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Articles 241 - 270 of 1665

Full-Text Articles in Computer Sciences

A Fast Framework For Generating Radioactive Mixture Spectra And Its Application To Remote High-Performance Mixture Identification, Chiman Kwan, Bulent Ayhan, Adam Stavola, Kazi Aminul Islam, Hongfang Zhang, Jiang Li Jan 2025

A Fast Framework For Generating Radioactive Mixture Spectra And Its Application To Remote High-Performance Mixture Identification, Chiman Kwan, Bulent Ayhan, Adam Stavola, Kazi Aminul Islam, Hongfang Zhang, Jiang Li

Electrical & Computer Engineering Faculty Publications

Remote detection of radioactive materials in mixtures using handheld or portal detectors remains a challenge because of factors such as low concentration, environmental interference, sensor noise, and other complications. This work introduces a fast framework for generating realistic mixture spectra. Moreover, we present mixture isotope identification using data generated by the fast framework. Researchers have examined a range of conventional and recent algorithms within the fields of machine learning and deep learning. An application to uranium enrichment-level prediction has been included. Extensive simulation experiments validated the efficacy of the proposed framework.


Data-Driven Gradient Optimization For Field Emission Management In A Superconducting Radio-Frequency Linac, S. Goldenberg, K. Ahammed, A. Carpenter, J. Li, R. Suleiman, C. Tennant Jan 2025

Data-Driven Gradient Optimization For Field Emission Management In A Superconducting Radio-Frequency Linac, S. Goldenberg, K. Ahammed, A. Carpenter, J. Li, R. Suleiman, C. Tennant

Electrical & Computer Engineering Faculty Publications

Field emission can cause significant problems in superconducting radio-frequency linear accelerators (linacs). When cavity gradients are pushed higher, radiation levels within the linacs may rise exponentially, causing degradation of many nearby systems. This research aims to utilize machine learning with uncertainty quantification to predict radiation levels at multiple locations throughout the linacs and ultimately optimize cavity gradients to reduce field emission-induced radiation while maintaining the total linac energy gain necessary for the experimental physics program. The optimized solutions show over 40% reductions for both neutron and gamma radiation from the standard operational settings.


High-Fidelity Soh Prediction In Lithium-Ion Batteries Using Hybrid Ml Networks, Shafiyee Islam, Gon Namkoong Jan 2025

High-Fidelity Soh Prediction In Lithium-Ion Batteries Using Hybrid Ml Networks, Shafiyee Islam, Gon Namkoong

Electrical & Computer Engineering Faculty Publications

Accurate and efficient prediction of lithium-ion battery state of health (SOH) is critical for ensuring reliability in electric vehicles, grid storage, and aerospace systems. Traditional SOH estimation methods often struggle with nonlinear degradation behaviors and lack sensitivity to subtle electrochemical signals, limiting their real-world deployment. To address these challenges, this study examines hybrid deep learning models that integrate differential capacity (dQ/dV) analysis to enhance predictive accuracy. Four hybrid architectures - hybrid CNN-LSTM multihead, CNN extractor for LSTM, DNN-LSTM, and DNN Bi-LSTM - were developed and evaluated using the NASA randomized battery usage dataset, offering a realistic benchmark under diverse operational …


Advances In Battery Modeling And Management Systems: A Comprehensive Review Of Techniques, Challenges, And Future Perspectives, Seyed Saeed Madani, Yasmin Shabeer, Ananthu Shibu Nair, Michael Fowler, Satyam Panchal, Carlos Ziebert, Hicham Chaoui, Shi Xue Dou, Khay See, Saad Mekhilef, Françios Allard Jan 2025

Advances In Battery Modeling And Management Systems: A Comprehensive Review Of Techniques, Challenges, And Future Perspectives, Seyed Saeed Madani, Yasmin Shabeer, Ananthu Shibu Nair, Michael Fowler, Satyam Panchal, Carlos Ziebert, Hicham Chaoui, Shi Xue Dou, Khay See, Saad Mekhilef, Françios Allard

Electrical & Computer Engineering Faculty Publications

Energy storage systems (ESSs) and electric vehicle (EV) batteries depend on battery management systems (BMSs) for their longevity, safety, and effectiveness. Battery modeling is crucial to the operation of BMSs, as it enhances temperature control, fault detection, and state estimation, thereby maximizing efficiency and preventing malfunctions. This paper thoroughly examines the most recent advancements in battery and BMS modeling, including data-driven, thermal, and electrochemical methods. Advanced modeling approaches are explored, including physics-based models that incorporate mechanical stress and aging effects, as well as artificial intelligence (AI)-driven state estimation. New technologies that facilitate data-driven decision-making, real-time monitoring, and simplified systems include …


Enhancing Cyber Situational Awareness Through Dynamic Adaptive Symbology: The Dass Framework, Nicholas Macrino, Sergio Pallas Enguita, Chung-Hao Chen Jan 2025

Enhancing Cyber Situational Awareness Through Dynamic Adaptive Symbology: The Dass Framework, Nicholas Macrino, Sergio Pallas Enguita, Chung-Hao Chen

Electrical & Computer Engineering Faculty Publications

The static nature of traditional military symbology, such as MIL-STD-2525D, hinders effective real-time threat detection and response in modern cybersecurity operations. This research introduces the Dynamic Adaptive Symbol System (DASS), a novel framework enhancing cyber situational awareness in military and enterprise environments. The DASS addresses static symbology limitations by employing a modular Python 3.10 architecture that uses machine learning-driven threat detection to dynamically adapt symbol visualization based on threat severity and context. Empirical testing assessed the DASS against a MIL-STD-2525D baseline using active cybersecurity professionals. Results show that the DASS significantly improves threat identification rates by 30% and reduces response …


Ai-Based Steganography Method To Enhance The Information Security Of Hidden Messages In Digital Images, Nhi Do Ngoc Huynh, Jiajun Jiang, Chung-Hao Chen, Wen-Chao Yang Jan 2025

Ai-Based Steganography Method To Enhance The Information Security Of Hidden Messages In Digital Images, Nhi Do Ngoc Huynh, Jiajun Jiang, Chung-Hao Chen, Wen-Chao Yang

Electrical & Computer Engineering Faculty Publications

With the increasing sophistication of Artificial Intelligence (AI), traditional digital steganography methods face a growing risk of being detected and compromised. Adversarial attacks, in particular, pose a significant threat to the security and robustness of hidden information. To address these challenges, this paper proposes a novel AI-based steganography framework designed to enhance the security of concealed messages within digital images. Our approach introduces a multi-stage embedding process that utilizes a sequence of encoder models, including a base encoder, a residual encoder, and a dense encoder, to create a more complex and secure hiding environment. To further improve robustness, we integrate …


Machine Learning Predicting Acute Pain And Opioid Dose In Radiation Treated Oropharyngeal Cancer Patients, Vivian Salama, Laia Humbert-Vidan, Brandon Godinich, Kareem A Wahid, Dina M Elhabashy, Mohamed A Naser, Renjie He, Abdallah S R Mohamed, Ariana J Sahli, Katherine A Hutcheson, Gary Brandon Gunn, David I Rosenthal, Clifton D Fuller, Amy C Moreno Jan 2025

Machine Learning Predicting Acute Pain And Opioid Dose In Radiation Treated Oropharyngeal Cancer Patients, Vivian Salama, Laia Humbert-Vidan, Brandon Godinich, Kareem A Wahid, Dina M Elhabashy, Mohamed A Naser, Renjie He, Abdallah S R Mohamed, Ariana J Sahli, Katherine A Hutcheson, Gary Brandon Gunn, David I Rosenthal, Clifton D Fuller, Amy C Moreno

Faculty, Staff and Student Publications

Introduction: Acute pain is common among oral cavity/oropharyngeal cancer (OCC/OPC) patients undergoing radiation therapy (RT). This study aimed to predict acute pain severity and opioid doses during RT using machine learning (ML), facilitating risk-stratification models for clinical trials.

Methods: A retrospective study examined 900 OCC/OPC patients treated with RT during 2017-2023. Pain intensity was assessed using NRS (0-none, 10-worst) and total opioid doses were calculated using morphine equivalent daily dose (MEDD) conversion factors. Analgesics efficacy was assessed using combined pain intensity and total MEDD. ML predictive models were developed and validated, including Logistic Regression (LR), Support Vector Machine (SVM), Random …


Anomaly Detection Of Seasonal Vessel Activity, Travis Rybicki Jan 2025

Anomaly Detection Of Seasonal Vessel Activity, Travis Rybicki

Theses: Doctorates and Masters

Monitoring maritime traffic is essential for ensuring the safety of vessels, safeguarding transported goods or persons, and preventing illicit or hazardous activity at sea. Increasingly, researchers have explored data-driven approaches to model expected vessel behaviour and detect deviations or anomalies. These anomalies—such as course deviations, unauthorised area entries, or unexpected operational patterns—can indicate emergencies, regulatory breaches, or unlawful intent. Data broadcast by vessels provides a valuable resource for such analyses; however, the inherent complexity and context-dependency of maritime behaviour present persistent modelling challenges. One critical yet underutilised factor in this context is seasonality. For certain vessel types, for example, fishing …


Land Target Detection Algorithm In Remote Sensing Images Based On Deep Learning, Wenyi Hu, Xiaomeng Jiang, Jiawei Tian, Shitong Ye, Shan Liu Jan 2025

Land Target Detection Algorithm In Remote Sensing Images Based On Deep Learning, Wenyi Hu, Xiaomeng Jiang, Jiawei Tian, Shitong Ye, Shan Liu

Electrical & Computer Engineering Faculty Publications

Remote sensing technology plays a crucial role across various sectors, such as meteorological monitoring, city planning, and natural resource exploration. A critical aspect of remote sensing image analysis is land target detection, which involves identifying and classifying land-based objects within satellite or aerial imagery. However, despite advancements in both traditional detection methods and deep-learning-based approaches, detecting land targets remains challenging, especially when dealing with small and rotated objects that are difficult to distinguish. To address these challenges, this study introduces an enhanced model, YOLOv5s-CACSD, which builds upon the YOLOv5s framework. Our model integrates the channel attention (CA) mechanism, CARAFE, and …


Analyzing Visual Attention In Virtual Crime Scene Investigations Using Eye-Tracking And Vr: Insights For Cognitive Modeling, Wen-Chao Yang, Chih-Hung Shih, Jiajun Jiang, Sergio Pallas Enguita, Chung-Hao Chen Jan 2025

Analyzing Visual Attention In Virtual Crime Scene Investigations Using Eye-Tracking And Vr: Insights For Cognitive Modeling, Wen-Chao Yang, Chih-Hung Shih, Jiajun Jiang, Sergio Pallas Enguita, Chung-Hao Chen

Electrical & Computer Engineering Faculty Publications

Understanding human perceptual strategies in high-stakes environments, such as crime scene investigations, is essential for developing cognitive models that reflect expert decision-making. This study presents an immersive experimental framework that utilizes virtual reality (VR) and eye-tracking technologies to capture and analyze visual attention during simulated forensic tasks. A 360° panoramic crime scene, constructed using the Nikon KeyMission 360 camera, was integrated into a VR system with HTC Vive and Tobii Pro eye-tracking components. A total of 46 undergraduate students aged 19 to 24–23, from the National University of Singapore in Singapore and 23 from the Central Police University in Taiwan—participated …


Machine Learning Models Leveraging Patient-Similarity And Clinical Temporality For Disease Prognoses, Ahmad F. Al Musawi Jan 2025

Machine Learning Models Leveraging Patient-Similarity And Clinical Temporality For Disease Prognoses, Ahmad F. Al Musawi

Theses and Dissertations

Electronic Health Records (EHRs) constitute a comprehensive and high-dimensional repository of clinical data, encompassing a wide array of patient-level information such as diagnoses, procedures, medications, laboratory results, and unstructured clinical narratives. These data hold immense potential for advancing predictive modeling in healthcare, including tasks such as disease progression modeling, hospital readmission prediction, and length of stay (LoS) estimation. However, the intrinsic complexity of EHR data—manifested in its heterogeneity, sparsity, and temporal dynamics—poses significant analytical challenges that limit the generalizability and interpretability of conventional machine learning models. Recent methodological advancements in deep learning and graph-based learning, particularly Graph Neural Networks (GNNs), …


Delivery Of Medical Supplies To Remote Locations Via Unmanned Aerial Vehicles: Approaches, Challenges, And Solutions, Meshari Aljohani, Ravi Mukkamala, Stephanie Olariu Jan 2025

Delivery Of Medical Supplies To Remote Locations Via Unmanned Aerial Vehicles: Approaches, Challenges, And Solutions, Meshari Aljohani, Ravi Mukkamala, Stephanie Olariu

Computer Science Faculty Publications

Unmanned Aerial Vehicles (UAVs) are becoming more important in improving healthcare logistics, in particular due to their cost effectiveness, minimized risk, and versatile operational capabilities. This study explores the deployment of autonomous UAVs to deliver medical supplies to remote areas. Advances in ledger technology, smart contracts, and machine learning have transformed tasks previously managed by human teams or manually controlled UAVs into fully autonomous missions. We present a comprehensive analysis of the challenges and initial solutions vital for the effective use of autonomous UAVs in the delivery of medical supplies. In addition, we propose a machine-learning model to optimize UAV …


Human Perception Of Ai Capabilities At Classifying Perturbed Roadway Signs, Katherine R. Garcia, Jing Chen, Yanru Xiao, Scott Mishler, Cong Wang, Bin Hu Jan 2025

Human Perception Of Ai Capabilities At Classifying Perturbed Roadway Signs, Katherine R. Garcia, Jing Chen, Yanru Xiao, Scott Mishler, Cong Wang, Bin Hu

Computer Science Faculty Publications

Artificial Intelligence (AI) is crucial to numerous functions required for driving automation systems, including the computer vision techniques used to detect the roadway environment and make real-time decisions. However, the images used as inputs to the AI system may be maliciously perturbed, or manipulated, causing the AI system to make an incorrect classification. In this study, we examined humans’ perception of the AI’s computer vision capability of classifying various road sign images, including the original images, images with two different types of malicious attacks, and images that are scrambled randomly at the pixel level. Our results showed that participants rated …


Coldstartcpi: Induced-Fit Theory-Guided Dti Predictive Model With Improved Generalization Performance, Qichang Zhao, Haochen Zhao, Linyuan Gao, Kai Zheng, Yajie Li, Qiao Ling, Jing Tang, Yaohang Li, Jianxin Wang Jan 2025

Coldstartcpi: Induced-Fit Theory-Guided Dti Predictive Model With Improved Generalization Performance, Qichang Zhao, Haochen Zhao, Linyuan Gao, Kai Zheng, Yajie Li, Qiao Ling, Jing Tang, Yaohang Li, Jianxin Wang

Computer Science Faculty Publications

Predicting compound-protein interactions (CPIs) plays a crucial role in drug discovery. Traditional methods, based on the key-lock theory and rigid docking, often fail with novel compounds and proteins due to their inability to account for molecular flexibility and the high sparsity of CPI data. Here, we introduce ColdstartCPI, a framework inspired by induced-fit theory, which leverages unsupervised pre-training features and a Transformer module to learn both compound and protein characteristics. ColdstartCPI treats proteins and compounds as flexible molecules during inference, aligning with biological insights. It outperforms state-of-the-art sequence-based models, particularly for unseen compounds and proteins, and shows strong generalization capability …


Optiselect And Enshap: Integrating Machine Learning And Game Theory For Ischemic Stroke Prediction, Pritam Chakraborty, Anjan Bandyopadhyay, Sricheta Parul, Sujata Swain, Partha Sarathy Banerjee, Tapas Si, Hong Qin, Saurav Mallik Jan 2025

Optiselect And Enshap: Integrating Machine Learning And Game Theory For Ischemic Stroke Prediction, Pritam Chakraborty, Anjan Bandyopadhyay, Sricheta Parul, Sujata Swain, Partha Sarathy Banerjee, Tapas Si, Hong Qin, Saurav Mallik

Computer Science Faculty Publications

Stroke analysis using game theory and machine learning techniques. The study investigates the use of the Shapley value in predictive ischemic brain stroke analysis. Initially, preference algorithms identify the most important features in various machine learning models, including logistic regression, K-nearest neighbor, decision tree, support vector machine (linear kernel), support vector machine ( RBF kernel), neural networks, etc. For each sample, the top 3, 4, and 5 features are evaluated and selected to evaluate their performance. The Shapley value method was used to rank the models using their best four features based on their predictive capabilities. As a result, better-performing …


Ai For Nuclear Physics: The Exclaim Project, S. Liuti, D. Adams, M. Boër, G. W. Chern, M. Cuic, M. Engelhardt, G. R. Goldstein, B. Kriesten, Y. Li, H. W. Lin, M. Sievert, D. Sivers Jan 2025

Ai For Nuclear Physics: The Exclaim Project, S. Liuti, D. Adams, M. Boër, G. W. Chern, M. Cuic, M. Engelhardt, G. R. Goldstein, B. Kriesten, Y. Li, H. W. Lin, M. Sievert, D. Sivers

Computer Science Faculty Publications

An overview of the recent activity of the newly funded EXCLusives with AI and Machine learning (EXCLAIM) collaboration is presented. The main goal of the collaboration is to develop a framework to implement AI and machine learning techniques in problems emerging from the phenomenology of high energy exclusive scattering processes from nucleons and nuclei, maximizing the information that can be extracted from various sets of experimental data, while implementing theoretical constraints from lattice QCD. A specific perspective embraced by EXCLAIM is to use the methods of theoretical physics to understand the working of ML, beyond its standardized applications to physics …


Icu-Length Of Stay Prediction On Electronic Health Records Using Graph Neural Networks And Homogeneous Similarity Graphs, Ahmad F. Al Musawi, Pratip Rana, Sibtanu Raha, Joshua Braunstein, William C. Sleeman Iv, Rishabh Kapoor, Preetam Ghosh Jan 2025

Icu-Length Of Stay Prediction On Electronic Health Records Using Graph Neural Networks And Homogeneous Similarity Graphs, Ahmad F. Al Musawi, Pratip Rana, Sibtanu Raha, Joshua Braunstein, William C. Sleeman Iv, Rishabh Kapoor, Preetam Ghosh

Computer Science Faculty Publications

Predicting the length of stay (LoS) is important for hospital administration, as it helps allocate proper resources, such as bed management and hospital staffing. Patients' Electronic Health Records (EHRs) contain highly relevant data for LoS prediction; however, their integration and effective use in predictive modeling for accurately estimating LoS remain challenging. To address this, we propose a homogeneous Graph Neural Network (GNN)-based framework for predicting LoS. This method employs a comprehensive data fusion strategy based on the hospital Visit-based Similarity Graph (VSG), which integrates diverse multi-modal clinical features into a coherent, homogeneous graph representation. Next, this VSG is fed into …


Machine Learning Methods For Pattern Recognition Analysis Of Genomic And Molecular Data, Kuang Du Dec 2024

Machine Learning Methods For Pattern Recognition Analysis Of Genomic And Molecular Data, Kuang Du

Dissertations

While immune therapies achieve remarkable success in treating various cancers, only a subset of patients achieves a durable clinical response, and many exhibit innate or acquired resistance. Precision medicine aims to tailor treatments to individual patients based on specific biological markers, ensuring that each patient receives the therapy most likely to be effective. Predictive biomarkers and gene signatures offer potential for more personalized treatment strategies by identifying patients likely to benefit. Recent studies suggest that gene signatures, comprising sets of genes, hold predictive value for certain clinical variables. Typically derived from biological expert knowledge, these signatures demonstrate substantial predictive potential, …


Knowledge Diffusion In Networks Of Artificial Learners, Ehsan Beikihassan Dec 2024

Knowledge Diffusion In Networks Of Artificial Learners, Ehsan Beikihassan

Dissertations

The dissertation draws inspiration from the topic of peer learning in the social sciences and the study of information dissemination and knowledge diffusion in network science. In particular, it introduces and studies a setting involving a population or network of artificial learners, with the objective of optimizing aggregate performance measures under constraints on training resources. In this context, natural knowledge diffusion processes in networks of interacting artificial learners are studied. The term "natural" refers to processes that emulate human peer learning, where the internal state and learning processes of students remain largely opaque, and the main degree of freedom lies …


Artificial Intelligence In Fetal And Pediatric Echocardiography, Alan Wang, Tam T Doan, Charitha Reddy, Pei-Ni Jone Dec 2024

Artificial Intelligence In Fetal And Pediatric Echocardiography, Alan Wang, Tam T Doan, Charitha Reddy, Pei-Ni Jone

Faculty, Staff and Students Publications

Echocardiography is the main modality in diagnosing acquired and congenital heart disease (CHD) in fetal and pediatric patients. However, operator variability, complex image interpretation, and lack of experienced sonographers and cardiologists in certain regions are the main limitations existing in fetal and pediatric echocardiography. Advances in artificial intelligence (AI), including machine learning (ML) and deep learning (DL), offer significant potential to overcome these challenges by automating image acquisition, image segmentation, CHD detection, and measurements. Despite these promising advancements, challenges such as small number of datasets, algorithm transparency, physician comfort with AI, and accessibility must be addressed to fully integrate AI …


Artificial Intelligence-Based Methodologies For Early Diagnostic Precision And Personalized Therapeutic Strategies In Neuro-Ophthalmic And Neurodegenerative Pathologies, Rahul Kumar, Ethan Waisberg, Joshua Ong, Phani Paladugu, Dylan Amiri, Jeremy Saintyl, Jahnavi Yelamanchi, Robert Nahouraii, Ram Jagadeesan, Alireza Tavakkoli Dec 2024

Artificial Intelligence-Based Methodologies For Early Diagnostic Precision And Personalized Therapeutic Strategies In Neuro-Ophthalmic And Neurodegenerative Pathologies, Rahul Kumar, Ethan Waisberg, Joshua Ong, Phani Paladugu, Dylan Amiri, Jeremy Saintyl, Jahnavi Yelamanchi, Robert Nahouraii, Ram Jagadeesan, Alireza Tavakkoli

SKMC Student Presentations and Publications

Advancements in neuroimaging, particularly diffusion magnetic resonance imaging (MRI) techniques and molecular imaging with positron emission tomography (PET), have significantly enhanced the early detection of biomarkers in neurodegenerative and neuro-ophthalmic disorders. These include Alzheimer's disease, Parkinson's disease, multiple sclerosis, neuromyelitis optica, and myelin oligodendrocyte glycoprotein antibody disease. This review highlights the transformative role of advanced diffusion MRI techniques-Neurite Orientation Dispersion and Density Imaging and Diffusion Kurtosis Imaging-in identifying subtle microstructural changes in the brain and visual pathways that precede clinical symptoms. When integrated with artificial intelligence (AI) algorithms, these techniques achieve unprecedented diagnostic precision, facilitating early detection of neurodegeneration and …


Predictive Maintenance Analysis Of Turbofan Engine Sensor Data, Stanley A. Melkumian Dec 2024

Predictive Maintenance Analysis Of Turbofan Engine Sensor Data, Stanley A. Melkumian

The Journal of Purdue Undergraduate Research

Predictive maintenance in aviation and aerospace applications is among the most explored problems in machine learning (ML) and artificial intelligence (AI), and datasets such as NASA’s C-MAPPS turbofan engine degradation simulation data have proven invaluable, helping researchers explore numerous questions on engine performance, maintenance, and failure. The purpose of this study was to extend the current research on predicting the remaining useful life (RUL) of engines and their risk classification. Starting with simple yet under-investigated nonlinear survival and random forest models, the analysis implemented eXtreme Gradient Boosting (XGBoost) and long short-term memory (LSTM) from TensorFlow’s Keras library. For both regression …


Predicting Chaotic Systems With Quantum Echo-State Networks, Erik Connerty, Ethan N. Evans, Gerasimos Angelatos, Vignesh Narayanan Dec 2024

Predicting Chaotic Systems With Quantum Echo-State Networks, Erik Connerty, Ethan N. Evans, Gerasimos Angelatos, Vignesh Narayanan

Publications

Recent advancements in artificial neural networks have enabled impressive tasks on classical computers, but they demand significant computational resources. While quantum computing offers potential beyond classical systems, the advantages of quantum neural networks (QNNs) remain largely unexplored. In this work, we present and examine a quantum circuit (QC) that implements and aims to improve upon the classical echo-state network (ESN), a type of reservoir-based recurrent neural networks (RNNs), using quantum computers. Typically, ESNs consist of an extremely large reservoir that learns high-dimensional embeddings, enabling prediction of complex system trajectories. Quantum echo-state networks (QESNs) aim to reduce this need for prohibitively …


Alphafold2-Based Characterization Of Apo And Holo Protein Structures And Conformational Ensembles Using Randomized Alanine Sequence Scanning Adaptation: Capturing Shared Signature Dynamics And Ligand-Induced Conformational Changes, Nishank Raisinghani, Vedant Parikh, Brandon Foley, Gennady M. Verkhivker Dec 2024

Alphafold2-Based Characterization Of Apo And Holo Protein Structures And Conformational Ensembles Using Randomized Alanine Sequence Scanning Adaptation: Capturing Shared Signature Dynamics And Ligand-Induced Conformational Changes, Nishank Raisinghani, Vedant Parikh, Brandon Foley, Gennady M. Verkhivker

Mathematics, Physics, and Computer Science Faculty Articles and Research

Proteins often exist in multiple conformational states, influenced by the binding of ligands or substrates. The study of these states, particularly the apo (unbound) and holo (ligand-bound) forms, is crucial for understanding protein function, dynamics, and interactions. In the current study, we use AlphaFold2, which combines randomized alanine sequence masking with shallow multiple sequence alignment subsampling to expand the conformational diversity of the predicted structural ensembles and capture conformational changes between apo and holo protein forms. Using several well-established datasets of structurally diverse apo-holo protein pairs, the proposed approach enables robust predictions of apo and holo structures and conformational ensembles, …


Logarithmic Number System Is Optimal For Ai Computations: Theoretical Explanation Of Empirical Success, Olga Kosheleva, Vladik Kreinovich, Christoph Lauter, Kristalys Ruiz-Rohena Dec 2024

Logarithmic Number System Is Optimal For Ai Computations: Theoretical Explanation Of Empirical Success, Olga Kosheleva, Vladik Kreinovich, Christoph Lauter, Kristalys Ruiz-Rohena

Departmental Technical Reports (CS)

Everyone knows the success story of machine-learning AI. However, the current AI tools are not perfect. We know how to make them better: every time we increase the amount of computations by the order of magnitude, we get a drastic improvement in the performance of the resulting machine learning tools. Training modern AI system requires a tremendous amount of computations -- that already take a lot of time. So, to increase the number of computations, we need to make each computation step faster. One way to do that is to use low-precision arithmetic operations, e.g., with 1 byte per real …


A Machine Learning Approach To Multifactorial Modeling Of Episodic Memory Performance, Evan Fletcher, Marianne Chanti-Ketterl, Emily Hokett, Yi Lor, Umesh Venkatesan, Paola Gilsanz, Rachel Whitmer, Ruijia Chen, Kristen George, Zvinka Zlatar Dec 2024

A Machine Learning Approach To Multifactorial Modeling Of Episodic Memory Performance, Evan Fletcher, Marianne Chanti-Ketterl, Emily Hokett, Yi Lor, Umesh Venkatesan, Paola Gilsanz, Rachel Whitmer, Ruijia Chen, Kristen George, Zvinka Zlatar

Moss-Magee Rehabilitation Papers

BACKGROUND: Neurocognitive health is influenced by multiple modifiable and non-modifiable lifestyle factors. Machine learning tools offer a promising approach to better understand complex models of cognitive function. We used extreme gradient boosting (XG Boost), an algorithm of decision-tree modeling, to analyze the association between 15 late-life lifestyle and demographic factors with episodic memory performance. METHOD: Our dataset consisted of 2247 participants from the KHANDLE and STAR cohorts. Participants included 841 men and 1406 women, an ethnoracial diversity of 413 Asian, 987 Black, 349 Latinx, and 496 White adults with age range 54-90 (mean = 74). XG Boost models of continuous …


Llm Potentiality And Awareness: A Position Paper From The Perspective Of Trustworthy And Responsible Ai Modeling, Iqbal H. Sarker Dec 2024

Llm Potentiality And Awareness: A Position Paper From The Perspective Of Trustworthy And Responsible Ai Modeling, Iqbal H. Sarker

Research outputs 2022 to 2026

Large language models (LLMs) are an exciting breakthrough in the rapidly growing field of artificial intelligence (AI), offering unparalleled potential in a variety of application domains such as finance, business, healthcare, cybersecurity, and so on. However, concerns regarding their trustworthiness and ethical implications have become increasingly prominent as these models are considered black-box and continue to progress. This position paper explores the potentiality of LLM from diverse perspectives as well as the associated risk factors with awareness. Towards this, we highlight not only the technical challenges but also the ethical implications and societal impacts associated with LLM deployment emphasizing fairness, …


The Evolution Of Artificial Intelligence In Gaming, Aditi Jorapur Dec 2024

The Evolution Of Artificial Intelligence In Gaming, Aditi Jorapur

ART 108: Introduction to Games Studies

No abstract provided.


Toward A Globally Lunar Calendar: A Machine Learning-Driven Approach For Crescent Moon Visibility Prediction, Samia Loucif, Murad Al-Rajab, Raed Abu Zitar, Mahmoud Rezk Dec 2024

Toward A Globally Lunar Calendar: A Machine Learning-Driven Approach For Crescent Moon Visibility Prediction, Samia Loucif, Murad Al-Rajab, Raed Abu Zitar, Mahmoud Rezk

All Works

This paper presents a comprehensive approach to harmonizing lunar calendars across different global regions, addressing the long-standing challenge of variations in new crescent Moon sightings that mark the beginning of lunar months. We propose a machine learning (ML)-based framework to predict the visibility of the new crescent Moon, representing a significant advancement toward a globally unified lunar calendar. Our study utilized a dataset covering various countries globally, making it the first to analyze all 12 lunar months over a span of 13 years. We applied a wide array of ML algorithms and techniques. These techniques included feature selection, hyperparameter tuning, …


Domain-Specific Machine Learning Approaches For Geospatial Problems, Shine Bedi Dec 2024

Domain-Specific Machine Learning Approaches For Geospatial Problems, Shine Bedi

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

This dissertation explores novel algorithms for complex geospatial problems at the intersection of environmental, social, and computational sciences. Emphasizing the unique challenges of the geospatial domain, particularly the deviation from the independent and identical distribution (IID) assumption, the research spans various methodologies across different domains, demonstrating the benefits of specialized approaches in spatial analysis.

First, we show that machine learning techniques can be effectively used in environmental modeling, which often has severe class imbalance challenges. Using artificial neural networks (ANN), support vector machines (SVM), and extreme gradient boosting (XGB) and techniques to address class imbalance provides insights into groundwater quality …