Other Computer Sciences Commons^™

Evaluation Of Gpu Acceleration For Wrf–Sfire, Joshua Benz

Master's Projects

WRF–SFIRE is an open source, atmospheric–wildfire model that couples the WRF model with the level set fire spread model to simulate wildfires in real time. This model has many applications and more scientific questions can be asked and answered if the model can be run faster. Nvidia has put a lot of effort into easing the barrier of entry for accelerating applications with their tools to be run on GPUs. Various physical simulations have been successfully ported to utilize GPUs and have benefited from the speed increase. In this research, we take a look at WRF-SFIRE and try to use …

Nitrogenase Iron Protein Classification Using Cnn Neural Network, Amer Rez

Master's Projects

The nitrogenase iron protein (NifH) is extensively used to study nitrogen fixation, the ecologically vital process of reducing atmospheric nitrogen to a bioavailable form. The discovery rate of novel NifH sequences is high, and there is an ongoing need for software tools to mine NifH records from the GenBank repository. Since record annotations are unreliable, because they contain errors, classifiers based on sequence alone are required. The ARBitrator classifier is highly successful but must be initialized by extensive manual effort. A Deep Learning approach could substantially reduce manual intervention. However, attempts to build a character-based Deep Learning NifH classifier were …

Comparison Of Major Cloud Providers, Justin Berman

Other Student Works

This paper will compare the following major cloud providers: Microsoft Azure, Amazon AWS, Google Cloud, and IBM Cloud. An introduction to the companies and their history, fundamentals and services, strengths and weaknesses, costs, and their security will be discussed throughout this writing.

A Longitudinal Analysis Of Pathways To Computing Careers: Defining Broadening Participation In Computing (Bpc) Success With A Rearview Lens, Mercy Jaiyeola

Theses and Dissertations

Efforts to increase the participation of groups historically underrepresented in computing studies, and in the computing workforce, are well documented. It is a national effort with funding from a variety of sources being allocated to research in broadening participation in computing (BPC). Many of the BPC efforts are funded by the National Science Foundation (NSF) but as existing literature shows, the growth in representation of traditionally underrepresented minorities and women is not commensurate to the efforts and resources that have been directed toward this aim.

Instead of attempting to tackle the barriers to increasing representation, this dissertation research tackles the …

Proquest Tdm Studio: A Text And Data Mining Solution, Anamika Megwalu, Anne Marie Engelsen

Faculty Research, Scholarly, and Creative Activity

TDM Studio is an integrated platform offered by ProQuest for data and text mining. TDM stands for text and data mining. This cloud-based, all-in-one innovative product is designed to offer researchers a clean interface with rights-cleared content, Jupyter notebook, and data visualization tools. As a result, researchers can now search Pro-Quest databases, create large datasets, import data to Jupyter notebook for analysis, and download results within a day.

Computer Program Simulation Of A Quantum Turing Machine With Circuit Model, Shixin Wu

Mathematical Sciences Technical Reports (MSTR)

Molina and Watrous present a variation of the method to simulate a quantum Turing machine employed in Yao’s 1995 publication “Quantum Circuit Complexity”. We use a computer program to implement their method with linear algebra and an additional unitary operator defined to complete the details. Their method is verified to be correct on a quantum Turing machine.

A Human-Centric System For Symbolic Reasoning About Code, Megan Fowler

All Dissertations

While testing and tracing on specific input values are useful starting points for students to understand program behavior, ultimately students need to be able to reason rigorously and logically about the correctness of their code on all inputs without having to run the code. Symbolic reasoning is reasoning abstractly about code using arbitrary symbolic input values, as opposed to specific concrete inputs.

The overarching goal of this research is to help students learn symbolic reasoning, beginning with code containing simple assertions as a foundation and proceeding to code involving data abstractions and loop invariants. Toward achieving this goal, this research …

Video Games And Their Potential As Literacy Tools, Jessica Reich

University Honors Program Senior Projects

Video games are an essential part of emergent popular culture, with millions playing games every day. With how popular gaming has become, it is logical to research its full potential as a literacy tool both inside and outside the classroom. This thesis contributes to the discussion of the importance and potential of video games as a literacy tool that can be utilized educationally and through gaming at home. This thesis includes a section for gaming definitions, a literature review on research on video games and their impact on education and literacy skill development, a discussion of video game narratives, and …

Visualizing Features From Deep Neural Networks Trained On Alzheimer’S Disease And Few-Shot Learning Models For Alzheimer’S Disease, John Reeder

All Theses

Alzheimer’s disease is an incurable neural disease, usually affecting the elderly. The afflicted suffer from cognitive impairments that get dramatically worse at each stage. Previous research on Alzheimer’s disease analysis in terms of classification leveraged statistical models such as support vector machines. However, statistical models such as support vector machines train the from numerical data instead of medical images. Today, convolutional neural networks (CNN) are widely considered as the one which can achieve the state-of-the- art image classification performance. However, due to their black box nature, there can be reluctance amongst medical professionals for their use. On the other hand, …

Local Feature Selection For Multiple Instance Learning With Applications., Aliasghar Shahrjooihaghighi

Electronic Theses and Dissertations

Feature selection is a data processing approach that has been successfully and effectively used in developing machine learning algorithms for various applications. It has been proven to effectively reduce the dimensionality of the data and increase the accuracy and interpretability of machine learning algorithms. Conventional feature selection algorithms assume that there is an optimal global subset of features for the whole sample space. Thus, only one global subset of relevant features is learned. An alternative approach is based on the concept of Local Feature Selection (LFS), where each training sample can have its own subset of relevant features. Multiple Instance …

Let's Read: Designing A Smart Display Application To Support Codas When Learning Spoken Language, Katie Rodeghiero, Yingying Yuki Chen, Annika M. Hettmann, Franceli L. Cibrian

Engineering Faculty Articles and Research

Hearing children of Deaf adults (CODAs) face many challenges including having difficulty learning spoken languages, experiencing social judgment, and encountering greater responsibilities at home. In this paper, we present a proposal for a smart display application called Let's Read that aims to support CODAs when learning spoken language. We conducted a qualitative analysis using online community content in English to develop the first version of the prototype. Then, we conducted a heuristic evaluation to improve the proposed prototype. As future work, we plan to use this prototype to conduct participatory design sessions with Deaf adults and CODAs to evaluate the …

Feel And Touch: A Haptic Mobile Game To Assess Tactile Processing, Ivonne Monarca, Monica Tentori, Franceli L. Cibrian

Engineering Faculty Articles and Research

Haptic interfaces have great potential for assessing the tactile processing of children with Autism Spectrum Disorder (ASD), an area that has been under-explored due to the lack of tools to assess it. Until now, haptic interfaces for children have mostly been used as a teaching or therapeutic tool, so there are still open questions about how they could be used to assess tactile processing of children with ASD. This article presents the design process that led to the development of Feel and Touch, a mobile game augmented with vibrotactile stimuli to assess tactile processing. Our feasibility evaluation, with 5 children …

Cognizant Composites: Seamless Integration Of Circuitry And Sensors Into Structural Composites, Reuben Fresquez

Computer Science ETDs

This thesis describes a set of novel techniques for embedding sensors, circuitry, and electronics into structural composites. I leverage recent developments in human computer interaction to create sensors and circuitry that are seamlessly incorporated into structural composites. I fabricate bend and compression sensors, along with circuitry, from textiles, which enables me to add electronic capabilities without impacting the composite’s structural integrity. I describe the construction of these “cognizant composites” and demonstrate their functionality. I also explore techniques for embedding standard electronic components, including microcontrollers, into structural composites. Potential applications of this technology include buildings that can warn occupants if load-bearing …

Facilitating Heuristic Evaluation For Novice Evaluators, Anas Abulfaraj

College of Computing and Digital Media Dissertations

Heuristic evaluation (HE) is one of the most widely used usability evaluation methods. The reason for its popularity is that it is a discount method, meaning that it does not require substantial time or resources, and it is simple, as evaluators can evaluate a system guided by a set of usability heuristics. Despite its simplicity, a major problem with HE is that there is a significant gap in the quality of results produced by expert and novice evaluators. This gap has made some scholars question the usefulness of the method as they claim that the evaluation results are a product …

Pre-Earthquake Ionospheric Perturbation Identification Using Cses Data Via Transfer Learning, Pan Xiong, Cheng Long, Huiyu Zhou, Roberto Battiston, Angelo De Santis, Dimitar Ouzounov, Xuemin Zhang, Xuhui Shen

Mathematics, Physics, and Computer Science Faculty Articles and Research

During the lithospheric buildup to an earthquake, complex physical changes occur within the earthquake hypocenter. Data pertaining to the changes in the ionosphere may be obtained by satellites, and the analysis of data anomalies can help identify earthquake precursors. In this paper, we present a deep-learning model, SeqNetQuake, that uses data from the first China Seismo-Electromagnetic Satellite (CSES) to identify ionospheric perturbations prior to earthquakes. SeqNetQuake achieves the best performance [F-measure (F1) = 0.6792 and Matthews correlation coefficient (MCC) = 0.427] when directly trained on the CSES dataset with a spatial window centered on the earthquake epicenter with the Dobrovolsky …

Improving Accurate Candidates For Missing Data Using Benefit Performance Of (Ml-Som), Abeer Abdullah Al-Mohdar, Mohamed Abdullah Bamatraf

Hadhramout University Journal of Natural & Applied Sciences

Missing data is one of the major challenges in extracting and analyzing knowledge from datasets. The performance of training quality was affected by the appearance of missing data in a dataset. For this reason, there is a need for a quick and reliable method to find possible solutions in order to provide an accurate system. Therefore, the previous studies provided robust ability of Self Organizing Map (SOM) algorithm to deal with the missing values [6, 20]. However, it has a drawback such as an error rate(ERR) in the missing values that increase huge dataset. This study is mainly based on …

Comparing The Popularity Of Testing Careers Among Canadian, Indian, Chinese, And Malaysian Students, Luiz Fernando Capretz, Pradeep Waychal, Jingdong Jia, Shuib Basri

Electrical and Computer Engineering Publications

This study attempts to understand motivators and de-motivators that influence the decisions of software students to take up and sustain software testing careers across four different countries, Canada, India, China, and Malaysia. Towards that end, we have developed a cross-sectional, but simple, survey-based instrument. In this study we investigated how software engineering and computer science students perceive and value what they do and their environmental settings. This study found that very few students are keen to take up software testing careers - why is this happening with such an important task in the software life cycle? The common advantages of …

Transfer-Learned Pruned Deep Convolutional Neural Networks For Efficient Plant Classification In Resource-Constrained Environments, Martinson Ofori

Masters Theses & Doctoral Dissertations

Traditional means of on-farm weed control mostly rely on manual labor. This process is time-consuming, costly, and contributes to major yield losses. Further, the conventional application of chemical weed control can be economically and environmentally inefficient. Site-specific weed management (SSWM) counteracts this by reducing the amount of chemical application with localized spraying of weed species. To solve this using computer vision, precision agriculture researchers have used remote sensing weed maps, but this has been largely ineffective for early season weed control due to problems such as solar reflectance and cloud cover in satellite imagery. With the current advances in artificial …

The Forestecology R Package For Fitting And Assessing Neighborhood Models Of The Effect Of Interspecific Competition On The Growth Of Trees, Albert Y. Kim, David N. Allen, Simon P. Couch

Statistical and Data Sciences: Faculty Publications

Neighborhood competition models are powerful tools to measure the effect of interspecific competition. Statistical methods to ease the application of these models are currently lacking. We present the forestecology package providing methods to (a) specify neighborhood competition models, (b) evaluate the effect of competitor species identity using permutation tests, and (cs) measure model performance using spatial cross-validation. Following Allen and Kim (PLoS One, 15, 2020, e0229930), we implement a Bayesian linear regression neighborhood competition model. We demonstrate the package's functionality using data from the Smithsonian Conservation Biology Institute's large forest dynamics plot, part of the ForestGEO global network of research …

Facilitating Team-Based Data Science: Lessons Learned From The Dsc-Wav Project, Chelsey Legacy, Andrew Zieffler, Benjamin S. Baumer, Valerie Barr, Nicholas J. Horton

Statistical and Data Sciences: Faculty Publications

While coursework provides undergraduate data science students with some relevant analytic skills, many are not given the rich experiences with data and computing they need to be successful in the workplace. Additionally, students often have limited exposure to team-based data science and the principles and tools of collaboration that are encountered outside of school. In this paper, we describe the DSC-WAV program, an NSF-funded data science workforce development project in which teams of undergraduate sophomores and juniors work with a local non-profit organization on a data-focused problem. To help students develop a sense of agency and improve confidence in their …

Masked Face Analysis Via Multi-Task Deep Learning, Vatsa S. Patel, Zhongliang Nie, Trung-Nghia Le, Tam Van Nguyen

Computer Science Faculty Publications

Face recognition with wearable items has been a challenging task in computer vision and involves the problem of identifying humans wearing a face mask. Masked face analysis via multi-task learning could effectively improve performance in many fields of face analysis. In this paper, we propose a unified framework for predicting the age, gender, and emotions of people wearing face masks. We first construct FGNET-MASK, a masked face dataset for the problem. Then, we propose a multi-task deep learning model to tackle the problem. In particular, the multi-task deep learning model takes the data as inputs and shares their weight to …

Internet Of Things Software And Hardware Architectures And Their Impacts On Forensic Investigations: Current Approaches And Challenges, Abel Alex Boozer, Arun John, Tathagata Mukherjee

Journal of Digital Forensics, Security and Law

The never-before-seen proliferation of interconnected low-power computing devices, patently dubbed the Internet of Things (IoT), is revolutionizing how people, organizations, and malicious actors interact with one another and the Internet. Many of these devices collect data in different forms, be it audio, location data, or user commands. In civil or criminal nature investigations, the data collected can act as evidence for the prosecution or the defense. This data can also be used as a component of cybersecurity efforts. When data is extracted from these devices, investigators are expected to do so using proven methods. Still, unfortunately, given the heterogeneity in …

Infer: An R Package For Tidyverse-Friendly Statistical Inference, Simon P. Couch, Andrew P. Bray, Chester Ismay, Evgeni Chasnovski, B. Baumer, Mine Cetinkaya-Rundel

Statistical and Data Sciences: Faculty Publications

infer implements an expressive grammar to perform statistical inference that adheres to the tidyverse design framework (Wickham et al., 2019). Rather than providing methods for specific statistical tests, this package consolidates the principles that are shared among common hypothesis tests and confidence intervals into a set of four main verbs (functions), supplemented with many utilities to visualize and extract value from their outputs.

The Development Of Teaching Case Studies To Explore Ethical Issues Associated With Computer Programming, Michael Collins, Damian Gordon, Dympna O'Sullivan

Conference papers

In the past decade software products have become pervasive in many aspects of people’s lives around the world. Unfortunately, the quality of the experience an individual has interacting with that software is dependent on the quality of the software itself, and it is becoming more and more evident that many large software products contain a range of issues and errors, and these issues are not known to the developers of these systems, and they are unaware of the deleterious impacts of those issues on the individuals who use these systems. The authors of this paper are developing a new digital …

An Empirical Study Of Thermal Attacks On Edge Platforms, Tyler Holmes

Symposium of Student Scholars

Cloud-edge systems are vulnerable to thermal attacks as the increased energy consumption may remain undetected, while occurring alongside normal, CPU-intensive applications. The purpose of our research is to study thermal effects on modern edge systems. We also analyze how performance is affected from the increased heat and identify preventative measures. We speculate that due to the technology being a recent innovation, research on cloud-edge devices and thermal attacks is scarce. Other research focuses on server systems rather than edge platforms. In our paper, we use a Raspberry Pi 4 and a CPU-intensive application to represent thermal attacks on cloud-edge systems. …

Energy Saving On Edges: State-Of-The-Art And Future Directions, Kousalya Banka

Symposium of Student Scholars

Internet of Things (IoT) comprises a set of devices that are interconnected ranging from our daily used objects to advanced networked devices. It is a constantly evolving phenomenon as the number of devices owned by the regular user is increasing at a rapid rate. These devices are used for various reasons such as social networking, monitoring, performing complex operations and with the increase of advanced technologies, they demand more energy to perform such tasks. Cloud computing enables these communications to seamlessly perform complex tasks in a cloud environment but utilizing these resources properly to perform at the best is the …

Enhancing Microbiome Host Disease Prediction With Variational Autoencoders, Celeste Manughian-Peter

Computational and Data Sciences (MS) Theses

Advancements in genetic sequencing methods for microbiomes in recent decades have permitted the collection of taxonomic and functional profiles of microbial communities, accelerating the discovery of the functional aspects of the microbiome and generating an increased interest among clinicians in applying these techniques with patients. This advancement has coincided with software and hardware improvements in the field of machine learning and deep learning. Combined, these advancements implicate further potential for progress in disease diagnosis and treatment in humans. The ability to classify a human microbiome profile into a disease category, and additionally identify the differentiating factors within the profile between …

Automated Parsing Of Flexible Molecular Systems Using Principal Component Analysis And K-Means Clustering Techniques, Matthew J. Nwerem

Computational and Data Sciences (MS) Theses

Computational investigation of molecular structures and reactions of biological and pharmaceutical interests remains a grand scientific challenge due to the size and conformational flexibility of these systems. The work requires parsing and analyzing thousands of conformations in each molecular state for meaningful chemical information and subjecting the ensemble to costly quantum chemical calculations. The current status quo typically involves a manual process where the investigator must look at each conformation, separating each into structural families. This process is time-intensive and tedious, making this process infeasible in some cases, and limiting the ability of theoreticians to study these systems. However, the …

Verification Of Piecewise Deep Neural Networks: A Star Set Approach With Zonotope Pre-Filter, Hoang-Dung Tran, Neelanjana Pal, Diego Manzanas Lopez, Patrick Musau, Xiaodong Yang, Luan Viet Nguyen, Weiming Xiang, Stanley Bak, Taylor T. Johnson

Computer Science Faculty Publications

Verification has emerged as a means to provide formal guarantees on learning-based systems incorporating neural network before using them in safety-critical applications. This paper proposes a new verification approach for deep neural networks (DNNs) with piecewise linear activation functions using reachability analysis. The core of our approach is a collection of reachability algorithms using star sets (or shortly, stars), an effective symbolic representation of high-dimensional polytopes. The star-based reachability algorithms compute the output reachable sets of a network with a given input set before using them for verification. For a neural network with piecewise linear activation functions, our approach can …

Identification Of Chemical Structures And Substructures Via Deep Q-Learning And Supervised Learning Of Ftir Spectra, Joshua D. Ellis

Graduate Theses/Dissertations

Fourier-transform infrared (FTIR) spectra of organic compounds can be used to compare and identify compounds. A mid-FTIR spectrum gives absorbance values of a compound over the 400-4000 cm^-1 range. Spectral matching is the process of comparing the spectral signature of two or more compounds and returning a value for the similarity of the compounds based on how closely their spectra match. This process is commonly used to identify an unknown compound by searching for its spectrum’s closes match in a database of known spectra. A major limitation of this process is that it can only be used to identify …