Programming Languages and Compilers Commons^™

Speculative Automated Refactoring Of Imperative Deep Learning Programs To Graph Execution, Raffi Khatchadourian Ph.D., Tatiana Castro Vélez, Mehdi Bagherzadeh, Nan Jia, Anita Raja

Publications and Research

Efficiency is essential to support ever-growing datasets, especially for Deep Learning (DL) systems. DL frameworks have traditionally embraced deferred execution-style DL code---supporting symbolic, graph-based Deep Neural Network (DNN) computation. While scalable, such development is error-prone, non-intuitive, and difficult to debug. Consequently, more natural, imperative DL frameworks encouraging eager execution have emerged but at the expense of run-time performance. Though hybrid approaches aim for the "best of both worlds," using them effectively requires subtle considerations. Our key insight is that, while DL programs typically execute sequentially, hybridizing imperative DL code resembles parallelizing sequential code in traditional systems. Inspired by this, we …

Speculative Automated Refactoring Of Imperative Deep Learning Programs To Graph Execution, Raffi Khatchadourian Ph.D., Tatiana Castro Vélez, Mehdi Bagherzadeh, Nan Jia, Anita Raja

Publications and Research

Efficiency is essential to support ever-growing datasets, especially for Deep Learning (DL) systems. DL frameworks have traditionally embraced deferred execution-style DL code---supporting symbolic, graph-based Deep Neural Network (DNN) computation. While scalable, such development is error-prone, non-intuitive, and difficult to debug. Consequently, more natural, imperative DL frameworks encouraging eager execution have emerged but at the expense of run-time performance. Though hybrid approaches aim for the "best of both worlds," using them effectively requires subtle considerations. Our key insight is that, while DL programs typically execute sequentially, hybridizing imperative DL code resembles parallelizing sequential code in traditional systems. Inspired by this, we …

Speculative Automated Refactoring Of Imperative Deep Learning Programs To Graph Execution, Raffi T. Khatchadourian Ph.D., Tatiana Castro Vélez, Mehdi Bagherzadeh, Nan Jia, Anita Raja

Publications and Research

Efficiency is essential to support ever-growing datasets, especially for Deep Learning (DL) systems. DL frameworks have traditionally embraced deferred execution-style DL code---supporting symbolic, graph-based Deep Neural Network (DNN) computation. While scalable, such development is error-prone, non-intuitive, and difficult to debug. Consequently, more natural, imperative DL frameworks encouraging eager execution have emerged but at the expense of run-time performance. Though hybrid approaches aim for the "best of both worlds," using them effectively requires subtle considerations. Our key insight is that, while DL programs typically execute sequentially, hybridizing imperative DL code resembles parallelizing sequential code in traditional systems. Inspired by this, we …

Hybridize Functions: A Tool For Automatically Refactoring Imperative Deep Learning Programs To Graph Execution, Raffi Khatchadourian, Tatiana Castro Vélez, Mehdi Bagherzadeh, Nan Jia, Anita Raja

Publications and Research

Efficiency is essential to support responsiveness w.r.t. ever-growing datasets, especially for Deep Learning (DL) systems. DL frameworks have traditionally embraced deferred execution-style DL code—supporting symbolic, graph-based Deep Neural Network (DNN) computation. While scalable, such development is error-prone, non-intuitive, and difficult to debug. Consequently, more natural, imperative DL frameworks encouraging eager execution have emerged but at the expense of run-time performance. Though hybrid approaches aim for the “best of both worlds,” using them effectively requires subtle considerations to make code amenable to safe, accurate, and efficient graph execution—avoiding performance bottlenecks and semantically inequivalent results. We discuss the engineering aspects of a …

Hybridize Functions: A Tool For Automatically Refactoring Imperative Deep Learning Programs To Graph Execution, Raffi Khatchadourian, Tatiana Castro Vélez, Mehdi Bagherzadeh, Nan Jia, Anita Raja

Publications and Research

Efficiency is essential to support responsiveness w.r.t. ever-growing datasets, especially for Deep Learning (DL) systems. DL frameworks have traditionally embraced deferred execution-style DL code—supporting symbolic, graph-based Deep Neural Network (DNN) computation. While scalable, such development is error-prone, non-intuitive, and difficult to debug. Consequently, more natural, imperative DL frameworks encouraging eager execution have emerged but at the expense of run-time performance. Though hybrid approaches aim for the “best of both worlds,” using them effectively requires subtle considerations to make code amenable to safe, accurate, and efficient graph execution—avoiding performance bottlenecks and semantically inequivalent results. We discuss the engineering aspects of a …

Hybridize Functions: A Tool For Automatically Refactoring Imperative Deep Learning Programs To Graph Execution, Raffi Khatchadourian, Tatiana Castro Vélez, Mehdi Bagherzadeh, Nan Jia, Anita Raja

Publications and Research

Efficiency is essential to support responsiveness w.r.t. ever-growing datasets, especially for Deep Learning (DL) systems. DL frameworks have traditionally embraced deferred execution-style DL code—supporting symbolic, graph-based Deep Neural Network (DNN) computation. While scalable, such development is error-prone, non-intuitive, and difficult to debug. Consequently, more natural, imperative DL frameworks encouraging eager execution have emerged but at the expense of run-time performance. Though hybrid approaches aim for the "best of both worlds," using them effectively requires subtle considerations to make code amenable to safe, accurate, and efficient graph execution—avoiding performance bottlenecks and semantically inequivalent results. We discuss the engineering aspects of a …

Interoperability In Deep Learning: A User Survey And Failure Analysis Of Onnx Model Converters, Purvish Jajal, Wenxin Jiang, Arav Tewari, Erik Kocinare, Joseph Woo, Anusha Sarraf, Yung-Hsiang Lu, George Thiruvathukal, James C. Davis

Computer Science: Faculty Publications and Other Works

Software engineers develop, fine-tune, and deploy deep learning (DL) models using a variety of development frameworks and runtime environments. DL model converters move models between frameworks and to runtime environments. Conversion errors compromise model quality and disrupt deployment. However, the failure characteristics of DL model converters are unknown, adding risk when using DL interoperability technologies. This paper analyzes failures in DL model converters. We survey software engineers about DL interoperability tools, use cases, and pain points (N=92). Then, we characterize failures in model converters associated with the main interoperability tool, ONNX (N=200 issues in PyTorch and TensorFlow). Finally, we formulate …

Towards Safe Automated Refactoring Of Imperative Deep Learning Programs To Graph Execution, Raffi Khatchadourian, Tatiana Castro Vélez, Mehdi Bagherzadeh, Nan Jia, Anita Raja

Publications and Research

Efficiency is essential to support responsiveness w.r.t. ever-growing datasets, especially for Deep Learning (DL) systems. DL frameworks have traditionally embraced deferred execution-style DL code—supporting symbolic, graph-based Deep Neural Network (DNN) computation. While scalable, such development is error-prone, non-intuitive, and difficult to debug. Consequently, more natural, imperative DL frameworks encouraging eager execution have emerged at the expense of run-time performance. Though hybrid approaches aim for the “best of both worlds,” using them effectively requires subtle considerations to make code amenable to safe, accurate, and efficient graph execution. We present our ongoing work on automated refactoring that assists developers in specifying whether …

Towards Safe Automated Refactoring Of Imperative Deep Learning Programs To Graph Execution, Raffi Khatchadourian, Tatiana Castro Vélez, Mehdi Bagherzadeh, Nan Jia, Anita Raja

Publications and Research

Efficiency is essential to support responsiveness w.r.t. ever-growing datasets, especially for Deep Learning (DL) systems. DL frameworks have traditionally embraced deferred execution-style DL code—supporting symbolic, graph-based Deep Neural Network (DNN) computation. While scalable, such development is error-prone, non-intuitive, and difficult to debug. Consequently, more natural, imperative DL frameworks encouraging eager execution have emerged at the expense of run-time performance. Though hybrid approaches aim for the "best of both worlds," using them effectively requires subtle considerations to make code amenable to safe, accurate, and efficient graph execution. We present our ongoing work on automated refactoring that assists developers in specifying whether …

Application Of Machine Learning Algorithms For Elucidation Of Biological Networks From Time Series Gene Expression Data, Krupa Nagori

Computational and Data Sciences (PhD) Dissertations

This dissertation provides a deep dive into understanding gene expression, interaction, regulation, and the intricate mechanisms behind heliotropism and phototropism. Additionally, the research accentuates the significance of machine learning techniques, specifically for gene regulatory networks (GRNs).

Chapter 1 offers an exhaustive benchmarking of GRN methodologies, furthering our comprehension of machine-learning models relevant to GRNs. The evaluation revealed that GRNTE, SWING, and BiXGBoost emerged as top-performing methods in GRN inference. The suitability of these models varies depending on specific research criteria such as computational needs, dataset dimensions, and performance metric emphasis. An innovation of this chapter was the introduction of Colab …

Lstm-Sdm: An Integrated Framework Of Lstm Implementation For Sequential Data Modeling[Formula Presented], Hum Nath Bhandari, Binod Rimal, Nawa Raj Pokhrel, Ramchandra Rimal, Keshab R. Dahal

Arts & Sciences Faculty Publications

LSTM-SDM is a python-based integrated computational framework built on the top of Tensorflow/Keras and written in the Jupyter notebook. It provides several object-oriented functionalities for implementing single layer and multilayer LSTM models for sequential data modeling and time series forecasting. Multiple subroutines are blended to create a conducive user-friendly environment that facilitates data exploration and visualization, normalization and input preparation, hyperparameter tuning, performance evaluations, visualization of results, and statistical analysis. We utilized the LSTM-SDM framework in predicting the stock market index and observed impressive results. The framework can be generalized to solve several other real-world time series problems.

Challenges In Migrating Imperative Deep Learning Programs To Graph Execution: An Empirical Study, Tatiana Castro Vélez, Raffi Khatchadourian, Mehdi Bagherzadeh, Anita Raja

Publications and Research

Efficiency is essential to support responsiveness w.r.t. ever-growing datasets, especially for Deep Learning (DL) systems. DL frameworks have traditionally embraced deferred execution-style DL code that supports symbolic, graph-based Deep Neural Network (DNN) computation. While scalable, such development tends to produce DL code that is error-prone, non-intuitive, and difficult to debug. Consequently, more natural, less error-prone imperative DL frameworks encouraging eager execution have emerged at the expense of run-time performance. While hybrid approaches aim for the "best of both worlds," the challenges in applying them in the real world are largely unknown. We conduct a data-driven analysis of challenges—and resultant bugs—involved …

Challenges In Migrating Imperative Deep Learning Programs To Graph Execution: An Empirical Study, Tatiana Castro Vélez, Raffi Khatchadourian, Mehdi Bagherzadeh, Anita Raja

Publications and Research

Efficiency is essential to support responsiveness w.r.t. ever-growing datasets, especially for Deep Learning (DL) systems. DL frameworks have traditionally embraced deferred execution-style DL code that supports symbolic, graph-based Deep Neural Network (DNN) computation. While scalable, such development tends to produce DL code that is error-prone, non-intuitive, and difficult to debug. Consequently, more natural, less error-prone imperative DL frameworks encouraging eager execution have emerged at the expense of run-time performance. While hybrid approaches aim for the "best of both worlds," the challenges in applying them in the real world are largely unknown. We conduct a data-driven analysis of challenges—and resultant bugs—involved …

Novel Deep Learning Methods Combined With Static Analysis For Source Code Processing, Duy Quoc Nghi Bui

Dissertations and Theses Collection (Open Access)

It is desirable to combine machine learning and program analysis so that one can leverage the best of both to increase the performance of software analytics. On one side, machine learning can analyze the source code of thousands of well-written software projects that can uncover patterns that partially characterize software that is reliable, easy to read, and easy to maintain. On the other side, the program analysis can be used to define rigorous and unique rules that are only available in programming languages, which enrich the representation of source code and help the machine learning to capture the patterns better. …

A Multi-Input Deep Learning Model For C/C++ Source Code Attribution, Richard J. Tindell Ii

Masters Theses, 2020-current

Code stylometry is applying analysis techniques to a collection of source code or binaries to determine variations in style. The variations extracted are often used to identify the author of the text or to differentiate one piece from another.

In this research, we were able to create a multi-input deep learning model that could accurately categorize and group code from multiple projects. The deep learning model took as input word-based tokenization for code comments, character-based tokenization for the source code text, and the metadata features described by A. Caliskan-Islam et al. Using these three inputs, we were able to achieve …

Exploiting Approximation, Caching And Specialization To Accelerate Vision Sensing Applications, Nguyen Loc Huynh

Dissertations and Theses Collection (Open Access)

Over the past few years, deep learning has emerged as state-of-the-art solutions for many challenging computer vision tasks such as face recognition, object detection, etc. Despite of its outstanding performance, deep neural networks (DNNs) are computational intensive, which prevent them to be widely adopted on billions of mobile and embedded devices with scarce resources. To address that limitation, we
focus on building systems and optimization algorithms to accelerate those models, making them more computational-efficient.
First, this thesis explores the computational capabilities of different existing processors (or co-processors) on modern mobile devices. It recognizes that by leveraging the mobile Graphics Processing …

Corrn: Cooperative Reflection Removal Network, Renjie Wen, Boxin Shi, Haoliang Li, Ling-Yu Duan, Ah-Hwee Tan, Alex C. Kot

Research Collection School Of Computing and Information Systems

Removing the undesired reflections from images taken through the glass is of broad application to various computer vision tasks. Non-learning based methods utilize different handcrafted priors such as the separable sparse gradients caused by different levels of blurs, which often fail due to their limited description capability to the properties of real-world reflections. In this paper, we propose a network with the feature-sharing strategy to tackle this problem in a cooperative and unified framework, by integrating image context information and the multi-scale gradient information. To remove the strong reflections existed in some local regions, we propose a statistic loss by …

Deep Code Comment Generation With Hybrid Lexical And Syntactical Information, Xing Hu, Ge Li, Xin Xia, David Lo, Zhi Jin

Research Collection School Of Computing and Information Systems

During software maintenance, developers spend a lot of time understanding the source code. Existing studies show that code comments help developers comprehend programs and reduce additional time spent on reading and navigating source code. Unfortunately, these comments are often mismatched, missing or outdated in software projects. Developers have to infer the functionality from the source code. This paper proposes a new approach named Hybrid-DeepCom to automatically generate code comments for the functional units of Java language, namely, Java methods. The generated comments aim to help developers understand the functionality of Java methods. Hybrid-DeepCom applies Natural Language Processing (NLP) techniques to …

Comparative Study Of Deep Learning Models For Network Intrusion Detection, Brian Lee, Sandhya Amaresh, Clifford Green, Daniel Engels

SMU Data Science Review

In this paper, we present a comparative evaluation of deep learning approaches to network intrusion detection. A Network Intrusion Detection System (NIDS) is a critical component of every Internet connected system due to likely attacks from both external and internal sources. A NIDS is used to detect network born attacks such as Denial of Service (DoS) attacks, malware replication, and intruders that are operating within the system. Multiple deep learning approaches have been proposed for intrusion detection systems. We evaluate three models, a vanilla deep neural net (DNN), self-taught learning (STL) approach, and Recurrent Neural Network (RNN) based Long Short …