Computer Sciences Commons^™

Sel-Covidnet: An Intelligent Application For The Diagnosis Of Covid-19 From Chest X-Rays And Ct-Scans, Ahmad Al Smadi, Ahed Abugabah, Ahmad Mohammad Al-Smadi, Sultan Almotairi

All Works

COVID-19 detection from medical imaging is a difficult challenge that has piqued the interest of experts worldwide. Chest X-rays and computed tomography (CT) scanning are the essential imaging modalities for diagnosing COVID-19. All researchers focus their efforts on developing viable methods and rapid treatment procedures for this pandemic. Fast and accurate automated detection approaches have been devised to alleviate the need for medical professionals. Deep Learning (DL) technologies have successfully recognized COVID-19 situations. This paper proposes a developed set of nine deep learning models for diagnosing COVID-19 based on transfer learning and implementation in a novel architecture (SEL-COVIDNET). In which …

Machine Learning And Scalable Informatics Methods To Predict Disease Status From Multimodal Biomedical Data, Hossein Mohammadian Foroushani

McKelvey School of Engineering Graduate Student Theses & Dissertations

Biological understanding of complex diseases such as stroke and obesity is critical for the advancement of medicine. Further knowledge discovery can provide effective biomarkers to improve disease diagnosis and prognosis, identify driver mutations, predict individual genetic susceptibility for early prevention and effective disease management, and facilitate development of personalized drugs. Stroke is the second leading cause of death and long-term disability in the world. Thus, stroke management is a time-sensitive emergency. The initial hours after stroke onset map the trajectory of subsequent neurologic complications. Cerebral edema develops hours to days after acute ischemic stroke and may result in midline shift …

Skin Lesion Segmentation Based On U-Shaped Network, Muna Khalaf, Ban N. Dhannoon

Karbala International Journal of Modern Science

Skin lesion segmentation is an essential step toward accurate skin lesion diagnosis. The need to automate Skin lesion segmentation on the one hand, and the challenges it faces, on the other hand, have made it a growing area of research and focus. Automation of skin lesion segmentation helps reduce the effort and time needed for diagnosis and treatment and helps make better utilization of available data and shared experiences. The challenges faced by the automation of skin lesion segmentation can be broadly defined by (but not limited to); variations in texture, shape, and size for skin lesions and the low …

Applied Deep Learning: Case Studies In Computer Vision And Natural Language Processing, Md Reshad Ul Hoque

Electrical & Computer Engineering Theses & Dissertations

Deep learning has proved to be successful for many computer vision and natural language processing applications. In this dissertation, three studies have been conducted to show the efficacy of deep learning models for computer vision and natural language processing. In the first study, an efficient deep learning model was proposed for seagrass scar detection in multispectral images which produced robust, accurate scars mappings. In the second study, an arithmetic deep learning model was developed to fuse multi-spectral images collected at different times with different resolutions to generate high-resolution images for downstream tasks including change detection, object detection, and land cover …

Deep Active Genetic Learning With Evidential Uncertainty For Agriculture Crops And Lake Water Quality Assessment, Oguz M. Aranay

Legacy Theses & Dissertations (2009 - 2024)

Despite significant advancements in the field of machine learning, there are two issues that still require further exploration. First, how to learn from a small dataset; and second, how to select appropriate features from the data. Although there exist many techniques to address these issues, choosing a combination of the techniques from these two groups is challenging, and worth investigating. To address these concerns, this thesis presents a learning framework that is based on a deep learning model utilizing active learning (with evidential uncertainty as a basis for acquisition function) for the first issue and a genetic algorithm for the …

Holistic Combination Of Structural And Textual Code Information For Context Based Api Recommendation, Chi Chen, Xin Peng, Zhengchang Xing, Jun Sun, Xin Wang, Yifan Zhao, Wenyun Zhao

Research Collection School Of Computing and Information Systems

Context based API recommendation is an important way to help developers find the needed APIs effectively and efficiently. For effective API recommendation, we need not only a joint view of both structural and textual code information, but also a holistic view of correlated API usage in control and data flow graph as a whole. Unfortunately, existing API recommendation methods exploit structural or textual code information separately. In this work, we propose a novel API recommendation approach called APIRec-CST (API Recommendation by Combining Structural and Textual code information). APIRec-CST is a deep learning model that combines the API usage with the …

Textual Emotion Detection Approaches: A Survey, Mahinda Mahmoud Samy Zidan, Ibrahim Elhenawy, Ahmed R. Abas, Mahmoud Othman

Future Computing and Informatics Journal

Over the past decades, social media attracted individuals to express their feelings on any topic or item, resulting in an incremental growth in the size of created data. These feelings and unstructured data paved the path for business organizations to gather information and build statistical analysis. Various machine learning and natural language processing-based approaches are used for sentiment and emotion analysis. Moreover, deep learning-based approaches recently gained popularity due to their remarkable performance in text analysis. This paper provides a comprehensive overview of the prominent machine learning models applied in emotion analysis. It explores various emotion analysis taxonomies, in addition …

Cross-Lingual Transfer Learning For Statistical Type Inference, Zhiming Li, Xiaofei Xie, Haoliang Li, Zhengzi Xu, Yi Li, Yang Liu

Research Collection School Of Computing and Information Systems

Hitherto statistical type inference systems rely thoroughly on supervised learning approaches, which require laborious manual effort to collect and label large amounts of data. Most Turing-complete imperative languages share similar control- and data-flow structures, which make it possible to transfer knowledge learned from one language to another. In this paper, we propose a cross-lingual transfer learning framework, Plato, for statistical type inference, which allows us to leverage prior knowledge learned from the labeled dataset of one language and transfer it to the others, e.g., Python to JavaScript, Java to JavaScript, etc. Plato is powered by a novel kernelized attention mechanism …

Machine Learning With Kay, Lasith Niroshan, James Carswell

Conference Papers

Computational power is very important when training Deep Learning (DL) models with large amounts of data (Wooldridge, 2021). Hence, High-Performance Computing (HPC) can be leveraged to reduce computational cost, and the Irish Centre for High-End Computing (ICHEC) provides significant infrastructure and services for research and development to both academia and industry. A portion of ICHEC's HPC system has been allocated for institutional access, and this paper presents a case study of how to use Kay (Ireland's national supercomputer) in the remote sensing domain. Specifically, this study uses clusters of Kay Graphics Processing Units (GPUs) for training DL models to extract …

An Empirical Study On Sampling Approaches For 3d Image Classification Using Deep Learning, Nicholas Michelette

Theses and Dissertations

A 3D classification method requires more training data than a 2D image classification method to achieve good performance. These training data usually come in the form of multiple 2D images (e.g., slices in a CT scan) or point clouds (e.g., 3D CAD modeling) for volumetric object representation. The amount of data required to complete this higher dimension problem comes with the cost of requiring more processing time and space. This problem can be mitigated with data size reduction (i.e., sampling). In this thesis, we empirically study and compare the classification performance and deep learning training time of PointNet utilizing uniform …

Video Anomaly Detection: Practical Challenges For Learning Algorithms, Keval Doshi

USF Tampa Graduate Theses and Dissertations

Anomaly detection in surveillance videos is attracting an increasing amount of attention. Despite the competitive performance of several existing methods, they lack theoretical performance analysis, particularly due to the complex deep neural network architectures used in decision making. Additionally, real-time decision making is an important but mostly neglected factor in this domain. Much of the existing methods that claim to be online, depend on batch or offline processing in practice. Furthermore, several critical tasks such as continual learning, model interpretability and cross-domain adaptability are completely neglected in existing works. Motivated by these research gaps, in this dissertation we discuss our …

Towards A Computational Model Of Narrative On Social Media, Anne Bailey

Dartmouth College Undergraduate Theses

This thesis describes a variety of approaches to developing a computational model of narrative on social media. Our goal is to use such a narrative model to identify efforts to manipulate public opinion on social media platforms like Twitter. We present a model in which narratives in a collection of tweets are represented as a graph. Elements from each tweet that are relevant to potential narratives are made into nodes in the graph; for this thesis, we populate graph nodes with tweets’ authors, hashtags, named entities (people, locations, organizations, etc.,), and moral foundations (central moral values framing the discussion). Two …

Training Thinner And Deeper Neural Networks: Jumpstart Regularization, Carles Riera, Camilo Rey, Thiago Serra, Eloi Puertas, Oriol Pujol

Faculty Conference Papers and Presentations

Neural networks are more expressive when they have multiple layers. In turn, conventional training methods are only successful if the depth does not lead to numerical issues such as exploding or vanishing gradients, which occur less frequently when the layers are sufficiently wide. However, increasing width to attain greater depth entails the use of heavier computational resources and leads to overparameterized models. These subsequent issues have been partially addressed by model compression methods such as quantization and pruning, some of which relying on normalization-based regularization of the loss function to make the effect of most parameters negligible. In this work, …

Weakly-Supervised Tumor Purity Prediction From Frozen H&E Stained Slides, Matthew Brendel, Vanesa Getseva, Majd Al Assaad, Michael Sigouros, Alexandros Sigaras, Troy Kane, Pegah Khosravi, Juan Miguel Mosquera, Olivier Elemento, Iman Hajirasouliha

Publications and Research

Background

Estimating tumor purity is especially important in the age of precision medicine. Purity estimates have been shown to be critical for correction of tumor sequencing results, and higher purity samples allow for more accurate interpretations from next-generation sequencing results. Molecular-based purity estimates using computational approaches require sequencing of tumors, which is both time-consuming and expensive.

Methods

Here we propose an approach, weakly-supervised purity (wsPurity), which can accurately quantify tumor purity within a digitally captured hematoxylin and eosin (H&E) stained histological slide, using several types of cancer from The Cancer Genome Atlas (TCGA) as a proof-of-concept.

Findings

Our model predicts …

Simultaneous Energy Harvesting And Gait Recognition Using Piezoelectric Energy Harvester, Dong Ma, Guohao Lan, Weitao Xu, Mahbub Hassan, Wen Hu

Research Collection School Of Computing and Information Systems

Piezoelectric energy harvester, which generates electricity from stress or vibrations, is gaining increasing attention as a viable solution to extend battery life in wearables. Recent research further reveals that, besides generating energy, PEH can also serve as a passive sensor to detect human gait power-efficiently because its stress or vibration patterns are significantly influenced by the gait. However, as PEHs are not designed for precise measurement of motion, achievable gait recognition accuracy remains low with conventional classification algorithms. The accuracy deteriorates further when the generated electricity is stored simultaneously. To classify gait reliably while simultaneously storing generated energy, we make …

Deep Learning For Person Re-Identification: A Survey And Outlook, Mang Ye, Jianbing Shen, Gaojie Lin, Tao Xiang, Ling Shao, Steven C. H. Hoi

Research Collection School Of Computing and Information Systems

Person re-identification (Re-ID) aims at retrieving a person of interest across multiple non-overlapping cameras. With the advancement of deep neural networks and increasing demand of intelligent video surveillance, it has gained significantly increased interest in the computer vision community. By dissecting the involved components in developing a person Re-ID system, we categorize it into the closed-world and open-world settings. We first conduct a comprehensive overview with in-depth analysis for closed-world person Re-ID from three different perspectives, including deep feature representation learning, deep metric learning and ranking optimization. With the performance saturation under closed-world setting, the research focus for person Re-ID …

A Machine Learning And Deep Learning Framework For Binary, Ternary, And Multiclass Emotion Classification Of Covid-19 Vaccine-Related Tweets, Aditya Dubey

Honors Scholar Theses

My research mines public emotion toward the Covid-19 vaccine based on Twitter data collected over the past 6-12 months. This project is centered around building and developing machine learning and deep learning models to perform natural language processing of short-form text, which in our case tweets. These tweets are all vaccine-related tweets and the goal of the classification task is for our models to accurately classify a tweet into one of four emotion groups: Apprehension/Anticipation, Sadness/Anger/Frustration, Joy/Humor/Sarcasm, and Gratitude/Relief. Given this data and the goal of the paper, we aim to answer the following questions: (1) Can a framework be …

Improved Sensor-Based Human Activity Recognition Via Hybrid Convolutional And Recurrent Neural Networks, Sonia Perez-Gamboa

Electronic Theses, Projects, and Dissertations

Non-intrusive sensor-based human activity recognition is utilized in a spectrum of applications including fitness tracking devices, gaming, health care monitoring, and smartphone applications. Deep learning models such as convolutional neural networks (CNNs) and long short-term memory (LSTMs) recurrent neural networks provide a way to achieve human activity recognition accurately and effectively. This project designed and explored a variety of multi-layer hybrid deep learning architectures which aimed to improve human activity recognition performance by integrating local features and was scale invariant with dependencies of activities. We achieved a 94.7% activity recognition rate on the University of California, Irvine public domain dataset …

Hybrid Machine And Deep Learning-Based Cyberattack Detection And Classification In Smart Grid Networks, Adedayo Aribisala

Electronic Theses and Dissertations

Power grids have rapidly evolved into Smart grids and are heavily dependent on Supervisory Control and Data Acquisition (SCADA) systems for monitoring and control. However, this evolution increases the susceptibility of the remote (VMs, VPNs) and physical interfaces (sensors, PMUs LAN, WAN, sub-stations power lines, and smart meters) to sophisticated cyberattacks. The continuous supply of power is critical to power generation plants, power grids, industrial grids, and nuclear grids; the halt to global power could have a devastating effect on the economy's critical infrastructures and human life.

Machine Learning and Deep Learning-based cyberattack detection modeling have yielded promising results when …

Data-Driven Design And Analysis Of Next Generation Mobile Networks For Anomaly Detection And Signal Classification With Fast, Robust And Light Machine Learning, Muhammed Furkan Küçük

USF Tampa Graduate Theses and Dissertations

This research focuses on machine (and deep) learning applications (including clustering,anomaly detection and signal classification) for self-organizing and next generation mobile networks in wireless communications. Specifically, this dissertation document will address the three different topics.

First, in the study titled “Performance analysis of neural network topologies and hyperparameters for deep clustering”, we explore the relationship between the clustering performance and network complexity. Deep learning found its initial footing in supervised applications such as image and voice recognition successes of which were followed by deep generative models across similar domains. In recent years, researchers have proposed creative learning representations to utilize …

When Is Deep Learning Better And When Is Shallow Learning Better: Qualitative Analysis, Salvador Robles Herrera, Martine Ceberio, Vladik Kreinovich

Departmental Technical Reports (CS)

In many practical situations, deep neural networks work better than the traditional "shallow" ones, however, in some cases, the shallow neural networks lead to better results. At present, deciding which type of neural networks will work better is mostly done by trial and error. It is therefore desirable to come up with some criterion of when deep learning is better and when shallow is better. In this paper, we argue that this depends on whether the corresponding situation has natural symmetries: if it does, we expect deep learning to work better, otherwise we expect shallow learning to be more effective. …

A Survey On Modern Deep Neural Network For Traffic Prediction: Trends, Methods And Challenges, David Alexander Tedjopumomo, Zhifeng Bao, Baihua Zheng, Farhana Murtaza Choudhury, Kai Qin

Research Collection School Of Computing and Information Systems

In this modern era, traffic congestion has become a major source of negative economic and environmental impact for urban areas worldwide. One of the most efficient ways to mitigate traffic congestion is through future traffic prediction. The field of traffic prediction has evolved greatly ever since its inception in the late 70s. Earlier studies mainly use classical statistical models such as ARIMA and its variants. Then, researchers started to focus on machine learning models due to their power and flexibility. As theoretical and technological advances emerge, we enter the era of deep neural network, which gained popularity due to its …

Entity Based Sentiment Analysis For Textual Health Advice, Dae Lim Chung

Computer Science Senior Theses

This work explores entity based sentiment analysis for textual health advice through deep learning. We fine tuned a pretrained BERT model to analyze sentiments across five different predetermined categories which consist of food, medicine, disease, exercise, and vitality for three different sentiments: positive, negative, and neutral. Original set of annotated medical dataset from Dartmouth College’s Persist Lab was used to conduct the experiments. For the aim of tailoring the data for the purpose of entity based sentiment analysis, we explored data transformation techniques to generate optimum training examples. During the experiments, we were able to discover that the wide variety …

Deep Learning Based Generative Materials Design, Yong Zhao

Theses and Dissertations

Discovery of novel functional materials is playing an increasingly important role in many key industries such as lithium batteries for electric vehicles and cell phones. However experimental tinkering of existing materials or Density Functional Theory (DFT) based screening of known crystal structures, two of the major current materials design approaches, are both severely constrained by the limited scale (around 250,000 in ICSD database) and diversity of existing materials and the lack of a sufficient number of materials with annotated properties. How to generate a large number of physically feasible, stable, and synthesizable crystal materials and build accurate property prediction models …

Fusionai, A Dna-Sequence-Based Deep Learning Protocol Reduces The False Positives Of Human Fusion Gene Prediction, Pora Kim, Hua Tan, Jiajia Liu, Himansu Kumar, Xiaobo Zhou

Faculty, Staff and Student Publications

Even though there were many tool developments of fusion gene prediction from NGS data, too many false positives are still an issue. Wise use of the genomic features around the fusion gene breakpoints will be helpful to identify reliable fusion genes efficiently. For this aim, we developed FusionAI, a deep learning pipeline predicting human fusion gene breakpoints from DNA sequence. FusionAI is freely available via https://compbio.uth.edu/FusionGDB2/FusionAI. For complete details on the use and execution of this protocol, please refer to Kim et al. (2021b).

Riconv++: Effective Rotation Invariant Convolutions For 3d Point Clouds Deep Learning, Zhiyuan Zhang, Binh-Son Hua, Sai-Kit Yeung

Research Collection School Of Computing and Information Systems

3D point clouds deep learning is a promising field of research that allows a neural network to learn features of point clouds directly, making it a robust tool for solving 3D scene understanding tasks. While recent works show that point cloud convolutions can be invariant to translation and point permutation, investigations of the rotation invariance property for point cloud convolution has been so far scarce. Some existing methods perform point cloud convolutions with rotation-invariant features, existing methods generally do not perform as well as translation-invariant only counterpart. In this work, we argue that a key reason is that compared to …

Mwptoolkit: An Open-Source Framework For Deep Learning-Based Math Word Problem Solvers, Yihuai Lan, Lei Wang, Qiyuan Zhang, Yunshi Lan, Bing Tian Dai, Yan Wang, Dongxiang Zhang, Ee-Peng Lim

Research Collection School Of Computing and Information Systems

While Math Word Problem (MWP) solving has emerged as a popular field of study and made great progress in recent years, most existing methods are benchmarked solely on one or two datasets and implemented with different configurations. In this paper, we introduce the first open-source library for solving MWPs called MWPToolkit, which provides a unified, comprehensive, and extensible framework for the research purpose. Specifically, we deploy 17 deep learning-based MWP solvers and 6 MWP datasets in our toolkit. These MWP solvers are advanced models for MWP solving, covering the categories of Seq2seq, Seq2Tree, Graph2Tree, and Pre-trained Language Models. And these …

Detecting Patches On Road Pavement Images Acquired With 3d Laser Sensors Using Object Detection And Deep Learning, Syed Ibrahim Hassan, Dympna O'Sullivan, Susan Mckeever, Kieran Feighan, David Power, Ray Mcgowan

Articles

Regular pavement inspections are key to good road maintenance and road defect corrections. Advanced pavement inspection systems such as LCMS (Laser Crack Measurement System) can automatically detect the presence of different defects using 3D lasers. However, such systems still require manual involvement to complete the detection of pavement defects. This paper proposes an automatic patch detection system using object detection technique. To our knowledge, this is the first time state-of-the-art object detection models Faster RCNN, and SSD MobileNet-V2 have been used to detect patches inside images acquired by LCMS. Results show that the object detection model can successfully detect patches …

Segmentation Of Intracranial Structures From Noncontrast Ct Images With Deep Learning, Evan Porter

Wayne State University Dissertations

Presented in this work is an investigation of the application of artificially intelligent algorithms, namely deep learning, to generate segmentations for the application in functional avoidance radiotherapy treatment planning. Specific applications of deep learning for functional avoidance include generating hippocampus segmentations from computed tomography (CT) images and generating synthetic pulmonary perfusion images from four-dimensional CT (4DCT).A single institution dataset of 390 patients treated with Gamma Knife stereotactic radiosurgery was created. From these patients, the hippocampus was manually segmented on the high-resolution MR image and used for the development of the data processing methodology and model testing. It was determined that …

Edge-Iiotset: A New Comprehensive Realistic Cyber Security Dataset Of Iot And Iiot Applications For Centralized And Federated Learning, Mohamed A. Ferrag, Othmane Friha, Djallel Hamouda, Leandros Maglaras, Helge Janicke

Research outputs 2022 to 2026

In this paper, we propose a new comprehensive realistic cyber security dataset of IoT and IIoT applications, called Edge-IIoTset, which can be used by machine learning-based intrusion detection systems in two different modes, namely, centralized and federated learning. Specifically, the dataset has been generated using a purpose-built IoT/IIoT testbed with a large representative set of devices, sensors, protocols and cloud/edge configurations. The IoT data are generated from various IoT devices (more than 10 types) such as Low-cost digital sensors for sensing temperature and humidity, Ultrasonic sensor, Water level detection sensor, pH Sensor Meter, Soil Moisture sensor, Heart Rate Sensor, Flame …