Software Engineering Commons^™

A Deep Dive Into The Impact Of Covid-19 On Software Development, Paulo Anselmo Da Mota Silveira Neto, Umme Ayda Mannan, Eduardo Santana De Almeida, Nachiappan Nagappan, David Lo, Pavneet Singh Kochhar, Cuiyun Gao, Iftekhar Ahmed

Research Collection School Of Computing and Information Systems

The COVID-19 pandemic is considered as the most crucial global health calamity of the century. It has impacted different business sectors around the world and software development is not an exception. This study investigates the impact of COVID-19 on software projects and software development professionals. We conducted a mining software repository study based on 100 GitHub projects developed in Java using ten different metrics. Next, we surveyed 279 software development professionals for better understanding the impact of COVID-19 on daily activities and wellbeing. We identified 12 observations related to productivity, code quality, and wellbeing. Our findings highlight that the impact …

Perioperative Registries In Resource-Limited Settings: The Way Forward For Pakistan, Usama Waqar, Shaheer Ahmed, Ayesha Nasir Hameed, Namrah Aziz, Hina Inam

Medical College Documents

Capable of improving surgical quality, perioperative registries can allow performance benchmarking, reliable reporting and the development of risk-prediction models. Well established in high-income countries, perioperative registries remain limited in lower- and middle-income countries due to several challenges. First, ensuring comprehensive data entry forums to power the registries is difficult because of limited electronic medical records requiring sustained efforts to develop and integrate these into practice. Second, lack of adequate expertise and resources to develop and maintain registry software necessitates the involvement of software developers and information technology personnel. Third, case ascertainment and item completion are challenging secondary to poor-quality medical …

Covid-19 One Year On: Security And Privacy Review Of Contact Tracing Mobile Apps, Wei Yang Ang, Lwin Khin Shar

Research Collection School Of Computing and Information Systems

The ongoing COVID-19 pandemic caused 3.8 million deaths since December 2019. At the current vaccination pace, this global pandemic could persist for several years. Throughout the world, contact tracing (CT) apps were developed, which play a significant role in mitigating the spread of COVID-19. This work examines the current state of security and privacy landscape of mobile CT apps. Our work is the first attempt, to our knowledge, which provides a comprehensive analysis of 70 CT apps used worldwide as of year Q1 2021. Among other findings, we observed that 80% of them may have handled sensitive data without adequate …

Oidpr: Optimized Insulin Dosage Via Privacy‐Preserving Reinforcement Learning, Zuobin Ying, Yun Zhang, Shuanglong Cao, Shengmin Xu, Maode Ma

Research Collection School Of Computing and Information Systems

The precision of insulin dosage is essential in the process of diabetes treatment. The fact is providing precise dosage is almost impossible for clinicians since blood sugar levels are dynamically affected by many factors. Even though some auxiliary dosing systems have been proposed, the required real‐time physical data about the health situation of diabetics is still hard to synchronize to the end‐devices instantly. The traditional personalized drug delivery frameworks for accurate dosing of insulin always collect and transmit medical data in cleartext, which raises privacy problems. In this article, we propose a framework for an optimized insulin dosage via privacy‐preserving …

Immigrant Families' Health-Related Information Behavior On Instant Messaging Platforms: Health-Related Information Exchange In Immigrant Family Groups On Instant Messaging Platforms, Lev Poretski, Taamannae Taabassum, Anthony Tang

Research Collection School Of Computing and Information Systems

For immigrant families, instant messaging family groups are a common platform for sharing and discussing health-related information. Immigrants often maintain contact with their family abroad and trust information in shared IM family groups more than the information from local authorities and sources. In this study, we aimed to understand health-related information behaviors of immigrant families in their IM family groups. Based on the interviews with 6 participants from immigrant families to Canada, we found that immigrant families’ discourse on IM platforms is motivated by love and care for other family members. The families used local and international sources of information, …

App Development For Wearable Sensors, Connor Pittman, Christopher Chappie, Patrick A. Tetreault

Thinking Matters Symposium

The objective of this research project was to create a wearable device that monitors bodily functions for the user to view on their smartphone. Sensor data is processed using the Arduino Nano 33 BLE microcontroller. The sensors used in this project include: proximity, temperature, humidity, heart rate, pressure, and skin impedance. This project takes advantage of the Arduino's Bluetooth low energy (BLE) capabilities so that all the data can be transmitted to a smartphone. This presentation shows the challenges faced during the project and how they were overcome. Some of these challenges include: programming, how heart rate sensors work, and …

Implementation Of An Electronic Alert For Improving Adherence To Diabetic Foot Exam Screenings In Type 2 Diabetic Patients In Primary Care Clinics, Ruby Denson

Student Scholarly Projects

Practice Problem: Patients with type 2 diabetes mellitus (T2DM) are at an increased risk of complications including foot ulcerations (Harris-Hayes et al., 2020). Preventive care is essential for the early detection of foot ulcers but despite the advantages of preventive screening, a limited number of primary care providers perform annual foot exams (Williams et al., 2018).

PICOT: The clinical question that guided this project was, “In adult patients with T2DM receiving care in a primary care setting, will the implementation of an electronic clinical reminder alert (ECR) increase provider adherence to performing an annual diabetic foot exam and risk …

Erica: Enabling Real-Time Mistake Detection And Corrective Feedback For Free-Weights Exercises, Meeralakshmi Radhakrishnan, Darshana Rathnayake, Koon Han Ong, Inseok Hwang, Archan Misra

Research Collection School Of Computing and Information Systems

We present ERICA, a digital personal trainer for users performing free weights exercises, with two key differentiators: (a) First, unlike prior approaches that either require multiple on-body wearables or specialized infrastructural sensing, ERICA uses a single in-ear "earable" device (piggybacking on a form factor routinely used by millions of gym-goers) and a simple inertial sensor mounted on each weight equipment; (b) Second, unlike prior work that focuses primarily on quantifying a workout, ERICA additionally identifies a variety of fine-grained exercising mistakes and delivers real-time, in-situ corrective instructions. To achieve this, we (a) design a robust approach for user-equipment association that …

Ml-Medic: A Preliminary Study Of An Interactive Visual Analysis Tool Facilitating Clinical Applications Of Machine Learning For Precision Medicine, Laura Stevens, David Kao, Jennifer Hall, Carsten Görg, Kaitlyn Abdo, Erik Linstead

Engineering Faculty Articles and Research

Accessible interactive tools that integrate machine learning methods with clinical research and reduce the programming experience required are needed to move science forward. Here, we present Machine Learning for Medical Exploration and Data-Inspired Care (ML-MEDIC), a point-and-click, interactive tool with a visual interface for facilitating machine learning and statistical analyses in clinical research. We deployed ML-MEDIC in the American Heart Association (AHA) Precision Medicine Platform to provide secure internet access and facilitate collaboration. ML-MEDIC’s efficacy for facilitating the adoption of machine learning was evaluated through two case studies in collaboration with clinical domain experts. A domain expert review was also …

Development Of Fully Balanced Ssfp And Computer Vision Applications For Mri-Assisted Radiosurgery (Mars), Jeremiah Sanders

Dissertations and Theses (Open Access)

Prostate cancer is the second most common cancer in men and the second-leading cause of cancer death in men. Brachytherapy is a highly effective treatment option for prostate cancer, and is the most cost-effective initial treatment among all other therapeutic options for low to intermediate risk patients of prostate cancer. In low-dose-rate (LDR) brachytherapy, verifying the location of the radioactive seeds within the prostate and in relation to critical normal structures after seed implantation is essential to ensuring positive treatment outcomes.

One current gap in knowledge is how to simultaneously image the prostate, surrounding anatomy, and radioactive seeds within the …

Early Detection Of Mild Cognitive Impairment With In-Home Sensors To Monitor Behavior Patterns In Community-Dwelling Senior Citizens In Singapore: Cross-Sectional Feasibility Study, Iris Rawtaer, Rathi Mahendran, Ee Heok Kua, Hwee-Pink Tan, Hwee Xian Tan, Tih-Shih Lee, Tze Pin Ng

Research Collection School Of Computing and Information Systems

Background: Dementia is a global epidemic and incurs substantial burden on the affected families and the health care system. A window of opportunity for intervention is the predementia stage known as mild cognitive impairment (MCI). Individuals often present to services late in the course of their disease and more needs to be done for early detection; sensor technology is a potential method for detection.Objective: The aim of this cross-sectional study was to establish the feasibility and acceptability of utilizing sensors in the homes of senior citizens to detect changes in behaviors unobtrusively.Methods: We recruited 59 community-dwelling seniors (aged >65 years …

Smrtfridge: Iot-Based, User Interaction-Driven Food Item & Quantity Sensing, Amit Sharma, Archan Misra, Vengateswaran Subramaniam, Youngki Lee

Research Collection School Of Computing and Information Systems

We present SmrtFridge, a consumer-grade smart fridge prototype that demonstrates two key capabilities: (a) identify the individual food items that users place in or remove from a fridge, and (b) estimate the residual quantity of food items inside a refrigerated container (opaque or transparent). Notably, both of these inferences are performed unobtrusively, without requiring any explicit user action or tagging of food objects. To achieve these capabilities, SmrtFridge uses a novel interaction-driven, multi-modal sensing pipeline, where Infrared (IR) and RGB video sensing, triggered whenever a user interacts naturally with the fridge, is used to extract a foreground visual image of …

Vitamon: Measuring Heart Rate Variability Using Smartphone Front Camera, Sinh Huynh, Rajesh Krishna Balan, Jeonggil Ko, Youngki Lee

Research Collection School Of Computing and Information Systems

We present VitaMon, a mobile sensing system that can measure the inter-heartbeat interval (IBI) from the facial video captured by a commodity smartphone's front camera. The continuous IBI measurement is used to compute heart rate variability (HRV), one of the most important markers of the autonomic nervous system (ANS) regulation. The underlying idea of VitaMon is that video recording of human face contains multiple cardiovascular pulse signals with different phase shift. Our measurement on 10 participants shows the significant time delay (36.79 ms) between the pulse signals measured at the jaw region and forehead region. VitaMon leverages deep neural network …

A Low-Cost Soft Robotic Hand Exoskeleton For Use In Therapy Of Limited Hand–Motor Function, Grant Rudd, Liam Daly, Vukica Jovanovic, Filip Cukov

Engineering Technology Faculty Publications

We present the design and validation of a low-cost, customizable and 3D-printed anthropomorphic soft robotic hand exoskeleton for rehabilitation of hand injuries using remotely administered physical therapy regimens. The design builds upon previous work done on cable actuated exoskeleton designs by implementing the same kinematic functionality, but with the focus shifted to ease of assembly and cost effectiveness as to allow patients and physicians to manufacture and assemble the hardware necessary to implement treatment. The exoskeleton was constructed solely from 3D-printed and widely available of-the-shelf components. Control of the actuators was realized using an Arduino microcontroller, with a custom-designed shield …

Stressmon: Large Scale Detection Of Stress And Depression In Campus Environment Using Passive Coarse-Grained Location Data, Camellia Zakaria

Dissertations and Theses Collection (Open Access)

The rising mental health illnesses of severe stress and depression is of increasing concern worldwide. Often associated by similarities in symptoms, severe stress can take a toll on a person’s productivity and result in depression if the stress is left unmanaged. Unfortunately, depression can occur without any feelings of stress. With depression growing as a leading cause of disability in economic productivity, there has been a sharp rise in mental health initiatives to improve stress and depression management. To offer such services conveniently and discreetly, recent efforts have focused on using mobile technologies. However, these initiatives usually require users to …

Deep Ecg Estimation Using A Bed-Attached Geophone, Jae Yeon Park, Hyeon Cho, Wonjun Hwang, Rajesh Krishna Balan, Jeong Gil Ko

Research Collection School Of Computing and Information Systems

Electrocardiogram (ECG) signals offer rich information for analyzing and understanding the cardiac activity of a person. The continuous monitoring of ECG can help diagnose cardiac disorders, such as arrhythmia, effectively. While many wearable healthcare platforms offer continuous ECG monitoring, these devices are cumbersome in the fact that they need to be continuously attached to the human body, which causes uncomfortableness, and limits their usage when monitoring a person's ECG throughout the night as they sleep. In this work, we propose a fully non-intrusive sensing system for monitoring the ECG of a person while in bed. Specifically, we present Heartquake, a …

Design And Assessment Of Myoelectric Games For Prosthesis Training Of Upper Limb Amputees, Meeralakshmi Radhakrishnan, Asim Smailagic, Brian French, Daniel P. Siewiorek, Rajesh Krishna Balan

Research Collection School Of Computing and Information Systems

In this paper, we present the design and evaluation of our system, which provides an engaging game-based pre-prosthesis training environment for upper limb transradial amputees. We believe that patients who train using such a training tool will demonstrate significantly higher improvement in functional performance tests using a myoelectric prosthesis than when conventional pre-prosthesis training protocols are used. We re-designed two simple games to be playable using three muscle contractions which are appropriate to pre-prosthesis exercises and are detected by an EMG-based arm sleeve. Through user studies conducted with 16 non-amputee subjects, we show that the proposed games are enjoyable, fun …

Phr: Patient Health Record, Quinn Nelson

Theses/Capstones/Creative Projects

The rapid development of information technology systems has expanded into multiple disciplines and results in systems that are limited by initial design and implementation: the Healthcare Information Technology (HIT) space is no different. The introduction of the Electronic Health Record (EHR) system has changed the way healthcare operates. Initial designs of these systems were focused on serving the needs of insurance companies and healthcare billing departments. Research shows that the design of EHR systems negatively impact provider-patient interactions and the care they receive. This capstone project capitalizes on the collaboration efforts between UNO and UNMC – by joining a research …

Cleaver: Classification Of Everyday Activities Via Ensemble Recognizers, Samantha Hsu

Master's Theses

Physical activity can have immediate and long-term benefits on health and reduce the risk for chronic diseases. Valid measures of physical activity are needed in order to improve our understanding of the exact relationship between physical activity and health. Activity monitors have become a standard for measuring physical activity; accelerometers in particular are widely used in research and consumer products because they are objective, inexpensive, and practical. Previous studies have experimented with different monitor placements and classification methods. However, the majority of these methods were developed using data collected in controlled, laboratory-based settings, which is not reliably representative of real …

Leveling The Playing Field: Supporting Neurodiversity Via Virtual Realities, Louanne E. Boyd, Kendra Day, Natalia Stewart, Kaitlyn Abdo, Kathleen Lamkin, Erik J. Linstead

Mathematics, Physics, and Computer Science Faculty Articles and Research

Neurodiversity is a term that encapsulates the diverse expression of human neurology. By thinking in broad terms about neurological development, we can become focused on delivering a diverse set of design features to meet the needs of the human condition. In this work, we move toward developing virtual environments that support variations in sensory processing. If we understand that people have differences in sensory perception that result in their own unique sensory traits, many of which are clustered by diagnostic labels such as Autism Spectrum Disorder (ASD), Sensory Processing Disorder, Attention-Deficit/Hyperactivity Disorder, Rett syndrome, dyslexia, and so on, then we …

Identifying Elderly With Poor Sleep Quality Using Unobtrusive In-Home Sensors For Early Intervention, Xiaoping Ma, W K P Neranjana Nadee Rodrigo Goonawardene, Hwee-Pink Tan

Research Collection School Of Computing and Information Systems

Along with the upward trend in population ageing is the increasing proportion of the elderly population living alone in the community. This group is especially vulnerable as the onset of various physical, social and mental health issues may be more likely and may go undetected. However, smart homes enabled with elderly monitoring and care systems (EMCS) can now be used to alert caregivers of anomalies in the daily living patterns of the elderly. In this study, we focus on the sleep quality as the key living pattern, as it has been shown that poor sleep quality can lead to health …

Finding Small-Bowel Lesions: Challenges In Endoscopy-Image-Based Learning Systems, Jungmo Ahn, Loc Nguyen Huynh, Rajesh Krishna Balan, Youngki Lee, Jeonggil Ko

Research Collection School Of Computing and Information Systems

Capsule endoscopy identifies damaged areas in a patient's small intestine but often outputs poor-quality images or misses lesions, leading to either misdiagnosis or repetition of the lengthy procedure. The authors propose applying deep-learning models to automatically process the captured images and identify lesions in real time, enabling the capsule to take additional images of a specific location, adjust its focus level, or improve image quality. The authors also describe the technical challenges in realizing a viable automated capsule-endoscopy system.

Fast And Robust Segmentation Of White Blood Cell Images By Self-Supervised Learning, Xin Zheng, Yong Wang, Guoyou Wang, Jianguo Liu

Research Collection School Of Computing and Information Systems

A fast and accurate white blood cell (WBC) segmentation remains a challenging task, as different WBCs vary significantly in color and shape due to cell type differences, staining technique variations and the adhesion between the WBC and red blood cells. In this paper, a self-supervised learning approach, consisting of unsupervised initial segmentation and supervised segmentation refinement, is presented. The first module extracts the overall foreground region from the cell image by K-means clustering, and then generates a coarse WBC region by touching-cell splitting based on concavity analysis. The second module further uses the coarse segmentation result of the first module …

Unobtrusive Monitoring To Detect Depression For Elderly With Chronic Illnesses, Jung-Yoon Kim, Na Liu, Hwee Xian Tan, Chao-Hsien Chu

Research Collection School Of Computing and Information Systems

Mental health related disorders are common diseases, especially among the elder. Among the various mental health diseases, one potential threat to ageing-in-place is the risk of depression. In this paper, we propose a simple unobtrusive sensing system using passive infra-red motion sensors to monitor the activities of daily living of elderly, who are living alone. A feature extraction module comprising of three layers-states, events, and activities, and the corresponding algorithms are proposed to extract features. Four popular classification models-neural network, C4.5 decision tree, Bayesian network, and support vector machine are then applied to detect the severity of depression. We implement …

Towards Unobtrusive Mental Well-Being Monitoring For Independent-Living Elderly, Sinh Huynh, Hwee-Pink Tan, Youngki Lee

Research Collection School Of Computing and Information Systems

It is essential to proactively detect mental health problems such as loneliness and depression in the independently-living elderly for timely intervention by caregivers. In this paper, we introduce an unobtrusive sensor-enabled monitoring system that has been deployed to 50 government housing ats with the independent-living elderly for two years. Then, we also present our initial findings from the 6-month sensor data between August 2015 and April 2016 as well as the survey data to measure the subjective well-being indicator. Our study showed the promising results that "room-level movements within a house" and "going out" behavior captured by our simple sensor …

User-Centered Design Of Multi-Gene Sequencing Panel Reports For Clinicians., Elizabeth Cutting, Meghan Banchero, Amber L. Beitelshees, James J. Cimino, Guilherme Del Fiol, Ayse P. Gurses, Mark A. Hoffman, Linda Jo Bone Jeng, Kensaku Kawamoto, Mark Kelemen, Harold Alan Pincus, Alan R. Shuldiner, Marc S. Williams, Toni I. Pollin, Casey Lynnette Overby

Manuscripts, Articles, Book Chapters and Other Papers

The objective of this study was to develop a high-fidelity prototype for delivering multi-gene sequencing panel (GS) reports to clinicians that simulates the user experience of a final application. The delivery and use of GS reports can occur within complex and high-paced healthcare environments. We employ a user-centered software design approach in a focus group setting in order to facilitate gathering rich contextual information from a diverse group of stakeholders potentially impacted by the delivery of GS reports relevant to two precision medicine programs at the University of Maryland Medical Center. Responses from focus group sessions were transcribed, coded and …

Hifocap: An Android App For Wearable Health Devices, Yoonsik Cheon, Rodrigo A. Romero

Departmental Technical Reports (CS)

Android is becoming a platform for mobile health-care devices and apps. However, there are many challenges in developing soft real-time, health-care apps for non-dedicated mobile devices such as smartphones and tablets. In this paper we share our experiences in developing the HifoCap app, a mobile app for receiving electroencephalogram (EEG) wave samples from a wearable device, visualizing the received EEG samples, and transmitting them to a cloud storage server. The app is network and data-intensive. We describe the challenges we faced while developing the HifoCap app---e.g., ensuring the soft real-time requirement in the presence of uncertainty on the Android platform---along …

Ciliate Codon Translator Program Manual, Quentin D. Altemose

Mathematics Summer Fellows

Understanding the evolutionary history of organisms allows us to better comprehend selective pressures and their effects on larger populations. In our study, we focused on analyzing the DNA of ciliate groups, which are single celled protozoans characterized by the presence of cilia on their outer membrane. We utilized the DNA of the organisms to analyze the changes in population genotype over time. We tested existing evolutionary models (designed to represent natural genetic variation over time in populations) against our data to identify the model with the best fit and likelihood. From the DNA and the evolutionary model with the highest …

Better Together

DePaul Magazine

Faculty have taken full advantage of the university's innovative intercollegiate grant program, and the resulting research is as interesting and diverse as the collaborators themselves. What is resulting is research on "Patient and Primary Care Provider Perspectives on Recreational and Therapeutic Cannabis Use Within a Changing Socioculltural and Political Context;" a new minor in climate change science and policy; a new class, Communication, Coding and Entrepreneurship; brain inflammation research; and the project "Cosmology Meets Continental Philosophy: Natural Laws and Why There Is Something Rather Than Nothing"

Development And Use Of A Tablet-Based Resuscitation Sheet For Improving Outcomes During Intensive Patient Care, Wasif Bokahri, Vimla L. Patel, Ashish Amresh, Ayan Sen

Publications

Data documentation from resuscitation events in hospitals, termed "code blue" events, utilizes a paper form, which is institution-specific. Problems with data capture and transcription exists, due to the challenges of dynamic documentation of patient, event and outcome variables as the code blue event unfolds. We hypothesize that an electronic version of code blue real-time data capture would lead to improved resuscitation data transcription, and enable clinicians to address deficiencies in quality of care. To this effect, we present the design of a tablet-based application and its use by 20 nurses at the Mayo Clinic hospital. The results showed that the …