Software Engineering Commons^™

Soda: An Open-Source Library For Visualizing Biological Sequence Annotation, Jack W. Roddy, Travis J. Wheeler

Graduate Student Theses, Dissertations, & Professional Papers

Genome annotation is the process of identifying and labeling known genetic sequences or features within a genome. Across the various subfields within modern molecular biology, there is a common need for the visualization of such annotations. Genomic data is often visualized on web browser platforms, providing users with easy access to visualization tools without the need for installing any software or, in many cases, underlying datasets. While there exists a broad range of web-based visualization tools, there is, to my knowledge, no lightweight, modern library tailored towards the visualization of genomic data. Instead, developers charged with the task of producing …

Privattnet: Predicting Privacy Risks In Images Using Visual Attention, Zhang Chen, Thivya Kandappu, Vigneshwaran Subbaraju

Research Collection School Of Computing and Information Systems

Visual privacy concerns associated with image sharing is a critical issue that need to be addressed to enable safe and lawful use of online social platforms. Users of social media platforms often suffer from no guidance in sharing sensitive images in public, and often face with social and legal consequences. Given the recent success of visual attention based deep learning methods in measuring abstract phenomena like image memorability, we are motivated to investigate whether visual attention based methods could be useful in measuring psychophysical phenomena like “privacy sensitivity”. In this paper we propose PrivAttNet – a visual attention based approach, …

Integrating The Bullet Physics Engine Into Minecraft, Ethan Johnson

Student Academic Conference

During the past fall semester, I started a programming project called Rayon which is designed to be a realistic physics engine implementation that runs alongside the videogame Minecraft. It is a library which Minecraft mod developers can use to implement realistic entity movement into their own mods. Rayon, being entirely written in the Java programming language, currently uses a port of the Bullet physics engine called JBullet which is very outdated and no longer being maintained. To find a more performant solution, I have set out to replace JBullet with an alternative library called LibBulletJME which is designed to interface …

Expanding Social Network Modeling Software And Agent Models For Diffusion Processes, Patrick Vaden Shepherd

Theses and Dissertations--Computer Science

In an increasingly digitally interconnected world, the study of social networks and their dynamics is burgeoning. Anthropologically, the ubiquity of online social networks has had striking implications for the condition of large portions of humanity. This technology has facilitated content creation of virtually all sorts, information sharing on an unprecedented scale, and connections and communities among people with similar interests and skills. The first part of my research is a social network evolution and visualization engine. Built on top of existing technologies, my software is designed to provide abstractions from the underlying libraries, drive real-time network evolution based on user-defined …

Single And Differential Morph Attack Detection, Baaria Chaudhary

Graduate Theses, Dissertations, and Problem Reports (ETD)

Face recognition systems operate on the assumption that a person's face serves as the unique link to their identity. In this thesis, we explore the problem of morph attacks, which have become a viable threat to face verification scenarios precisely because of their inherent ability to break this unique link. A morph attack occurs when two people who share similar facial features morph their faces together such that the resulting face image is recognized as either of two contributing individuals. Morphs inherit enough visual features from both individuals that both humans and automatic algorithms confuse them. The contributions of this …

Natural User Interface Based American Sign Language Tutoring Program, Bryce J. Allen

Williams Honors College, Honors Research Projects

The COVID-19 pandemic has exposed a substantial shortcoming in the modern American educational system: there is a sufficient need for our educators to be trained in the practices required to provide an educational experience for their students that is as effective as in-person instruction. There exist already systems of online instruction for various academic subjects, such as math and the sciences. In the subject of linguistic studies, educational programs have been developed to evaluate student proficiency in both the written and spoken forms of the language in which they are studying. However, there exist few programs that can effectively provide …

Online Marketplace, Devin Hopkins

Williams Honors College, Honors Research Projects

The goal of this project was to create a website that helped a common person search for items from online marketplaces, such as eBay, Amazon, or Facebook Marketplace. The intention was to ease the burden of needing to search several different websites for the same product. Currently, if a person wants to look for a specific item on multiple different marketplaces, they must go to each marketplace individually and search for it. They must enter their specifications repeatedly and load virtually the same web page multiple times. This project’s goal was to condense that so the user would only have …

Source Code Comment Classification Artificial Intelligence, Cole Sutyak

Williams Honors College, Honors Research Projects

Source code comment classification is an important problem for future machine learning solutions. In particular, supervised machine learning solutions that have largely subjective data labels but are difficult to obtain the labels for. Machine learning problems are problems largely because of a lack of data. In machine learning solutions, it is better to have a large amount of mediocre data than it is to have a small amount of good data. While the mediocre data might not produce the best accuracy, it produces the best results because there is much more to learn from the problem.

In this project, data …

Why My Code Summarization Model Does Not Work: Code Comment Improvement With Category Prediction, Qiuyuan Chen, Xin Xia, Han Hu, David Lo, Shanping Li

Research Collection School Of Computing and Information Systems

Code summarization aims at generating a code comment given a block of source code and it is normally performed by training machine learning algorithms on existing code block-comment pairs. Code comments in practice have different intentions. For example, some code comments might explain how the methods work, while others explain why some methods are written. Previous works have shown that a relationship exists between a code block and the category of a comment associated with it. In this article, we aim to investigate to which extent we can exploit this relationship to improve code summarization performance. We first classify comments …

What Makes A Popular Academic Ai Repository?, Yuanrui Fan, Xin Xia, David Lo, Ahmed E. Hassan, Shanping Li

Research Collection School Of Computing and Information Systems

Many AI researchers are publishing code, data and other resources that accompany their papers in GitHub repositories. In this paper, we refer to these repositories as academic AI repositories. Our preliminary study shows that highly cited papers are more likely to have popular academic AI repositories (and vice versa). Hence, in this study, we perform an empirical study on academic AI repositories to highlight good software engineering practices of popular academic AI repositories for AI researchers. We collect 1,149 academic AI repositories, in which we label the top 20% repositories that have the most number of stars as popular, and …

Adversarial Specification Mining, Hong Jin Kang, David Lo

Research Collection School Of Computing and Information Systems

There have been numerous studies on mining temporal specifications from execution traces. These approaches learn finite-state automata (FSA) from execution traces when running tests. To learn accurate specifications of a software system, many tests are required. Existing approaches generalize from a limited number of traces or use simple test generation strategies. Unfortunately, these strategies may not exercise uncommon usage patterns of a software system. To address this problem, we propose a new approach, adversarial specification mining, and develop a prototype, DICE (Diversity through Counter-Examples). DICE has two components: DICE-Tester and DICE-Miner. After mining Linear Temporal Logic specifications from an input …

Agile Software Development: Creating A Cost Of Delay Framework For Air Force Software Factories, J. Goljan, Jonathan D. Ritschel, Scott Drylie, Edward D. White

Faculty Publications

The Air Force software development environment is experiencing a paradigm shift. The 2019 Defense Innovation Board concluded that speed and cycle time must become the most important software metrics if the US military is to maintain its advantage over adversaries.¹ This article proposes utilizing a cost-o­f-d­elay (CoD) framework to prioritize projects toward optimizing readiness. Cost-­of-d­elay is defined as the economic impact resulting from a delaying product delivery or, said another way, opportunity cost. In principle, CoD assesses the negative impacts resulting from changes to the priority of a project.

Analyzing The Blockchain Attack Surface: A Top-Down Approach, Muhammad Saad

Electronic Theses and Dissertations, 2020-2023

Blockchains enable secure asset exchange in a distributed system, thereby facilitating innovative applications such as cryptocurrencies and smart contracts. Although the cryptographic constructs of blockchains are highly secure, however, their practical deployments are vulnerable to various attacks due to their application-specific policies, and their peer-to-peer (P2P) network intricacies. In this work, we take a top-down approach towards exploring those attacks, starting with the application-specific abuse of blockchain-based cryptocurrencies and concluding with the network conditions that violate the blockchain consistency. In the top-down approach, we first analyze the application-specific abuse of blockchain-based cryptocurrencies by uncovering (1) covert cryptocurrency mining in the …

Analysis And Classification Of Software Fault-Proneness And Vulnerabilities, Mohammad Jamil Ahmad

Graduate Theses, Dissertations, and Problem Reports (ETD)

Software bugs are expensive to fix and can lead to catastrophic consequences. Therefore, their analysis and the use of machine learning for prediction are of the utmost importance. Many prediction models have been proposed and different factors affecting the prediction performance have been extensively studied. This work addresses four topics in two areas in software engineering: software fault-proneness prediction and analysis and classification of security-related bug reports. The first topic focuses on the effect of the learning approach (i.e., the way software fault-proneness prediction models are trained and tested) on the performance of software fault-proneness prediction which lacks extensive research …

Software Engineering In Australasia, Sherlock A. Licorish, Christoph Treude, John Grundy, Kelly Blincoe, Stephen Macdonell, Chakkrit Tantithamthavorn, Li Li, Jean-Guy Schneider

Research Collection School Of Computing and Information Systems

Six months ago an important call was made for researchers globally to provide insights into the way Software Engineering is done in their region. Heeding this call, we hereby outline the position Software Engineering in Australasia (New Zealand and Australia). This article first considers the software development methods, practices and tools that are popular in the Australasian software engineering community. We then briefly review the particular strengths of software engineering researchers in Australasia. Finally, we make an open call for collaborators by reflecting on our current position and identifying future opportunities.

Fakespotter: A Simple Yet Robust Baseline For Spotting Ai-Synthesized Fake Faces, Run Wang, Felix Juefei-Xu, Lei Ma, Xiaofei Xie, Yihao Huang, Jian Wang, Yang Liu

Research Collection School Of Computing and Information Systems

In recent years, generative adversarial networks (GANs) and its variants have achieved unprecedented success in image synthesis. They are widely adopted in synthesizing facial images which brings potential security concerns to humans as the fakes spread and fuel the misinformation. However, robust detectors of these AI-synthesized fake faces are still in their infancy and are not ready to fully tackle this emerging challenge. In this work, we propose a novel approach, named FakeSpotter, based on monitoring neuron behaviors to spot AIsynthesized fake faces. The studies on neuron coverage and interactions have successfully shown that they can be served as testing …

Performance-Based Iadl Evaluation Of Older Adults With Cognitive Impairment Within A Smart Home: A Feasibility Study, Iris Rawtaer, Khalid Abdul Jabbar, Xiao Liu, Thit Thit Htat Ying, Anh Thuy Giang, Philip Lin Kiat Yap, Rachel Chin Yee Cheong, Hwee-Pink Tan, Pius Lee Wei Qi, Shiou Liang Wee, Tze Pin Ng

Research Collection School Of Computing and Information Systems

Introduction Mild cognitive impairment (MCI) is characterized by subtle deficits that functional assessment via informant-report measures may not detect. Sensors can potentially detect deficits in everyday functioning in MCI. This study aims to establish feasibility and acceptability of using sensors in a smart home for performance-based assessments of two instrumental activities of daily living (IADLs). Methods Thirty-five older adults (>65 years) performed two IADL tasks in a smart home laboratory equipped with sensors and a web camera. Participants' cognitive states were determined using published criteria including measures of global cognition and comprehensive neuropsychological test batteries. Selected subtasks of the …

Can We Trust Your Explanations? Sanity Checks For Interpreters In Android Malware Analysis, Min Fan, Wenying Wei, Xiaofei Xie, Yang Liu, Xiaohong Guan, Ting Liu

Research Collection School Of Computing and Information Systems

With the rapid growth of Android malware, many machine learning-based malware analysis approaches are proposed to mitigate the severe phenomenon. However, such classifiers are opaque, non-intuitive, and difficult for analysts to understand the inner decision reason. For this reason, a variety of explanation approaches are proposed to interpret predictions by providing important features. Unfortunately, the explanation results obtained in the malware analysis domain cannot achieve a consensus in general, which makes the analysts confused about whether they can trust such results. In this work, we propose principled guidelines to assess the quality of five explanation approaches by designing three critical …