Computer Sciences Commons^™

A Large Scale Multi Institutional Study For Radiomics Driven Machine Learning For Meningioma Grading, Mert Karabacak, Shiv Patil, Rui Feng, Raj K. Shrivastava, Konstantinos Margetis

Department of Medicine Faculty Papers

This study aims to develop and evaluate radiomics-based machine learning (ML) models for predicting meningioma grades using multiparametric magnetic resonance imaging (MRI). The study utilized the BraTS-MEN dataset's training split, including 698 patients (524 with grade 1 and 174 with grade 2-3 meningiomas). We extracted 4872 radiomic features from T1, T1 with contrast, T2, and FLAIR MRI sequences using PyRadiomics. LASSO regression reduced features to 176. The data was split into training (60%), validation (20%), and test (20%) sets. Five ML algorithms (TabPFN, XGBoost, LightGBM, CatBoost, and Random Forest) were employed to build models differentiating low-grade (grade 1) from high-grade …

Visual Parsing Algorithms For An Equitable Augmented Reality Learning System, Pushpita Saha '25, Matthew L. Furber Mfa, Paul W. Bible

Annual Student Research Poster Session

Giving instructions for a character to navigate around a scene provides a simple analog for the planning needed in computer programming. While many children’s navigation games exist, most require the child to use a combination of input devices such as keyboard, mouse, and controllers for play. Children under the age of five may struggle to use a mouse, but they can easily construct the plans needed for such a game. This research explores layout and graph connectivity algorithms to connect tactile game pieces for a navigation game. A web camera identifies the position of action cards and numerical modifiers (card: …

A Primer On How Al Algorithms Control You, Russell Fulmer

Journal of Technology in Counselor Education and Supervision

Artificial intelligence (AI) algorithms can control you by exerting heavy influence on your worldview. Your worldview is akin to your personal philosophy, which affects how you perceive and label social systems and structures, groups of people, and politics. Algorithms impact your decision-making, beliefs, mood, relationships, and more. My rhetoric is intentionally strong when discussing algorithms, and I invite you to assess its merit by reviewing related literature and thinking critically.

A Feasibility-Preserved Quantum Approximate Solver For The Capacitated Vehicle Routing Problem, Ningyi Xie, Xinwei Lee, Dongsheng Cai, Yoshiyuki Saito, Nobuyoshi Asai, Hoong Chuin Lau

Research Collection School Of Computing and Information Systems

The Capacitated Vehicle Routing Problem (CVRP) is an NP-optimization problem (NPO) that arises in various fields including transportation and logistics. The CVRP extends from the Vehicle Routing Problem (VRP), aiming to determine the most efficient plan for a fleet of vehicles to deliver goods to a set of customers, subject to the limited carrying capacity of each vehicle. As the number of possible solutions increases exponentially with the number of customers, finding high-quality solutions remains a significant challenge. Recently, the Quantum Approximate Optimization Algorithm (QAOA), a quantum–classical hybrid algorithm, has exhibited enhanced performance in certain combinatorial optimization problems, such as …

Confronting Algorithms: Conscience Catching In The Criminal Trial And Beyond, Sherman J. Clark

University of Michigan Journal of Law Reform

Using the question of how to treat algorithmic evidence under the Confrontation Clause as an entry point, I argue that the use of AI in ethically salient situations presents a risk. It may cause us to avoid confronting our own responsibility. This matters because facing up to what we do, including what we delegate, can help us grow and thrive. Bearing responsibility can help us nurture vital capacities, including forms of empathy, honesty, and dignity. In the language of ethics, these are eudaimonist virtues—traits and capacities that can help us live well and fully. We should thus find ways of …

Missing Wedge Completion Via Unsupervised Learning With Coordinate Networks, Dave Van Veen, Jesús G Galaz-Montoya, Liyue Shen, Philip Baldwin, Akshay S Chaudhari, Dmitry Lyumkis, Michael F Schmid, Wah Chiu, John Pauly

Faculty, Staff and Students Publications

Cryogenic electron tomography (cryoET) is a powerful tool in structural biology, enabling detailed 3D imaging of biological specimens at a resolution of nanometers. Despite its potential, cryoET faces challenges such as the missing wedge problem, which limits reconstruction quality due to incomplete data collection angles. Recently, supervised deep learning methods leveraging convolutional neural networks (CNNs) have considerably addressed this issue; however, their pretraining requirements render them susceptible to inaccuracies and artifacts, particularly when representative training data is scarce. To overcome these limitations, we introduce a proof-of-concept unsupervised learning approach using coordinate networks (CNs) that optimizes network weights directly against input …

Asteroidal Sets And Dominating Targets In Graphs, Oleksiy Al-Saadi

School of Computing: Dissertations, Theses, and Student Research

The focus of this PhD thesis is on various distance and domination properties in graphs. In particular, we prove strong results about the interactions between asteroidal sets and dominating targets. Our results add to or extend a plethora of results on these properties within the literature. We define the class of strict dominating pair graphs and show structural and algorithmic properties of this class. Notably, we prove that such graphs have diameter 3, 4, or contain an asteroidal quadruple. Then, we design an algorithm to to efficiently recognize chordal hereditary dominating pair graphs. We provide new results that describe the …

Algorithmic Approaches For Object Tracking And Facial Detection Using Drones, Kareem Shahatta, Peter Savarese, Gina Egitto, Jongwook Kim

Computer Science Student Work

Drones are unmanned aerial vehicles that have a variety of uses in many fields such as package delivery and search operations. Tello is a small, programmable drone designed for educational purposes. We developed algorithms using DJI Tello Py, an open-source Application Programming Interface, to command the movements of Tello for tracking a target object (i.e., human). Our algorithms utilize digital image processing techniques on Tello's live video stream to optimize the number of movements Tello needs to reach its target. Our poster presentation will explain our approaches to implement object-tracking and facial detection for Tello, discuss lessons we learned, and …

The Impact Of Artificial Intelligence And Machine Learning On Organizations Cybersecurity, Mustafa Abdulhussein

Doctoral Dissertations and Projects

As internet technology proliferate in volume and complexity, the ever-evolving landscape of malicious cyberattacks presents unprecedented security risks in cyberspace. Cybersecurity challenges have been further exacerbated by the continuous growth in the prevalence and sophistication of cyber-attacks. These threats have the capacity to disrupt business operations, erase critical data, and inflict reputational damage, constituting an existential threat to businesses, critical services, and infrastructure. The escalating threat is further compounded by the malicious use of artificial intelligence (AI) and machine learning (ML), which have increasingly become tools in the cybercriminal arsenal. In this dynamic landscape, the emergence of offensive AI introduces …

Trading Cloud Computing Stocks Using Sma, Xianrong Zheng, Lingyu Li

Information Technology & Decision Sciences Faculty Publications

As cloud computing adoption becomes mainstream, the cloud services market offers vast profits. Moreover, serverless computing, the next stage of cloud computing, comes with huge economic potential. To capitalize on this trend, investors are interested in trading cloud stocks. As high-growth technology stocks, investing in cloud stocks is both rewarding and challenging. The research question here is how a trading strategy will perform on cloud stocks. As a result, this paper employs an effective method—Simple Moving Average (SMA)—to trade cloud stocks. To evaluate its performance, we conducted extensive experiments with real market data that spans over 23 years. Results show …

Mapping Seagrass Distribution And Abundance: Comparing Areal Cover And Biomass Estimates Between Space-Based And Airborne Imagery, Victoria J. Hill, Richard C. Zimmerman, Dorothy A. Byron, Kenneth L. Heck Jr.

OES Faculty Publications

This study evaluated the effectiveness of Planet satellite imagery in mapping seagrass coverage in Santa Rosa Sound, Florida. We compared very-high-resolution aerial imagery (0.3 m) collected in September 2022 with high-resolution Planet imagery (~3 m) captured during the same period. Using supervised classification techniques, we accurately identified expansive, continuous seagrass meadows in the satellite images, successfully classifying 95.5% of the 11.18 km² of seagrass area delineated manually from the aerial imagery. Our analysis utilized an occurrence frequency (OF) product, which was generated by processing ten clear-sky images collected between 8 and 25 September 2022 to determine the frequency with which …

External Support Structures In Fused Deposition Modeling 3d Printing, Adam Mystkowski

Undergraduate Honors Theses

3D Printing, sometimes also referred to as Additive Manufacturing, is a technology that has garnered a lot of attention in the past several years. While the technology has attracted a significant community of hobbyists, the benefits of the technology have also been recognized in manufacturing. While there are many different types of 3D Printing techniques, the most common type is Fused Deposition Modeling (FDM), mainly due to its relatively low cost compared to other types. However, the technique also present a significant limitation: it tends to struggle with models that have overhanging parts. When a layer is extruded by an …

Integrative Machine Learning Approaches For Enhanced Classification Of Genomic Sequences: A Next-Generation Sequencing Perspective, Sujatha Alla, Nagesh Bheesetty, Sai Gireesh Komaragiri, Prasanthi Chidipudi, Joshit Mohanty, Sathish Kumar Chintala, Jubin Thomas, Jayapal Vummadi, Hemanth Volikatla, Navin Kamuni

Engineering Management & Systems Engineering Faculty Publications

The advent of Next-Generation Sequencing (NGS) techniques has revolutionized genomic research by enabling the rapid sequencing of DNA and RNA. This data can be used for various applications, including genome sequencing, transcriptome profiling, metagenomics, and epigenetics studies. For this study, DNA classifier dataset was extracted from UCI repository of machine learning databases. This vast amount of genomic data necessitates the development of sophisticated machine learning (ML) models for effective classification and analysis. This study presents a comprehensive comparison of various ML models, including Support Vector Machines (SVM), Random Forests (RF), and Neural Networks (NNs), approaches, in classifying genomic data. We …

The Manifesto For Teaching And Learning In A Time Of Generative Ai: A Critical Collective Stance To Better Navigate The Future, Aras Bozkurt, Junhong Xiao, Robert Farrow, John Y. H. Bai, Chrissi Nerantzi, Stephanie Moore, Jon Dron, Christian M. Stracke, Lenandlar Singh, Helen Crompton, Apostolos Koutropoulos, Evgenii Terentev, Angelica Pazurek, Mark Nichols, Alexander M. Sidorkin, Eamon Costello, Steven Watson, Dónal Mulligan, Sarah Honeychurch, Charles B. Hodges, Mike Sharples, Andrew Swindell, Isak Frumin, Ahmed Tlili, Patricia J. Slagter Van Tryon, Melissa Bond, Maha Bali, Jing Leng, Kai Zhang, Mutlu Cukurnova, Thomas K. F. Chiu, Kyungmee Lee, Stefan Hrastinski, Manuel B. Garcia, Ramesh Chander Sharma, Bryan Alexander, Olaf Zawacki-Richter, Henk Huijser, Petar Jandrić, Chanjin Zheng, Peter Shea, Josep M. Duart, Chryssa Themeli, Anton Vorochkov, Sunagül Sani-Bozkurt, Robert L. Moore, Tutaleni Iita Asino

STEMPS Faculty Publications

This manifesto critically examines the unfolding integration of Generative AI (GenAI), chatbots, and algorithms into higher education, using a collective and thoughtful approach to navigate the future of teaching and learning. GenAI, while celebrated for its potential to personalize learning, enhance efficiency, and expand educational accessibility, is far from a neutral tool. Algorithms now shape human interaction, communication, and content creation, raising profound questions about human agency and biases and values embedded in their designs. As GenAI continues to evolve, we face critical challenges in maintaining human oversight, safeguarding equity, and facilitating meaningful, authentic learning experiences. This manifesto emphasizes that …

Machine Learning As A Tool For Early Detection: A Focus On Late-Stage Colorectal Cancer Across Socioeconomic Spectrums, Hadiza Galadima, Rexford Anson-Dwamena, Ashley Johnson, Ghalib Bello, Georges Adunlin, James Blando

Community & Environmental Health Faculty Publications

Purpose: To assess the efficacy of various machine learning (ML) algorithms in predicting late-stage colorectal cancer (CRC) diagnoses against the backdrop of socio-economic and regional healthcare disparities. Methods: An innovative theoretical framework was developed to integrate individual- and census tract-level social determinants of health (SDOH) with sociodemographic factors. A comparative analysis of the ML models was conducted using key performance metrics such as AUC-ROC to evaluate their predictive accuracy. Spatio-temporal analysis was used to identify disparities in late-stage CRC diagnosis probabilities. Results: Gradient boosting emerged as the superior model, with the top predictors for late-stage CRC diagnosis being anatomic site, …

Machine-Learning-Enabled Diagnostics With Improved Visualization Of Disease Lesions In Chest X-Ray Images, Md. Fashiar Rahman, Tzu-Liang (Bill) Tseng, Michael Pokojovy, Peter Mccaffrey, Eric Walser, Scott Moen, Alex Vo, Johnny C. Ho

Mathematics & Statistics Faculty Publications

The class activation map (CAM) represents the neural-network-derived region of interest, which can help clarify the mechanism of the convolutional neural network’s determination of any class of interest. In medical imaging, it can help medical practitioners diagnose diseases like COVID-19 or pneumonia by highlighting the suspicious regions in Computational Tomography (CT) or chest X-ray (CXR) film. Many contemporary deep learning techniques only focus on COVID-19 classification tasks using CXRs, while few attempt to make it explainable with a saliency map. To fill this research gap, we first propose a VGG-16-architecture-based deep learning approach in combination with image enhancement, segmentation-based region …

A Generative Approach For Document Enhancement With Small Unpaired Data, Mohammad Shahab Uddin, Wael Khallouli, Andres Sousa-Poza, Samuel Kovacic, Jiang Li

Engineering Management & Systems Engineering Faculty Publications

Shipbuilding drawings, crafted manually before the digital era, are vital for historical reference and technical insight. However, their digital versions, stored as scanned PDFs, often contain significant noise, making them unsuitable for use in modern CAD software like AutoCAD. Traditional denoising techniques struggle with the diverse and intense noise found in these documents, which also does not adhere to standard noise models. In this paper, we propose an innovative generative approach tailored for document enhancement, particularly focusing on shipbuilding drawings. For a small, unpaired dataset of clean and noisy shipbuilding drawing documents, we first learn to generate the noise in …

Persistent Relative Homology For Topological Data Analysis, Christian J. Lentz

Mathematics, Statistics, and Computer Science Honors Projects

A central problem in data-driven scientific inquiry is how to interpret structure in noisy, high-dimensional data. Topological data analysis (TDA) provides a solution via the language of persistent homology, which encodes features of interest as holes within a filtration of the data. The recently presented U-Match Decomposition places the standard persistence computation in a flexible form, allowing for straight-forward extensions of the algorithm to variations of persistent homology. We describe U-Match Decomposition in the context of persistent homology, and extend it to an algorithm for persistent relative homology, providing proofs for the correctness and stability of the presented algorithm.

Inexact Fixed-Point Proximity Algorithm For The ℓ₀ Sparse Regularization Problem, Ronglong Fang, Yuesheng Xu, Mingsong Yan

Mathematics & Statistics Faculty Publications

We study inexact fixed-point proximity algorithms for solving a class of sparse regularization problems involving the ℓ₀ norm. Specifically, the ℓ₀ model has an objective function that is the sum of a convex fidelity term and a Moreau envelope of the ℓ₀ norm regularization term. Such an ℓ₀ model is non-convex. Existing exact algorithms for solving the problems require the availability of closed-form formulas for the proximity operator of convex functions involved in the objective function. When such formulas are not available, numerical computation of the proximity operator becomes inevitable. This leads to inexact iteration algorithms. We investigate in this …

Using Feature Selection Enhancement To Evaluate Attack Detection In The Internet Of Things Environment, Khawlah Harahsheh, Rami Al-Naimat, Chung-Hao Chen

Electrical & Computer Engineering Faculty Publications

The rapid evolution of technology has given rise to a connected world where billions of devices interact seamlessly, forming what is known as the Internet of Things (IoT). While the IoT offers incredible convenience and efficiency, it presents a significant challenge to cybersecurity and is characterized by various power, capacity, and computational process limitations. Machine learning techniques, particularly those encompassing supervised classification techniques, offer a systematic approach to training models using labeled datasets. These techniques enable intrusion detection systems (IDSs) to discern patterns indicative of potential attacks amidst the vast amounts of IoT data. Our investigation delves into various aspects …

Skipresnet: Crop And Weed Recognition Based On The Improved Resnet, Wenyi Hu, Tian Chen, Chunjie Lan, Shan Liu, Lirong Yin

Electrical & Computer Engineering Faculty Publications

Weeds have a detrimental effect on crop yield. However, the prevailing chemical weed control methods cause pollution of the ecosystem and land. Therefore, it has become a trend to reduce dependence on herbicides; realize a sustainable, intelligent weed control method; and protect the land. In order to realize intelligent weeding, efficient and accurate crop and weed recognition is necessary. Convolutional neural networks (CNNs) are widely applied for weed and crop recognition due to their high speed and efficiency. In this paper, a multi-path input skip-residual network (SkipResNet) was put forward to upgrade the classification function of weeds and crops. It …

Scene Classification Of Remote Sensing Image Based On Multi-Path Reconfigurable Neural Network, Wenyi Hu, Chunjie Lan, Tian Chen, Shan Liu, Lirong Yin, Lei Wang

Electrical & Computer Engineering Faculty Publications

Land image recognition and classification and land environment detection are important research fields in remote sensing applications. Because of the diversity and complexity of different tasks of land environment recognition and classification, it is difficult for researchers to use a single model to achieve the best performance in scene classification of multiple remote sensing land images. Therefore, to determine which model is the best for the current recognition classification tasks, it is often necessary to select and experiment with many different models. However, finding the optimal model is accompanied by an increase in trial-and-error costs and is a waste of …

Hite: A Fast And Accurate Dynamic Boundary Adjustment Approach For Full-Length Transposable Element Detection And Annotation, Kang Hu, Peng Ning, Minghua Xu, You Zou, Jianye Chang, Xin Gao, Yaohang Li, Jue Ruan, Bin Hu, Jianxin Wang

Computer Science Faculty Publications

Recent advancements in genome assembly have greatly improved the prospects for comprehensive annotation of Transposable Elements (TEs). However, existing methods for TE annotation using genome assemblies suffer from limited accuracy and robustness, requiring extensive manual editing. In addition, the currently available gold-standard TE databases are not comprehensive, even for extensively studied species, highlighting the critical need for an automated TE detection method to supplement existing repositories. In this study, we introduce HiTE, a fast and accurate dynamic boundary adjustment approach designed to detect full-length TEs. The experimental results demonstrate that HiTE outperforms RepeatModeler2, the state-of-the-art tool, across various species. Furthermore, …

Sccad: Cluster Decomposition-Based Anomaly Detection For Rare Cell Identification In Single-Cell Expression Data, Yunpei Xu, Shaokai Wang, Qilong Feng, Jiazhi Xia, Yaohang Li, Hong-Dong Li, Jianxin Wang

Computer Science Faculty Publications

Single-cell RNA sequencing (scRNA-seq) technologies have become essential tools for characterizing cellular landscapes within complex tissues. Large-scale single-cell transcriptomics holds great potential for identifying rare cell types critical to the pathogenesis of diseases and biological processes. Existing methods for identifying rare cell types often rely on one-time clustering using partial or global gene expression. However, these rare cell types may be overlooked during the clustering phase, posing challenges for their accurate identification. In this paper, we propose a Cluster decomposition-based Anomaly Detection method (scCAD), which iteratively decomposes clusters based on the most differential signals in each cluster to effectively separate …

Hiking Trail Generation In Infinite Landscapes, Matthew Jensen

MS in Computer Science Project Reports

This project procedurally generates an infinite wilderness populated with deterministic hiking trails. Our approach recognizes that hiking trails depend on contextual information beyond the location of the path itself. To address this, we implemented a layered procedural system that orchestrates the generation process. This helps ensure the availability of contextual data at each stage. The first layer handles terrain generation, establishing the foundational landscape upon which trails will traverse. Subsequent layers handle point of interest identification and selection, trail network optimization through proximity graphs, and efficient pathfinding across the terrain. A notable feature of our approach is the deterministic nature …

An Open Guide To Data Structures And Algorithms, Paul W. Bible, Lucas Moser

Computer Science Faculty publications

This textbook serves as a gentle introduction for undergraduates to theoretical concepts in data structures and algorithms in computer science while providing coverage of practical implementation (coding) issues. The field of computer science (CS) supports a multitude of essential technologies in science, engineering, and communication as a social medium. The varied and interconnected nature of computer technology permeates countless career paths making CS a popular and growing major program. Mastery of the science behind computer science relies on an understanding of the theory of algorithms and data structures. These concepts underlie the fundamental tradeoffs that dictate performance in terms of …

Evaluation Of Symmetric Functions And Boolean Functions Over Stochastic Input, Naifeng Liu

Dissertations, Theses, and Capstone Projects

In our daily life, we often face situations where we need to make precise judgments based on initially unknown information, while gathering all the evidence to make informed conclusions can be very costly. In this dissertation, we explore the problem of optimizing the decision-making process under uncertainty, and we focus on problems that can be found in both theoretical computer science and discrete mathematics. The primary goal is to develop approximation algorithms with guaranteed worst-case performance. These algorithms aim to minimize the expected cost of acquiring information necessary for evaluating fundamental functions, such as Boolean and symmetric functions. Furthermore, we …

How I Read An Article That Uses Machine Learning Methods, Aziz Nazha, Olivier Elemento, Shannon Mcweeney, Moses Miles, Torsten Haferlach

Kimmel Cancer Center Faculty Papers

No abstract provided.

Artificial Intelligence Cad Tools In Trauma Imaging: A Scoping Review From The American Society Of Emergency Radiology (Aser) Ai/Ml Expert Panel, David Dreizin, Pedro V Staziaki, Garvit D Khatri, Nicholas M Beckmann, Zhaoyong Feng, Yuanyuan Liang, Zachary S Delproposto, Maximiliano Klug, J Stephen Spann, Nathan Sarkar, Yunting Fu

Faculty, Staff and Student Publications

BACKGROUND: AI/ML CAD tools can potentially improve outcomes in the high-stakes, high-volume model of trauma radiology. No prior scoping review has been undertaken to comprehensively assess tools in this subspecialty.

PURPOSE: To map the evolution and current state of trauma radiology CAD tools along key dimensions of technology readiness.

METHODS: Following a search of databases, abstract screening, and full-text document review, CAD tool maturity was charted using elements of data curation, performance validation, outcomes research, explainability, user acceptance, and funding patterns. Descriptive statistics were used to illustrate key trends.

RESULTS: A total of 4052 records were screened, and 233 full-text …

Algorithmic Bias: Causes And Effects On Marginalized Communities, Katrina M. Baha

Undergraduate Honors Theses

Individuals from marginalized backgrounds face different healthcare outcomes due to algorithmic bias in the technological healthcare industry. Algorithmic biases, which are the biases that arise from the set of steps used to solve or analyze a problem, are evident when people from marginalized communities use healthcare technology. For example, many pulse oximeters, which are the medical devices used to measure oxygen saturation in the blood, are not able to accurately read people who have darker skin tones. Thus, people with darker skin tones are not able to receive proper health care due to their pulse oximetry data being inaccurate. This …