Computer Sciences Commons^™

Advanced Prediction Of Events And Temporal Expressions In Medical Text Using The Jena Api: Integrating Ontologies And Deep Learning, Hafida Tiaiba, Lyazid Sabri, Okba Kazar

Turkish Journal of Electrical Engineering and Computer Sciences

The automatic recognition of medical concepts and temporal expressions in narrative clinical text enhances the utility of electronic health records (EHRs) and supports clinical decision-making and research. However, challenges arise due to the complexity of medical language, ambiguity of terms, and variability in expression. To address these issues, the use of medical ontologies significantly improves data management in healthcare. A novel approach integrates various medical ontologies covering drugs, symptoms, diseases, anatomy, disease drivers, and food, and with convolutional neural networks (CNNs) -including Standard, Transposed, and Separable convolution models (CONSEPTR)- to extract both medical events (e.g., clinical departments, treatments, problems) and …

Classiffication Of Mild Cognitive Impairment Based On Dynamic Functional Connectivity Using Spatio-Temporal Transformer, Jing Zhang, Yanjun Lyu, Xiaowei Yu, Lu Zhang, Chao Cao, Tong Chen, Minheng Chen, Yan Zhuang, Tianming Liu, Dajiang Zhu

Computer Science Faculty Research & Creative Works

Dynamic functional connectivity (dFC) using resting-state functional magnetic resonance imaging (rs-fMRI) is an advanced technique for capturing the dynamic changes of neural activities and can be very useful in the studies of brain diseases such as Alzheimer's disease (AD). Yet, existing studies have not fully leveraged the sequential information embedded within dFC that can potentially provide valuable information when identifying brain conditions. In this paper, we propose a novel framework that jointly learns the embedding of both spatial and temporal information within dFC based on the transformer architecture. Specifically, we first construct dFC networks from rs-fMRI data through a sliding …

An Effective Image Despeckling And Reconstruction Approach Using U-Net Based Model And Comparative Analysis, M. S. Gokmen, Bilgehan Arslan, C. Bumgardner, Abdullah-Al-Zubaer Imran

Computer Science Faculty Publications

U-Net-based deep learning models have garnered significant attention in recent years due to their strong denoising capabilities in image restoration tasks. This study critically evaluates both the strengths and limitations of these models, with a particular focus on their architectural design and constituent components, in an effort to further advance denoising performance. Based on the insights derived from these analyses, a novel architecture–termed U-Tunnel-Net–is proposed. The model is trained on the UNS and Waterloo datasets, each augmented with Rayleigh-distributed speckle noise at four distinct intensity levels (σ = 0.10, 0.25, 0.50, and 0.75), and evaluated on the UNS, BSD68, and …

Detection Of Data Leakage And Disruption Of Covert Timing Channel In Secure Drone Communication Using Machine And Deep Learning, Jonathan Walatkiewicz

Master's Theses and Doctoral Dissertations

The utilization of recreational drones has experienced a substantial increase in both the United States and globally. However, it is noteworthy that most drones, classified as Internet of Things devices, are produced with a limited security lifecycle. This study's findings are of paramount importance, as traditional computing exploits can be applied to drones, designating them as high- value targets. This study examines the detectability and disruptability of covert timing channel traffic in secure drones. The investigation aims to ascertain the effects of multiple interarrival times, distances ranging from 1 to 330 feet, various detection algorithms, and stream sizes between 32-bit …

Deep Learning-Based Ensemble Two-Step Classification Of Medical Images Using Cnn Architectures And Ensemble Methods, Noreliz Alorico

Master's Theses or Doctor of Nursing Practice

Breast cancer remains one of the most common cancers amongst women globally. Early detection is crucial for improving survival rates. While mammography is widely used and an effective imaging technique, it can sometimes yield false positive or false negatives. Mammogram interpretation is highly operator-dependent, introducing variability and the potential for diagnostic errors. Additionally, mammographic images have limitations, such as low contrast in breast tissue and overlapping structures that can obscure lesions or mimic abnormalities. These limitations can lead to unnecessary biopsies or delayed diagnosis. These challenges highlight the needs for advanced and data driven diagnostic tools to support and enhance …

Machine Learning For Computer-Aided Diagnostics From Complex Medical Images, Afsah Saleem

Theses: Doctorates and Masters

Machine learning has significantly transformed medical image analysis in the current age of artificial intelligence offering vast potential in improving disease diagnosis and management. Cardiovascular diseases (CVDs) are among the leading cause of global mortality, emphasizing the need for early detection for effective intervention and prevention. Abdominal Aortic Calcification (AAC) is an early indicator and contributor to Atherosclerotic Cardiovascular Diseases (ASCVDs) and is commonly assessed through imaging modalities such as computed tomography (CT), X-rays, and Dual-energy X-ray Absorptiometry (DXA). Among these, lateral spine DXA scans, commonly used for osteoporosis screening, offer a cost-effective and low-radiation opportunity for opportunistic CVD risk …

Deep Learning For Irish Garden Bird Identification: Exploring The Role Of Cnn-Lstm In Video-Based Recognition, Antonina Dolynenko

ICT

Bird populations are widely used as indicators of ecosystem health, but traditional monitoring based on manual observation is labour-intensive and difficult to scale. Recent advances in deep learning and low-cost edge hardware offer new opportunities for automated, real-time bird identification in gardens and other local habitats. This thesis investigates whether video-based deep learning models can reliably classify common Irish garden birds from short motion-triggered clips and how temporal modelling compares to image-based models.

A primary dataset of 20-second clips was collected in a private garden in Ireland using a Raspberry Pi with a high-resolution camera and a YOLO-based trigger to …

Predicting Human Steering From Optic Flow Using Deep Convolutional Neural Networks, Katie E. Bernard

Honors Theses

Human driving is a complex visuomotor task and the specific visual clues that guide it remain under investigation. While prior research has emphasized gaze-based strategies such as the Tangent Point and Future Path hypotheses, recent evidence highlights the potential role of optic flow, the visual motion pattern perceived during self-movement, as critical to steering ability. This thesis explores whether raw optic flow alone can support accurate predictions of human steering behavior. We trained a convolutional neural network to map optic flow vector fields to steering angles in a virtual reality driving simulation. The dataset, collected by Giguere et al., included …

A Hybrid Deep Learning Model For Iot Network Anomaly Detection, Yonas Getachew Mulissa

CCAC Theses and Dissertations

The rapid expansion of Internet of Things (IoT) networks has heightened the need for intelligent, automated Anomaly Detection (AD) systems to identify sophisticated and evolving cyber threats. This study designed, implemented, and evaluated a broad range of deep learning models—including Convolutional Neural Networks (CNN), Recurrent Neural Networks (RNNs) (Long Short-Term Memory (LSTM), Gated Recurrent Unit (GRU), Bidirectional Gated Recurrent Unit (BiGRU), Bidirectional Long Short-Term Memory (BiLSTM)), Transformer-based architectures, Autoencoders, and hybrid combinations—to address the challenge of multiclass anomaly classification in IoT traffic. Using two benchmark datasets, IoT-DS-2 and CIC-IoT-2023, we conducted extensive experiments to assess classification performance, training efficiency, and …

Evaluating Aspect-Based Sentiment Analysis In Healthcare Drug Reviews Across Machine Learning, Deep Neural Networks, And Transformer Models, Eun Soo Park

All Graduate Theses, Dissertations, and Other Capstone Projects

Sentiment analysis has become a critical area of research in Natural Language Processing (NLP), enabling insights from unstructured text. Within this field, Aspect-Based Sentiment Analysis (ABSA) plays a practical role in domains such as healthcare, where patients drug reviews often contain diverse opinions across multiple aspects, including overall comments, perceived benefits, and side effects. However, aspect-level classification remains challenging due to class imbalance, subtle sentiment expression, and the limitations of traditional models. This research investigates the performance of three modeling paradigms: traditional machine learning (SVM, SVC, and XGBoost), deep learning (CNN-BiLSTM), and transformer-based approaches (DistilBERT sentence-pair classification). Using the UCI …

Topo-Vm-Unetv2: Encoding Topology Into Vision Mamba Unet For Polyp Segmentation, Diego Adame, Jose Angel Nunez, Fabian Vazquez Jr., Nayeli Gurrola, Huimin Li, Haoteng Tang

Computer Science Faculty Publications

Convolutional neural network (CNN) and Transformer-based architectures are two dominant deep learning models for polyp segmentation. However, CNNs have limited capability for modeling long-range dependencies, while Transformers incur quadratic computational complexity. Recently, State Space Models such as Mamba have been recognized as a promising approach for polyp segmentation because they not only model long-range interactions effectively but also maintain linear computational complexity. However, Mamba-based architectures still struggle to capture topological features (e.g., connected components, loops, voids), leading to inaccurate boundary delineation and polyp segmentation. To address these limitations, we propose a new approach called Topo-VM-UNetV2, which encodes topological features into …

Neural Network Algorithm And Analysis For Multi-Label Ecg Data Classification, Akhil Raghava Kalal

Theses and Dissertations

Electrocardiogram (ECG) analysis is a fundamental diagnostic tool in cardiology, providing critical insights into cardiac function that directly impact patient care decisions and treatment outcomes. As healthcare systems face increasing demands, automated ECG interpretation using artificial intelligence offers promising solutions to improve diagnostic accuracy, reduce physicians workload, and enhance early detection of life threatening conditions.

This thesis compares two advanced deep learning architectures, CNN-GRU and Wide and Deep Transformer, for multi-label classification of 12-lead ECG data. Using data from the PhysioNet/Computing in Cardiology Challenge 2020, I evaluated both architectures across 27 different cardiac abnormalities. Results demonstrated that CNN-GRU architecture consistently …

Deep Learning Models Based On Cnn, Rnn, And Lstm For Rainfall Forecasting: Jordan As A Case Study, La'aly A. Al-Samrraie, Ayman M. Abdalla, Khalideh Al Bkoor Alrawashdeh, Abeer Al Bsoul, Mohammad Abu Awad, Kamel Alzboon, Ahmed A. Al-Taani

All Works

This study is the first to compare deep learning models for rainfall prediction across several Jordanian cities representing diverse climates using 11 years of recorded climate data, something that previous studies have not addressed in the Jordanian context. The climate records for four Jordanian cities (Amman, Irbid, Karak, and Ajloun) were recorded hourly. The data was divided into training sets (80%) and test sets (20%), with and without the application of correlation analysis, feature selection, and data standardization steps applied. Three neural network models, Recurrent Neural Network (RNN), Long Short-Term Memory (LSTM), and Convolutional Neural Network-Recurrent Neural Network (CNN-RNN) were …

Quantum-Augmented Ai/Ml For O-Ran: Hierarchical Threat Detection For Synergistic Intelligence And Interpretability, Tan Le, Vanessa Le, Sachin Shetty

VMASC Publications

Open Radio Access Networks (O-RAN) enhance modularity and telemetry granularity but also widen the cybersecurity attack surface across disaggregated control, user and management planes. We propose a hierarchical defense framework with three coordinated layers—anomaly detection, intrusion confirmation, and multiattack classification—each aligned with O-RAN’s telemetry stack. Our approach integrates hybrid quantum computing and machine learning, leveraging amplitude- and entanglement-based feature encodings with deep and ensemble classifiers. We conduct extensive benchmarking across synthetic and real-world telemetry, evaluating encoding depth, architectural variants, and diagnostic fidelity. The framework consistently achieves near-perfect accuracy, high recall, and strong class separability. Multi-faceted evaluation across decision boundaries, probabilistic …

Symbol-Temporal Consistency Self-Supervised Learning For Robust Time Series Classification, Kevin Garcia, Cassandra Garza, Brooklyn Berry, Yifeng Gao

Computer Science Faculty Publications

The surge in the significance of time series in digital health domains necessitates advanced methodologies for extracting meaningful patterns and representations. Self-supervised contrastive learning has emerged as a promising approach for learning directly from raw data. However, time series data in digital health is known to be highly noisy, inherently involves concept drifting, and poses a challenge for training a generalizable deep learning model. In this paper, we specifically focus on data distribution shift caused by different human behaviors and propose a self-supervised learning framework that is aware of the bag-of-symbol representation. The bag-of-symbol representation is known for its insensitivity …

Balancing Performance And Efficiency: An Autoencoder Approach To Api-Based Malware Detection, Selma Bouraoui

Graduate Theses/Dissertations

The constant evolution of malware presents a critical challenge to today's interconnected world. It poses an increasing threat on different scales, spanning from individuals, organizations to critical infrastructures such as government’s security. Hackers continuously develop new techniques to evade detection methods. When confronted with the high volume and variety of malware, conventional approaches tend to struggle to perform in robust, accurate and timely manner. This thesis explores the application of deep learning methods to improve malware detection and classification techniques. By analyzing API call sequences, the proposed approach leverages Autoencoders to compress high-dimensional malware data into more optimized representations that …

Approach For Detecting Face Morphing Attacks Using Convolution Neural Network, Essa M. Namis, Khalid Shaker, Sufyan Al-Janabi

Mesopotamian Journal of Computer Science

The facial morphing method combines at least two images of the face to get a singular altered facial image that exposes the vulnerabilities of face recognition systems (FRS). The extensive implementation of face recognition algorithms, particularly in Automatic Border Control (ABC) systems, has raised apprehensions over potential threats, as modified passports present significant risks to national security. In this paper, a new face morphing attack detection approach has been proposed using two different datasets (StyleGAN and AMSL) for testing and validation. A new model for face morphing attack detection based on a special Convolutional Neural Networks (CNNs) architecture has been …

Securing The Internet Of Wetland Things (Iowt) Using Machine And Deep Learning Methods: A Survey, Guma Ali, Wamusi Robert, Maad M. Mijwil, Malik Sallam, Jenan Ayad

Mesopotamian Journal of Computer Science

Wetlands are essential ecosystems that provide ecological, hydrological, and economic benefits. However, human activities and climate change are degrading their health and jeopardizing their long-term sustainability. To address these challenges, the Internet of Wetland Things (IoWT) has emerged as an innovative framework integrating advanced sensing, data collection, and communication technologies to monitor and manage wetland ecosystems. Despite its potential, the IoWT faces substantial security and privacy risks, compromising its effectiveness and hindering adoption. This survey explores integrating machine learning (ML) and deep learning (DL) techniques as solutions to address the security threats, vulnerabilities, and challenges inherent in IoWT ecosystems. The …

Deepsecure: A Novel Deep Learning Model For Effective Detection Of Attacks On Big Data In Internet Of Urban Things, Laiba Sabir, Nadeem Javaid, Mariam Akbar, Nabil Alrajeh, Safdar Hussain Bouk, Abdulaziz Aldegheishem

School of Cybersecurity Faculty Publications

The Internet of Urban Things (IoUTs) regularly generates large amounts of data, making it a focus of cyberthreats such as denial-of-service attacks and malware bot networks. Traditional intrusion detection systems struggle to detect intricate attack patterns, handle class imbalance, capture temporal dependencies, and exhibit transparency. To address these limitations, we introduce a novel deep machine learning model, DeepSecure, a hybrid model that combines Deep Belief Networks (DBN) for hierarchical feature extraction and Deep Neural Networks for attack classification. DBN is used for feature selection through unsupervised learning to extract hierarchical representations in the IoUTs network data. We assess the random …

Long-Term Traffic Prediction Using Deep Learning Long Short-Term Memory, Ange-Lionel Toba, Sameer Kulkarni, Wael Khallouli, Timothy Pennington

School of Cybersecurity Faculty Publications

Traffic conditions are a key factor in our society, contributing to quality of life and the economy, as well as access to professional, educational, and health resources. This emphasizes the need for a reliable road network to facilitate traffic fluidity across the nation and improve mobility. Reaching these characteristics demands good traffic volume prediction methods, not only in the short term but also in the long term, which helps design transportation strategies and road planning. However, most of the research has focused on short-term prediction, applied mostly to short-trip distances, while effective long-term forecasting, which has become a challenging issue …

An Integrated Machine Learning Approach For Identifying Emergency Rescue Messages On Social Media During Natural Disasters, Wael Khallouli, Jiang Li, Jingwei Huang, Ghaith Rabadi, Samuel Kovacic

School of Cybersecurity Faculty Publications

During large-scale disasters, emergency call centers are often overwhelmed by the large volume of rescue requests and calls for help. Consequently, people are turning to social media platforms to seek assistance. Rescue information posted on these platforms is extremely valuable for first responders to make informed rescue decisions. Therefore, the automatic identification of these requests from the vast amount of data posted on social media during crises is critical yet challenging. This work presents our ongoing research on applying deep learning techniques to extract actionable rescue information from social media during crises. We proposed a novel deep learning model that …

Development Of An Ecg-Based Deep Learning Model For Pediatric Congenital Heart Disease (Chd) Diagnosis, Annbar Mekouar

Selected Full-Text Master Theses 2021-

Congenital heart disease (CHD) stands as the leading congenital anomaly which affects pediatric populations throughout the world. The effectiveness of treatment depends on both early diagnosis and accurate identification but echocardiography requires manual interpretation which proves time-consuming and inconsistent especially when examining pediatric patients with their distinct cardiac systems. The research aims to create a deep learning-based diagnostic framework which uses ECG data to identify coronary artery disease subtypes in pediatric patients. The model uses high-quality datasets from Dr. Ignacio Lugones to extract R-R intervals and QRS durations through convolutional neural networks (CNNs). The system addresses pediatric-specific challenges while enhancing …

Physics-Informed Deep Learning With Kalman Filter Mixture For Traffic State Prediction, Niharika Deshpande, Hyoshin (John) Park

Engineering Management & Systems Engineering Faculty Publications

Accurate traffic forecasting is crucial for understanding and managing congestion for efficient transportation planning. However, conventional approaches often neglect epistemic uncertainty, which arises from incomplete knowledge across different spatiotemporal scales. This study addresses this challenge by introducing a novel methodology to establish dynamic spatiotemporal correlations that captures the unobserved heterogeneity in travel time through distinct peaks in probability density functions, guided by physics-based principles. We propose an innovative approach to modifying both prediction and correction steps of the Kalman Filter (KF) algorithm by leveraging established spatiotemporal correlations. Central to our approach is the development of a novel deep learning model …

Leveraging Transformer-Based Ocr Model With Generative Data Augmentation For Engineering Document Recognition, Wael Khallouli, Mohammad Shahab Uddin, Andres Sousa-Poza, Jiang Li, Samuel Kovacic

Engineering Management & Systems Engineering Faculty Publications

The long-standing practice of document-based engineering has resulted in the accumulation of a large number of engineering documents across various industries. Engineering documents, such as 2D drawings, continue to play a significant role in exchanging information and sharing knowledge across multiple engineering processes. However, these documents are often stored in non-digitized formats, such as paper and portable document format (PDF) files, making automation difficult. As digital engineering transforms processes in many industries, digitizing engineering documents presents a crucial challenge that requires advanced methods. This research addresses the problem of automatically extracting textual content from non-digitized legacy engineering documents. We introduced …

Leveraging Sentiment Analysis Of Food Delivery Services Reviews Using Deep Learning And Word Embedding, Dheya Mustafa, Safaa M. Khabour, Mousa Al-Kfairy, Ahmed Shatnawi

All Works

Companies that deliver food (food delivery services, or FDS) try to use customer feedback to identify aspects where the customer experience could be improved. Consumer feedback on purchasing and receiving goods via online platforms is a crucial tool for learning about a company’s performance. Many English-language studies have been conducted on sentiment analysis (SA). Arabic is becoming one of the most extensively written languages on the World Wide Web, but because of its morphological and grammatical difficulty as well as the lack of openly accessible resources for Arabic SA, like as dictionaries and datasets, there has not been much research …

Ai Innovations In Rppg Systems For Driver Monitoring: Comprehensive Systematic Review And Future Prospects, Soha G. Ahmed, Katrien Verbert, Nazar Zaki, Ashraf Khalil, Hamad Aljassmi, Fady Alnajjar

All Works

Advanced technologies, notably camera-based systems using remote photoplethysmography (rPPG), are increasingly used in automotive safety to non-invasively monitor driver well-being and fatigue by measuring physiological metrics like heart and respiration rates. This review examines recent advancements in machine learning algorithms and signal processing for rPPG in driver monitoring. A literature search up to April 2, 2024, across major databases, identified 344 studies; 29 were analyzed in depth, focusing on: 1) rPPG signal extraction and heart rate estimation, where deep learning improved accuracy; 2) fatigue detection, showing benefits of multimodal data fusion; 3) mental state monitoring, with machine learning classifying cognitive …

Deep Learning Approaches For Eeg-Based Biometrics: A Systematic Review, Ali E. Albaiati, Muhammad Firdaus Akbar, Murtadha D. Hssayeni, Ashraf Khalil, Mohd Nadhir Ab Wahab, Sundus Sulaiman Weli, Enas A. Raheema

All Works

Biometics such as fingerprint, face, and iris are vulnerable to spoof attacks. The unique characteristics of Electroencephalography (EEG) make it a promising biometric modality especially because of its resistance to spoofing attacks. Many deep learning methods have been proposed for EEG-based biometric systems. This systematic review examines these methods in terms of their feature extraction ability and authentication performance. We follow the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines to search IEEE Xplore, PubMed, Web of Science, ScienceDirect, and Springer databases. Initially, we identified 285 relevant articles published between 2018 and 2024. After removing duplicates and applying …

Optimizing Ai Language Models: A Study Of Chatgpt-4 Vs. Chatgpt-4o, Md Nurul Absar Siddiky, Muhammad Enayetur Rahman, Md Fayaz Bin Hossen, Muhammad Rezaur Rahman, Md. Shahadat Jaman

Electrical & Computer Engineering Faculty Publications

This paper presents a comparative analysis of OpenAI's GPT-4 and its optimized variant, GPT-4o, focusing on their architectural differences, performance, and real-world applications. GPT-4, built upon the Transformer architecture, has set new standards in natural language processing (NLP) with its capacity to generate coherent and contextually relevant text across a wide range of tasks. However, its computational demands, requiring substantial hardware resources, make it less accessible for smaller organizations and real-time applications. In contrast, GPT-4o addresses these challenges by incorporating optimizations such as model compression, parameter pruning, and memory-efficient computation, allowing it to deliver similar performance with significantly lower computational …

A Fast Framework For Generating Radioactive Mixture Spectra And Its Application To Remote High-Performance Mixture Identification, Chiman Kwan, Bulent Ayhan, Adam Stavola, Kazi Aminul Islam, Hongfang Zhang, Jiang Li

Electrical & Computer Engineering Faculty Publications

Remote detection of radioactive materials in mixtures using handheld or portal detectors remains a challenge because of factors such as low concentration, environmental interference, sensor noise, and other complications. This work introduces a fast framework for generating realistic mixture spectra. Moreover, we present mixture isotope identification using data generated by the fast framework. Researchers have examined a range of conventional and recent algorithms within the fields of machine learning and deep learning. An application to uranium enrichment-level prediction has been included. Extensive simulation experiments validated the efficacy of the proposed framework.

Adaptive Fusion Neural Networks For Sparse-Angle X-Ray 3d Reconstruction, Shaoyong Hong, Bo Yang, Yan Chen, Hao Quan, Shan Liu, Minyi Tang, Jiawei Tian

Electrical & Computer Engineering Faculty Publications

3D medical image reconstruction has significantly enhanced diagnostic accuracy, yet the reliance on densely sampled projection data remains a major limitation in clinical practice. Sparse-angle X-ray imaging, though safer and faster, poses challenges for accurate volumetric reconstruction due to limited spatial information. This study proposes a 3D reconstruction neural network based on adaptive weight fusion (AdapFusionNet) to achieve high-quality 3D medical image reconstruction from sparse-angle X-ray images. To address the issue of spatial inconsistency in multi-angle image reconstruction, an innovative adaptive fusion module was designed to score initial reconstruction results during the inference stage and perform weighted fusion, thereby improving …