2) characterizing the marine environment, the human population, and the fisheries; and 3) collecting the longest known time-series of data on fisheries of Madagascar, thereby providing a useful baseline for future analyses. In Chapter 1, the bathymetry of the Bay …

Green Strategic Planning Approach For International Shipping Activities, Xiaofang Wu, Luoping Zhang, Huan Feng

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

Sustainability is a long-term and ultimate goal for international shipping, although it is slowly making progress. The shipping perspective that moves away from “port-to-port” operations to “door-to-door” services also requires international shipping to take a long-term and holistic view instead of fragmented efforts. How to achieve the long-term sustainability goal becomes a key issue for door-to-door international shipping. Hence, green strategic planning for door-to-door international shipping was proposed with green development that puts forward the eco-centric point of view as its basic theory for sustainability. This study used a strategic decision-making approach, a so-called multi-dimensional decision-making (MDDM), coupled with the …

A Model For The Prediction Of Antimicrobial Resistance In Escherichia Coli Based On A Comparative Evaluation Of Fatty Acid Profiles, Randal S. Stahl, Bledar Bisha, Sebabrata Mahapatra, Jeffrey C. Chandler

United States Department of Agriculture Wildlife Services: Staff Publications

Antimicrobial resistance is a threat to agricultural production and public health. In this proof-of-concept study, we investigated predicting antimicrobial sensitive/resistant (S/R) phenotypes and host sources of Escherichia coli (n = 128) based on differential fatty acid abundance. Myristic (14:0), pentadecanoic acid (15:0), palmitic (16:0), elaidic (18:19) and steric acid (18:0) were significantly different (α = 0.05) using a two-way ANOVA for predicting nalidixic acid, ciprofloxacin, aztreonam, cefatoxime, and ceftazidime S/R phenotypes. Additionally, analyses of palmitoleic (16:1), palmitic acid (16:0), methyl palmitate (i-17:0), and cis-9,10-methyleneoctadecanoic acid (19:0Δ) showed these markers were significantly different (α = 0.05) between isolates obtained from cattle …

On The Frontlines - The Fishermen Of Ibrahim Hyderi, Muhammad Haris Aslam Khan

MSJ Capstone Projects

Climate change has become a matter of recent debate for much of the world. According to a report published by a German watch, a non-governmental organization, in 2019, Pakistan among the five countries at severe risk of climate change disasters.

During the last two decades, Pakistan saw more than 141 extreme climatic catastrophes. Only in 2016, more than 566 people died due to these conditions.

A report published by Asian Development Bank in 2017 indicates Pakistan’s climate change profile. It states that more than 1,600 people have lost their lives in the super flood of 2010 alone. A loss of …

Resolving Time-Space Histories Of Late Cenozoic Bedrock Incision Along The Upper Colorado River, Usa, Andres Aslan, Karl E. Karlstrom, Eric Kirby, Matthew T. Heizler, Darryl E. Granger, James K. Feathers, Paul R. Hanson, Shannon A. Mahan

School of Natural Resources: Faculty Publications

The upper Colorado River basin drains the western slope of the Rocky Mountains province of North America and hosts a rich record of fluvial terraces and volcanic deposits that provide an archive of bedrock river incision since the Late Miocene. Here we present new geochronology from fluvial deposits and associated volcanic units using multiple methods (luminescence, cosmogenic-burial, 40Ar/39Ar basalt and detrital sanidine, and U/Pb detrital zircon) to reconstruct a detailed record of bedrock incision in the upper Colorado River over timescales ranging from Miocene to Late Pleistocene. Late Miocene (ca. 11–8 Ma) basalt flows perched 800–1700 m above the Colorado …

Improving Aquifer Characterization Through Integration Of Airborne Electromagnetics (Aem) And Well Hydrographs, Jacqueline Polashek

School of Natural Resources: Dissertations, Theses, and Student Research

The objective of this study is to evaluate methods of hydrostratigraphic modeling using geophysics and well hydrographs at the eastern edge of the High Plains aquifer (HPA) in Platte and Colfax counties within Nebraska, USA. The HPA is very heterogeneous in the study area, being hosted by architecturally complex glacial sediments and having many irregular hydraulic boundaries. Further, the HPA exhibits local variations between unconfined and confined conditions. Pumping in such bounded aquifers can be unsustainable because of cost increases and lost agricultural productivity. Moreover, the large drawdowns typical of confined aquifers can contribute to well interference during heavy pumping. …

Modeling Elementary Students’ Ideas About Heredity: A Comparison Of Curricular Interventions, Cory Forbes, Dante Cisterna, Devarati Bhattacharya, Ranu Roy

School of Natural Resources: Faculty Publications

Learning about heredity is important across the K–12 continuum. However, these ideas may be challenging for students. We examined third-grade students’ ideas about heredity in the context of a new, six-week, model-based science unit that uses corn as a model organism to support students’ ideas about heredity. We analyzed data collected during implementation of the unit, including student artifacts and interviews. We compared these data to those from a pilot version of the curriculum – implemented in the prior year – that was focused on the same disciplinary concepts but was not designed around scientific modeling. Our findings illustrate levels …

Small Ruminant Health Intervention Calendar In Ethiopia, Mesfin Mekonnen, Ayalew Assefa, Tesfalem Nane, Firdawok Ayele, Asrat Arke, Belay Elias, Barbara Wieland

Daugherty Water for Food Global Institute: Faculty Publications

Contents

1 Background................................................................................................... 3
2 Developing the health intervention calendar............................................................ 4
The treatment calendar ......................................................... 4 Applying the calendar..................................................................... 5 4 References................................................................... 8

Modeling Waterfowl Hunter And Ducks Unlimited Member Behavior Using Mark–Recapture Methods, Katherine Graham

School of Natural Resources: Dissertations, Theses, and Student Research

The number of individuals actively participating in waterfowl hunting has substantially declined since the 1980s, despite relatively abundant waterfowl populations and hunting opportunities. To avoid further losses in political support for wildlife management, losses in habitat conservation revenue, and broaden the base of waterfowl and wetland conservation support, there has been an increased focus on growing the number of waterfowl hunters and waterfowl and wetland conservation supporters. The purpose of this study was to estimate resident waterfowl hunter and Ducks Unlimited (DU) member recruitment rates, retention probabilities, and license/membership purchase probabilities; provide a better understanding of the factors influencing these …

Assessing & Protecting Dark Night Skies In El Morro National Monument, Leslie Kobinsky

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Light pollution is causing the disappearance of dark night skies around the world. In the United States alone, 1/3 of people are unable to see the Milky Way where they live (Ramlagan, 2016). National Park Service sites contain some of the darkest skies in the country. Here at El Morro National Monument, these dark skies are a beautiful and healthy benefit to people in the local community and visitors traveling from afar. El Morro’s current park legislation does not include specific measures of protection for the night sky. This capstone project will create a baseline data set of night sky …