Biogeochemistry Commons^™

Water And Energy Balance Response Of A Riparian Wetland To The Removal Of Phragmites Australis, Phillip Mykleby

Department of Earth and Atmospheric Sciences: Dissertations, Theses, and Student Research

Vegetation and climate both play integral roles in water availability, particularly for arid to semi-arid regions. Changes in these variables can lead to extreme shortages in water for regions that rely on water for crop irrigation (i.e., the Great Plains). The objective of this study is to evaluate the impacts of vegetation on water availability in the Republican River basin in central Nebraska. Decreases in streamflow have been observed in the river basin for many years and, as a result, an invasive riparian plant species (Phragmites australis) is being removed in an effort to reduce evapotranspiration and reclaim …

Chemical And Isotopic Evaluation Of Sulfur Sources And Cycling In The Pecos River, New Mexico, Usa, Fasong Yuan, Bernhard Mayer

Biological, Geological, and Environmental Faculty Publications

The use of stable isotopes in studies of watershed biogeochemical processes has increased greatly throughout the last several decades. Much of the sulfur cycling research has addressed the influence of changes in atmospheric acid deposition on sulfur dynamics in temperate ecosystems. Little is known about sulfur cycling in dryland ecosystems such as those in the American Southwest. To identify the sources and assess the cycling of sulfur in dryland ecosystems, chemical and isotopic compositions of water were measured on samples collected from the Pecos River (New Mexico, USA) during a reconnaissance survey in spring 2010. Based on the chemical and …

Diversity, Distribution, And Expression Of Diazotroph Nifh Genes In Oxygen-Deficient Waters Of The Arabian Sea, Amal Jayakumar, Mamoon M. D. Al-Rshadat, Bess B. Ward, Margaret R. Mulholland

OES Faculty Publications

The Arabian Sea oxygen minimum zone (OMZ), the largest suboxic region in the world's oceans, is responsible for up to half of the global mesopelagic fixed nitrogen ( N ) loss from the ocean via denitrification and anammox. Dinitrogen (N₂) fixation is usually attributed to cyanobacteria in the surface ocean. Model prediction and physiological inhibition of N₂ fixation by oxygen, however, suggest that N₂ fixation should be enhanced near the oxygen-deficient zone (ODZ) of the Arabian Sea. N₂ fixation and cyanobacterial nifH genes (the gene encoding dinitrogenase reductase) have been reported in surface waters overlying …

Controls On Dissolved Cobalt In Surface Waters Of The Sargasso Sea: Comparisons With Iron And Aluminum, R. U. Shelley, Peter N. Sedwick, T. S. Bibby, P. Cabedo-Sanz, T. M. Church, R. J. Johnson, A. I. Macey, C. M. Marsay, E. R. Sholkovitz, S. J. Ussher, P. J. Worsfold, M. C. Lohan

OES Faculty Publications

Dissolved cobalt (dCo), iron (dFe) and aluminum (dAl) were determined in water column samples along a meridional transect (∼31°N to 24°N) south of Bermuda in June 2008. A general north-to-south increase in surface concentrations of dFe (0.3-1.6 nM) and dAl (14-42 nM) was observed, suggesting that aerosol deposition is a significant source of dFe and dAl, whereas no clear trend was observed. for near-surface dCo concentrations. Shipboard aerosol samples indicate fractional solubility values of 8-100% for aerosol Co, which are significantly higher than corresponding estimates of the solubility of aerosol Fe (0.44-45%). Hydrographic observations and analysis of time series rain …

Implications Of Decade Time Scale Arctic Plant Community Change On Ecosystem Function, Mark Jason Lara

Open Access Theses & Dissertations

Almost half the global soil organic carbon pool is found in northern high latitudes. The majority of this soil carbon is stored in a greenhouse inert state within permafrost. As pronounced warming of high northern latitudes ensues, there is a strong likelihood that this substantial soil organic carbon pool will be mobilized to the atmosphere where it is likely to positively enhance greenhouse warming. Modeling studies suggest this positive feedback could alter future climate states of the Arctic and the globe, and affect how humans may need to adapt to climate change. Accordingly, understanding the patterns and controls and the …

The Impact Of Decadal Land Cover Change On The Global Warming Potential Of Beringian Arctic Tundra, David Hwei-Len Lin

Open Access Theses & Dissertations

Arctic terrestrial ecosystems play an important role in the global carbon cycle. If arctic warming continues to rise as projected, large amounts of soil carbon stored in these ecosystems could be released to the atmosphere as carbon dioxide or methane and positively enhance greenhouse warming. Thus, improving understanding of the likely future state and fate of arctic soil carbon, and the carbon uptake potential of arctic terrestrial ecosystems are well recognized research priorities.

At the pan-arctic scale, decadal increases in NDVI (Normalized Difference Vegetation Index), an index of vegetation productivity, have been observed from satellite imagery, indicating a general greening …

Variability In Hydrology And Ecosystem Properties And Their Role In Regulating Soil Organic Matter Stability In Wetlands Of West-Central Florida, Sharon Jean Feit

USF Tampa Graduate Theses and Dissertations

Soil organic matter (SOM) provides many ecosystem services that are necessary for continued ecosystem function. The accumulation of SOM in an ecosystem is a function of its persistence time which can range from days to thousands of years. Ecosystem properties including dominant vegetation type, soil texture, and soil moisture in various habitats can regulate the persistence time of SOM.

Wetlands, because of their associated ecosystem properties, promote SOM accumulation, but little has been done to determine the ecosystem properties that regulate its persistence over time. In west-central Florida, urbanization and increased water demands have suppressed water tables in isolated wetland …

Biological Effects On Serpentinite Weathering, Mary H. Evert, Julie Baumeister, Elisabeth Hausrath

Undergraduate Research Opportunities Program (UROP)

Serpentinites, perhaps more than any other rock type, control the composition and evolution of the development of the surrounding ecosystems. The bulk chemistry of serpentinite rocks, high in Mg and trace elements, and low in nutrients such as Ca, K, P, and N, causes an extreme and stressful environment for ecosystems. However, the role that those serpentine ecosystems play in development of serpentine soils has not been examined.

Due to the unusual chemistry of serpentine soils, serpentine ecosystems have deeper and better-developed root systems than other ecosystems. The rhizosphere of serpentine systems, documented to produce abundant organic acids and siderophores, …

Iron Oxide And Calcite Associated With Leptothrix Sp. Biofilms Within An Estavelle In The Upper Floridan Aquifer, Lee J. Florea, Chasity L. Stinson, Josh Brewer, Rick Fowler, B Joe Kearns, Anthony M. Greco

International Journal of Speleology

In Thornton’s Cave, an estavelle in west-central Florida, SEM, EDS, and XRD data reveal biofilms that are predominantly comprised of FeOOH-encrusted hollow sheaths that are overgrown and intercalated with calcite. Fragments of this crystalline biofilm adhere to the walls and ceiling as water levels vary within the cave. Those on the wall have a ‘cornflake’ appearance and those affixed to the ceiling hang as fibrous membranes. PCR of DNA in the active biofilm, combined with morphologic data from the tubes in SEM micrographs, point to Leptothrix sp., a common Fe-oxidizing bacteria, as the primary organism in the biofilm. Recent discoveries …

Phosphorus Uptake In Rhodomonas Salina (Wislouch) And Its Effect On Allocation And Elimination In Acartia Tonsa (Dana), Danna Palladino

OES Theses and Dissertations

Phosphorus is a key element in important biochemical compounds, such as RNA and phospholipids, and can become limiting in a variety of marine systems. The uptake of phosphorus into biochemical fractions (protein, low molecular weight (LMW) compounds, lipid, polysaccharide and nucleic acid) in Acartia tonsa fed ³³P -labeled Rhodomonas salina was examined. R. salina was cultured on two variations of one media that in one case contained phosphorus in balance and the other out of balance with relation to other standard f/2 components. The P-balanced (PB) media had a N:P ratio of 24.5, which is higher than that found …

Virus Silicification Under Simulated Hot Spring Conditions, James R. Laidler, Kenneth M. Stedman

Biology Faculty Publications and Presentations

Silicification of organisms in silica-depositing environments can impact both their ecology and their presence in the fossil record. Although microbes have been silicified under laboratory and environmental conditions, viruses have not. Bacteriophage T4 was successfully silicified under laboratory conditions that closely simulated those found in silica-depositing hot springs. Virus morphology was maintained, and a clear elemental signature of phosphorus was detected by energy-dispersive X-ray spectrophotometry (EDS).

Cellulosic Ethanol: The Benefits, Obstacles, And Implications For Nebraska, Cassidee Lin Thompson

Department of Environmental Studies: Undergraduate Student Theses

Abstract Ethanol is a biofuel that has unique capabilities to mitigate global climate change by reducing greenhouse gas emissions while simultaneously supporting rural economies and decreasing the United States’ dependence on foreign oil. Currently, the state of Nebraska depends on corn ethanol, which may be unsustainable. Cellulosic ethanol is a promising alternative but it is not without its problems, including high production costs and potential environmental damage. This thesis is an attempt to understand the benefits, downfalls, and processes of corn-based and cellulosic ethanol and the potential implications to Nebraska. This research should shed some light on the current obstacles …

A Seasonal Study Of Dissolved Cobalt In The Ross Sea, Antarctica: Micronutrient Behavior, Absence Of Scavenging, And Relationships With Zd, Cd, And P., M. A. Saito, T. J. Goepfert, A. E. Noble, E. M. Bertrand, Peter N. Sedwick, Giacomo R. Ditullio

OES Faculty Publications

We report the distribution of cobalt (Co) in the Ross Sea polynya during austral summer 2005-2006 and the following austral spring 2006. The vertical distribution of total dissolved Co (dCo) was similar to soluble reactive phosphate (PO(4)(3-)), with dCo and PO(4)(3-) showing a significant correlation throughout the water column (r(2) = 0.87, 164 samples). A strong seasonal signal for dCo was observed, with most spring samples having concentrations ranging from similar to ~ 45-85 pM, whereas summer dCo values were depleted below these levels by biological activity. Surface transect data from the summer cruise revealed concentrations at the low range …

Copper Isotope Fractionation During Surface Adsorption And Intracellular Incorporation By Bacteria, Jesica Urbina Navarrete

Open Access Theses & Dissertations

Copper isotopes may prove to be a useful tool for investigating bacteria-metal interactions recorded in natural waters, soils, and rocks. However, experimental data that constrain Cu isotope fractionation in biologic systems are limited and unclear. In this study we utilized Cu isotopes (65Cu) as a tool to investigate Cu-bacteria interactions, including surface adsorption and intracellular incorporation. Experiments were conducted with individual Gram-positive (Bacillus subtilis) and Gram-negative (Escherichia coli) bacterial species as well as with bacterial consortia from several natural environments. Adsorption experiments were conducted with live or dead cells over the pH range 2.5 to 6. Surface adsorption of Cu …

Are “Quantitative” Pits Still Necessary At Hubbard Brook?, Chris E. Johnson

Civil and Environmental Engineering - All Scholarship

No abstract provided.

Biogeochemical Behavior Of Dissolved Arsenic And Uranium Concentrations In Public Water Supply Wells, Kevin J. Mcvey

School of Natural Resources: Dissertations, Theses, and Student Research

Public water supply (PWS) wells currently contain dissolved uranium concentrations above the federally mandated maximum contaminant level (MCL) of 30 ppb (parts per billion) and dissolved arsenic concentrations above the 10 ppb MCL. Both uranium and arsenic are known to cause various forms of cancer in humans. Variations in total uranium concentrations in PWS wells in Nebraska indicate a relationship to the duration and rate of pumping in specific wells. Although total arsenic concentrations show some variability over time in specific wells, the relationship to pumping is not as clear. Previous studies show that iron and sulfur bacteria present in …

A Bio-Optical Model For Syringodium Filiforme Canopies, Margaret A. Stoughton

OES Theses and Dissertations

Seagrasses are significant ecological and biogeochemical agents in shallow water ecosystems throughout the world. In many regions, seagrass meadows occupy a sufficient fraction of the coastal zone, and generate optical signatures that can be observed from space. Bio-optical models of light absorption and scattering by submerged plant canopies for certain species such as Thalassia testudinum and Zostera marina have successfully modeled the plane irradiance distribution and photosynthesis within the submerged canopies. Syringodium filiforme differs &om T. testudinttm and Z marina, in leaf morphology and canopy architecture. The objective of this study was to develop a radiative transfer model that …

Optics And Remote Sensing Of Bahamian Carbonate Sediment Whitings And Potential Relationship To Wind-Driven Langmuir Circulation, H. M. Dierssen, Richard C. Zimmerman, David J. Burdige

OES Faculty Publications

Regions of milky white seas or "whitings" periodically occur to the west of Andros Island along the Great Bahama Bank where the bottom sediment consists of fine-grained aragonite mud. We present measurements of inherent optical properties within a sediment whiting patch and discuss the potential for monitoring the frequency, extent, and quantity of suspended matter from ocean colour satellite imagery. Sea spectral reflectance measured in situ and remotely from space revealed highly reflective waters elevated across the visible spectrum (i.e., "whitened") with a peak at 490 nm. Particulate backscattering was an order of magnitude higher than that measured at other …

Synergistic Effects Of Iron And Temperature On Antarctic Phytoplankton And Microzooplankton Assemblages, J. M. Rose, Y. Feng, G. R. Ditullio, R. B. Dunbar, C. E. Hare, P. A. Lee, M. Lohan, M. Long, W. O. Smith Jr., B. Sohst, S. Tozzi, Y. Zhang, D. A. Hutchins

OES Faculty Publications

Iron availability and temperature are important limiting factors for the biota in many areas of the world ocean, and both have been predicted to change in future climate scenarios. However, the impacts of combined changes in these two key factors on microbial trophic dynamics and nutrient cycling are unknown. We examined the relative effects of iron addition (+1 nM) and increased temperature (+4° C) on plankton assemblages of the Ross Sea, Antarctica, a region characterized by annual algal blooms and an active microbial community. Increased iron and temperature individually had consistently significant but relatively minor positive effects on total phytoplankton …

Pdi, Reactive Oxygen Species Stress And Polyphenolic Phytochemicals: Implications For Neurodegenerative Diseases, Rituraj Pal

Open Access Theses & Dissertations

PDI, protein disulfide isomerase, is one of the most versatile proteins and highly expressed in mammalian cells because there is a vast number of proteins that must undergo processing before secretion to their final destinations. PDI has several functions: oxidation of nascent proteins and isomerization of existing disulfide bonds. It also possesses chaperone activity and participates in protein degradation. Because of its structure, PDI can exist in a reduced or oxidized form. In mammalian cells it is mostly reduced due to the high demand of disulfide bond shuffling of secreted proteins within the ER, PDI a, a', and b' posses …

Fish Distributions And Nutrient Cycling In Streams: Can Fish Create Biogeochemical Hotspots, Peter B. Mcintyre, Alexander S. Flecker, Michael J. Vanni, James M. Hood, Brad W. Taylor, Steven A. Thomas

Dartmouth Scholarship

Rates of biogeochemical processes often vary widely in space and time, and characterizing this variation is critical for understanding ecosystem functioning. In streams, spatial hotspots of nutrient transformations are generally attributed to physical and microbial processes. Here we examine the potential for heterogeneous distributions of fish to generate hotspots of nutrient recycling. We measured nitrogen (N) and phosphorus (P) excretion rates of 47 species of fish in an N-limited Neotropical stream, and we combined these data with population densities in each of 49 stream channel units to estimate unit- and reach-scale nutrient recycling. Species varied widely in rates of N …

A Watershed Analysis Of Pattee Pond: Implications For Water Quality And Land Use Management, Problems In Environmental Science Course (Biology 493), Colby College, Colby Environmental Assessment Team, Colby College

Colby College Watershed Study: Pattee Pond (2008, 1992)

The Colby Environmental Assessment Team (CEAT) investigated the impact of land use patterns on the water quality of Pattee Pond in Winslow, Maine, during the summer and fall of 2008. Physical, chemical, and biological characteristics of water quality were analyzed to evaluate the current health of the lake. Data collected were compared with previous studies conducted by the Maine Department of Environmental Protection (DEP) and CEAT to examine changes in water quality and land use over time. Trends in Pattee Pond water quality suggest an improvement since the 1970s. However, the lake is still experiencing algal blooms resulting from phosphorus …

From Debate To Design: Issues In Clean Energy And Climate Change Law And Policy, Leslie Parker, Jennifer Ronk, Rachel Maxwell, Bradford Gentry, Marijn Wilder, James Cameron

Yale School of the Environment Publications Series

A report on the work of the REIL Network 2007-2008

Radiocarbon Evidence For The Importance Of Surface Vegetation On Fermentation And Methanogenesis In Contrasting Types Of Boreal Peatlands, J. P. Chanton, P. H. Glaser, L. S. Chasar, David J. Burdige, M. E. Hines, D. I. Seigel, L. B. Tremblay, W. T. Cooper

OES Faculty Publications

We found a consistent distribution pattern for radiocarbon in dissolved organic carbon (DOC), dissolved inorganic carbon (DIC), and methane replicated across spatial and temporal scales in northern peatlands from Minnesota to Alaska. The ¹⁴C content of DOC is relatively modern throughout the peat column, to depths of 3 m. In sedge-dominated peatlands, the ¹⁴C contents of the products of respiration, CH₄ and DIC, are essentially the same and are similar to that of DOC. In Sphagnum- and woody plant-dominated peatlands with few sedges, however, the respiration products are similar but intermediate between the ¹⁴C contents of …

Co2 Sensitivity Of Southern Ocean Phytoplankton, Philippe D. Tortell, Christopher D. Payne, Yingyu Li, Scarlett Trimborn, Bjorn Rost, Walker O. Smith, Christina Riesselman, Robert B. Dunbar, Peter Sedwick, Giacomo R. Ditullio

OES Faculty Publications

The Southern Ocean exerts a strong impact on marine biogeochemical cycles and global air-sea CO₂ fluxes. Over the coming century, large increases in surface ocean CO₂ levels, combined with increased upper water column temps. and stratification, are expected to diminish Southern Ocean CO₂ uptake. These effects could be significantly modulated by concomitant CO₂-dependent changes in the region's biol. carbon pump. Here we show that CO₂ concentrations affect the physiology, growth and species composition. of phytoplankton assemblages in the Ross Sea, Antarctica. Field results from in situ sampling and ship-board incubation experiments demonstrate that inorganic …

Interactions Between Changing Pco2, N2 Fixation, And Fe Limitation In The Marine Unicellular Cyanobacterium Crocosphaera, Fei-Xue Fu, Margaret R. Mulholland, Nathan S. Garcia, Aaron Beck, Mark E. Warner, Sergio A. Sañudo, David A. Hutchins

OES Faculty Publications

We examined the physiological responses of steady-state iron (Fe)-replete and Fe-limited cultures of the biogeochemically critical marine unicellular diazotrophic cyanobacterium Crocosphaera at glacial (19 Pa; 190 ppm), current (39 Pa; 380 ppm), and projected year 2100 (76 Pa; 750 ppm) CO₂ levels. Rates of N₂ and CO₂ fixation and growth increased in step with increasing partial pressure of CO₂ (pCO₂), but only under Fe- replete conditions. N₂) and carbon fixation rates at 75 Pa CO₂ were 1.4-1.8-fold and 1.2-2.0-fold higher, respectively, relative to those at present day and glacial pCO_{2 …}

Environmental Controls On The Landscape-Scale Biogeography Of Stream Bacterial Communities, Noah Fierer, Jennifer L. Morse, Sean T. Berthrong, Emily S. Bernhardt, Robert B. Jackson

Environmental Science and Management Faculty Publications and Presentations

We determined the biogeographical distributions of stream bacteria and the biogeochemical factors that best explained heterogeneity for 23 locations within the Hubbard Brook watershed, a 3000-ha forested watershed in New Hampshire, USA. Our goal was to assess the factor, or set of factors, responsible for generating the biogeographical patterns exhibited by microorganisms at the landscape scale. We used DNA fingerprinting to characterize bacteria inhabiting fine benthic organic matter (FBOM) because of their important influence on stream nutrient dynamics. Across the watershed, streams of similar pH had similar FBOM bacterial communities. Streamwater pH was the single variable most strongly correlated with …

Effects Of Elevated Atmospheric Co2 On Root Dynamics, Biomass And Architecture In A Scrub-Oak Ecosystem At Kennedy Space Center, Florida, Daniel Benjamin Stover

Biological Sciences Theses & Dissertations

A major gap in whole-plant ecology lies with our understanding of root system growth, function and distribution. Large belowground structures, in addition to fine roots, are of particular interest because of their role in carbon sequestration. Non-destructive methods, including ground-penetrating radar (GPR) and minirhizotron observation tubes, were used to investigate effects of elevated CO₂ on root biomass, dynamics (productivity, mortality, and turnover), root persistence and architecture in a fire dominated scrub-oak ecosystem. Open-top chambers have been exposed to elevated atmospheric CO₂ for the past eleven years at Kennedy Space Center, Florida. No significant sustained CO₂ treatment effects …

Plant Assemblage Structure On Barrier Island ‘Pimple’ Dunes At The Virginia Coast Reserve Long-Term Ecological Research Site, Brett A. Mcmillan

Biological Sciences Theses & Dissertations

The habitats at the VCR LTER that were the focus of the current study are the Hog Island and Parramore Island 'pimples', small, rounded dunes forming along main dune ridges of the barrier islands. There are distinct plant assemblage zones found on pimples, although most of these dunes are 10–20 m in diameter. Hypotheses of the study were that fresh water availability was a main determinant of differences between assemblages and that pimple size and location would influence diversity and assemblage structure. Research goals were (1) to describe the plant assemblages on pimples, (2) to relate edaphic and geomorphological factors …

Co2 Control Of Trichodesmium N-2 Fixation, Photosynthesis, Growth Rates, And Elemental Ratios: Implications For Past, Present, And Future Ocean Biogeochemistry, D. A. Hutchins, F.-X. Fu, Y. Zhang, M. E. Warner, Y. Feng, K. Portune, P. W. Bernhardt, M. R. Mulholland

OES Faculty Publications

Diazotrophic marine cyanobacteria in the genus Trichodesmium contribute a large fraction of the new nitrogen entering the oligotrophic oceans, but little is known about how they respond to shifts in global change variables such as carbon dioxide (CO₂) and temperature. We compared Trichodesmium dinitrogen (N₂) and CO₂ fixation rates during steady-state growth under past, current, and future CO₂ scenarios, and at two relevant temperatures. At projected CO₂ levels of year 2100 (76 Pa, 750 ppm), N₂ fixation rates of Pacific and Atlantic isolates increased 35-100%, and CO₂ fixation rates increased 15-128% …