Computer Sciences Commons^™

A Blockchain-Integrated Federated Learning Model And Autoencoder-Based Feature Reduction For Improving Iot Intrusion Detection, Tahseen A. Wotaifi

Journal of Intelligent Informatics, Networking, and Cybersecurity

The rapid growth of Internet of Things (IoT) environments has brought forth a wealth of security challenges in detecting network intrusions in diverse and resource-restricted systems. Privacy, scalability, and single point of failure issues plague traditional centralized intrusion detection solutions. To address these challenges, the study proposes a secure and adaptive intrusion detection model using Federated Learning (FL) and Blockchain, augmented with autoencoder-based feature reduction. The ToN-IoT dataset is pre-processed, and then an unsupervised autoencoder is used to build informative low-dimensional feature representations. The processed data is deployed to various clients to mimic a real federated situation. Every client will …

A Dual- Task Hierarchical Graph Attention Network For Protein-Protein Interaction Sites Prediction, Oras A. Hussein, Eman S. Al-Shamery

Journal of Intelligent Informatics, Networking, and Cybersecurity

In computational structural biology, it is still very hard to accurately find protein-protein interaction (PPI) sites and estimate how strong the interaction would be. In this research, we provide an innovative two-stage deep learning framework that combines residue-level graph representation learning with protein-level regression to achieve a thorough modeling of protein interactions. Protein structures first encoded as residue graphs, with nodes that stand for amino acids and edges that show how close they are to each other in space. To find binding residues, a deep residual Graph Attention Network v2 (GATv2) uses multi-head attention, residual connections, and Jumping Knowledge aggregation …

Tile-Based Knot Assembly With Celtic!, Divya Bajaj, Ryan Knobel, Juan Manuel Perez, Rene Reyes, Ramiro Santos, Tim Wylie

Computer Science Faculty Publications

In this paper we focus on the intersection of tile assembling systems, edge-matching puzzles, combinatorial games, and knot construction and identity. As a basis, we utilize the game Celtic!, which is a 2-player board game where the goal of the game is to construct knots where one knot uses more of a player’s pieces than the other player over all knots. All pieces must build off an existing knot and a valid knot must be closed. We consider three variations: a 0-player self-assembly variation that deterministically places pieces to form a closed knot of some length, a 1-player puzzle variation …

Cytotoxicity Of Bioactive Peptides From Cowpea (Vigna Unguiculata L. Walp) Against Breast Cancer Cells (Mcf-7), Dian R. Ningsih, Zusfahair Zusfahair, Ely Setiawan, Purwati Purwati, Kasta Gurning, Fitri A. Puspita Sari, Elya Widiawati

Karbala International Journal of Modern Science

Cancer is characterized by dysregulated metabolic signaling pathways, leading to uncontrolled cellular proliferation. Current cancer treatments, which involve surgery, radiotherapy, and chemotherapy, still cause adverse systemic toxicities. Accordingly, one possible effort that can be undertaken is to explore safe anticancer substances from protein sources such as peptides. Bioactive peptides can be isolated by hydrolyzing cowpea (Vigna unguiculata L. Walp) protein with trypsin. The objectives of this study were to isolate and fractionate bioactive peptides from cowpea, to determine the anticancer activity of peptide fractions, to identify active peptide fractions as anticancer agents using Liquid Chromatography High Resolution Mass Spectrometry …

Exogenous Ribosome Incorporation Induces Lineage Transdifferentiation In Intestinal And Liver Cancer Cells, Haoxuan Gu, Nadia Wahyuningsih, Keisuke Yamashita, Shota Inoue, Fuchao Tan, Mani Sharaki, Muhaimin Rifa’I, Kunimasa Ohta

Karbala International Journal of Modern Science

It has previously been shown that exogenous bacterial ribosomes added to somatic cells and various cancer cell lines generate ribosome-induced cell clusters (RICs) capable of transdifferentiating into multiple cellular lineages. However, the scope of ribosome-induced transdifferentiation in cancer cells remains poorly understood. This study aimed to analyze the effects of exogenous ribosome incorporation on human cancer cell lines, specifically the intestinal epithelial cell line Caco-2 and the hepatocellular carcinoma cell line HepG2. Caco-2 and HepG2 cells were cultured with purified bacterial ribosomes in human ES/iPS cell medium after trypsinization, resulting in the formation of ribosome-induced Caco-2 (RICs-Ca) and HepG2 (RICs-He) …

Mathematically Driven Enhancement In Information Security, Suhaib Badran, Asmaa Alqassab

Karbala International Journal of Modern Science

A new mathematically based cryptographic method has been proposed to improve information security; it involves transforming data into a matrix and performing bit-level operations. This decryption then follows the basic mechanism of a deterministic, fully invertible algorithm, with this invertible algorithm having the same principle as the existing ones: the process of decryption is symmetrical, where the process is reversed based on the input of the ciphertext. The plaintext is transformed into a square matrix, which includes matrix rotation, permutation of rows, circular bit shifting, and finally an affine linear transformation followed by an additional Base62-like encoding layer to further …

Tapping Into The Ocean’S Hidden Energy: Feasibility Of A 5 Mw Otec Installation In North Bali, Widodo Setiyo Pranowo, Yani Permanawati, Gisela Malya Asoka Anindita, Agung Kurniawan, Albertus Sulaiman, Johar Setiyadi, Safri Burhanuddin, Ivonne Milichristi Radjawane, Hansan Park, Endro Sigit Kurniawan

Karbala International Journal of Modern Science

Indonesia is an archipelagic country surrounded by water and faces energy challenges due to the low use of renewable energy. Among the potential renewable options, marine energy is a particularly suitable resource given the country’s geographical nature. Based on this discussion, seawater temperature can be used as an alternative ocean thermal en-ergy known as ocean thermal energy conversion (OTEC) by using the difference in sea surface and deep-sea water temperatures. Therefore, this study aimed to examine OTEC installations in North Bali waters using closed-cycle OTEC calculations for a 5 MW system. Following this objective, we examined the water conditions by …

Assessment And Evidence Practices In Cybersecurity Education: A Systematic Review (2015–2025), James K. Mayberry

Journal of Cybersecurity Education, Research and Practice

This study presents a PRISMA-based systematic review of 412 cybersecurity education intervention studies, coding assessment methods, evidence types, claimed outcomes, use of established assessment instruments, and artifact availability. Despite frequent claims of skill development and workforce preparation, 45.4% of studies reported no identifiable assessment. Knowledge tests appeared in 11.4% of studies, while performance assessments appeared in 10.2%. From 2015 to 2025, assessment practices remained dominated by post-only designs or no assessment, with no statistically detectable increase in pre/post-capable designs. Use of established assessment instruments was rare, with 94.2% of assessed studies using ad hoc measures or not identifying an established …

Coordinating Meaning With Ai System Cards: A Thematic Analysis, Jennifer Rene French Cyrek

Doctoral Dissertations and Projects

As the meaning of AI risk remains unsettled across sociotechnical and public discourse, AI system cards are an emergent, yet understudied, genre of technical documentation through which AI technology developers publicly frame new AI system capabilities including risks. This thematic content analysis study examines how AI technology developers coordinate meaning regarding risk and responsible development in stewardship of AI. Guided by a constitutive view of communication and systems theory, second-order cybernetics, and the cybernetic tradition, this study analyzes a purposive corpus of AI system cards collected from 2023-2025 using thematic content analysis and the hierarchy of meaning heuristic from coordinated …

New Paradigm Of Forestry And Grassland Research Driven By Artificial Intelligence, Zhang Huaiqing, Jiaojun Zhu, Yang Liu, Tingdong Yang, Tian Gao, Jing Zhang, Xueyan Zhu, Yan Chen, Xian Jiang, Zeyu Cui, Jingwei Tan, Kexin Lei

Bulletin of Chinese Academy of Sciences (Chinese Version)

Addressing the current limitations in forestry and grassland research, particularly in cross-scale system cognition, complex process mechanism representation, and multi-scenario simulation, this study proposes an artificial intelligence-driven paradigm reconstruction framework, to shift the research model from experience-oriented approaches toward data- and intelligence-driven integration. On this basis, the study systematically establishes a multidimensional mapping between artificial intelligence and forestry and grassland research across research objects, processes, and objectives, and clarifies their intrinsic coupling mechanisms and technical pathways. Furthermore, it develops a foundational capability system to support the new paradigm from four key dimensions: data, computing power, models, and applications. By examining …

Understanding And Foresight On Construction Of Foundation Model Industry Innovation Ecosystem, Liu Liu, Chunhui Jia, Yangfan Han, Qiqi Zhang, Jialin Li, Dayuan Li, Junpu Wang

Bulletin of Chinese Academy of Sciences (Chinese Version)

Foundation models are a key vehicle driving artificial intelligence toward general intelligence, and their industrialization urgently requires support from a systematic and collaborative innovation ecosystem. This study focuses on the construction of the foundation model industry innovation ecosystem. It first reviews the frontier progress and identifies its essence as a complex innovation network featuring the three-dimensional synergy of technological, organizational, and industrial architectures, and then analyzes the architecture along the upstream, midstream, and downstream of the industrial chain: the upstream supports computing power and data, the midstream undertakes algorithmic innovation and platform services, and the downstream realizes multi-scenario value transformation. …

Building Ai-Native Innovation System To Drive Transformation And Innovation In Research Organization And Management Models, Hong Xuehai

Bulletin of Chinese Academy of Sciences (Chinese Version)

Artificial intelligence (AI) is profoundly reshaping research paradigms. This study aims to analyze the intrinsic mechanisms through which AI empowers scientific research and its impact on the organizational management models of research. By summarizing what AI can and cannot do in empowering research, it reveals the current effectiveness and capability boundaries of AI in this domain. Based on the extraction of common core conditions for AI-empowered research and the deconstruction of typical cases of AI-enabled research organizational models, this study analyzes the differences between the organizational management model of AI-empowered research and traditional research organizational models. Furthermore, it proposes three …

Insights And Implications Of Ai For Science Strategies Of Major Science And Technology Powers, Zhang Zhiqiang, Yawei Shao

Bulletin of Chinese Academy of Sciences (Chinese Version)

Artificial intelligence (AI) is transitioning from a research aid to a scientific discovery agent. The new paradigm of “AI + Science” (AI for Science, AI4S) – the intelligent science paradigm (or the fifth paradigm of science) – characterized by the deep integration of artificial intelligence into the entire process of scientific discovery, is rapidly emerging and becoming a “new agent” for intelligent and autonomous execution of scientific discovery and technological invention as well as a key force in reshaping the human knowledge production system and the global landscape of technological competition. The intervention of AI in the field of knowledge …

Open Sharing And Collaborative Governance: Practices And Implications Of National Institutes Of Health’S Digital Transformation, Long Yuntao, Bingzhi Wang, Zheping Xu, Yang Wang

Bulletin of Chinese Academy of Sciences (Chinese Version)

With the rapid development of information technology, research projects and tasks of research institutes are increasing rapidly. Scientific and technological resources are the core and foundation of scientific research work, and scientific research institutes are faced with the needs of processing, management and coordination of a large number of scientific and technological resources. Digital transformation has become an inevitable choice for the high-quality development of scientific research institutes. The U.S. National Institutes of Health (NIH), as the world’s top scientific research institute, has continuously introduced a number of initiatives in the field of digital transformation, such as institutional reform policies, …

Ai-Powered Knowledge Engines As Research Infrastructure For Systematic Knowledge Discovery, Gary Welz

Publications and Research

This paper proposes knowledge engines as a framework for understanding how intelligent systems — both human and artificial — systematically discover, integrate, and generate knowledge. We argue that history’s greatest scientific minds functioned as knowledge engines, processing information through iterative cycles of ingestion, analysis, synthesis, and communication, guided by curiosity and willingness to challenge established beliefs.

We propose a taxonomy of nine integrated capabilities — ingestion, digestion, analysis, calculation, comparison, connection, association, analogy, and multimodal communication — that any serious knowledge engine must combine systematically. The argument is deliberately integrative: achieving ambitious research goals requires orchestrating all nine capabilities within …

Can An Ai System Be Creative? A Critical Perspective From Art And Engineering, Ivan Magrin-Chagnolleau

Presidential Fellows Articles and Research

This paper examines the question of whether artificial intelligence (AI) systems can be creative, approached from the dual perspective of a researcher trained in electrical engineering, pattern recognition, machine learning, and neural networks, who has also spent most of his life engaged in the arts as actor, stage and film director, writer, composer, and visual artist, and in philosophy. Drawing on Margaret Boden’s foundational framework — both her three properties of creativity (novelty, surprise, and value) and her three types of creative processes (combinatorial, exploratory, and transformational) — the paper argues that AI systems are structurally incapable of creativity in …

Reproduction Beyond Benchmarks: Constbert And Colbert-V2 Across Backends And Query Distributions, Utshab Kumar Ghosh, Ashish David, Shubham Chatterjee

Computer Science Faculty Research & Creative Works

Reproducibility must validate architectural robustness, not just numerical accuracy. We evaluate ColBERT-v2 and ConstBERT across five dimensions, finding that while ConstBERT reproduces within 0.05% MRR@10 on MS-MARCO, both models show a drop of 86-97% on long, narrative queries (TREC ToT 2025). Ablations prove this failure is architectural: performance plateaus at 20 words because the MaxSim operator's uniform token weighting cannot distinguish signal from filler noise. Furthermore, undocumented backend parameters create an 8-point gap due to ConstBERT's sparse centroid coverage, and fine-tuning with 3x more data actually degrades performance by up to 29%. We conclude that architectural constraints in multi-vector retrieval …

"The First Web Novel At 30: The Collection And The Creative Process", Robert Arellano, Scott Rettberg

ELO (un)supervised 2026

Summer 2026 marks the 30th anniversary of Sunshine '69, recognized as the first novelistic hypertext fiction published on the web. While the full work remains accessible online—an "(un)supervised" preservation achievement in itself—the archive remains split between boxes and memory. This conversation between the work's creator and a major scholar in electronic literature documents both specific preservation challenges and systemic patterns in what the field chooses to preserve.

Topics include: figuring out web-born composition before established methodologies existed; the three decades of technical decisions that kept a 1996 work alive through format obsolescence and server migrations; and what gets lost …

Depro: Understanding The Role Of Llms In Debugging Competitive Programming Code, Nabiha Parvez, Md Tanvin Sarkar Pallab, Mia Mohammad Imran, Tarannum Shaila Zaman

Computer Science Faculty Research & Creative Works

Debugging consumes a substantial portion of the software development lifecycle, yet researchers do not yet understand well the effectiveness of Large Language Models (LLMs) in this task. Competitive programming offers a rich benchmark for such evaluation, given its diverse problem domains and strict efficiency requirements. We present an empirical study of LLM-based debugging on competitive programming problems and introduce DePro, a test-case-driven approach that assists programmers by correcting existing code rather than generating new solutions. DePro combines brute-force reference generation, stress testing, and iterative LLM-guided refinement to efficiently identify and resolve errors. Experiments on 13 faulty user submissions from Codeforces …

Llm-Enabled Open-Source Systems In The Wild: An Empirical Study Of Vulnerabilities In Github Security Advisories, Fariha Tanjim Shifat, Hariswar Baburaj, Ce Zhou, Jaydeb Sarker, Mia Mohammad Imran

Computer Science Faculty Research & Creative Works

Large language models (LLMs) are increasingly embedded in open-source software (OSS) ecosystems, creating complex interactions among natural language prompts, probabilistic model outputs, and execution-capable components. However, it remains unclear whether traditional vulnerability disclosure frameworks adequately capture these model-mediated risks. To investigate this, we analyze 295 GitHub Security Advisories published between January 2025 and January 2026 that reference LLM-related components, and we manually annotate a sample of 100 advisories using the OWASP Top 10 for LLM Applications 2025.We find no evidence of new implementation-level weakness classes specific to LLM systems. Most advisories map to established CWEs, particularly injection and deserialization weaknesses. …

Deciphering The Potential Of Monopterus Albus Protein Hydrolysate As A Therapeutic Candidate Against Cervical Cancer By Integrating Content Analysis, Network Pharmacology, And Molecular Docking, Okid Parama Astirin, Widya Mega Rahmawati, Elisa Herawati, Tetri Widiyani, Lili Pandan Sari, Sherly Octaviana

Karbala International Journal of Modern Science

Cervical cancer has a high incidence rate in women, making the development of cancer drugs increasingly urgent. Asian swamp eel protein hydrolysate shows great promise as an anticancer candidate. This study aimed to reveal the potential of Asian swamp eel protein hydrolysate as an anticancer candidate in the cervix. Asian swamp eel protein hydrolysate was produced by hydrolyzing flesh with the enzyme alcalase. Compounds and peptides were identified using LC-HRMS. These compounds and peptides were analyzed using network pharmacology, gene ontology, and molecular docking. The results identified 153 endogenous compounds, including fatty acids and peptides. The key proteins targeted by …

Compressed Cinema As A Study In Llm Latent Spaces, Mallen Clifton

ELO (un)supervised 2026

In his article “Spec Acts” (2021), Matthew Kirschenbaum analyzes the AI-generated novel 1 the Road to develop his titular concept of the spec act, “the future in its multitudes collapsing into an actionable present.” With the proliferation of texts produced by generative AI and subsequent critical analyses of them, one element in particular calls for further theorization: “the future in its multitudes,” or more directly, the latent space. This echoes arguments by critics such as Antonio Somaini, who offered his own “Theory of Latent Spaces” last year. However, where Somaini’s attention is towards visual culture, I turn mine to the …

From Automation To Adjudication: Evaluating The Role Of Artificial Intelligence In Dispute Settlement, Karem Sayed Aboelazm, Muayad Ahmad Obeidat, Raghda Raafat, Nada Zuhair Alfil, Fady Tawakol

All Works

This paper explores the evolving transition from automation to adjudication by examining the role of artificial intelligence (AI) in dispute settlement processes. It assesses how AI can enhance procedural efficiency, support judicial reasoning, and improve access to justice. Adopting a qualitative and interpretive approach, the study analyzes academic scholarship, policy frameworks, and comparative international practices to understand the integration of AI within judicial and quasi-judicial settings (Abedi et al., 2025). The findings suggest that while AI significantly improves administrative processes and provides valuable decision-support tools, it also raises critical concerns regarding algorithmic bias, lack of transparency, and the risk of …

Observations On Recurrent Loss In The Neural Network Model Of A Partial Differential Equation: The Advection–Diffusion Equation, Jonah A. Reeger

Faculty Publications

A growing body of literature has been leveraging techniques of machine learning (ML) to build novel approaches to approximating the solutions to partial differential equations. Noticeably absent from the literature is a systematic exploration of the stability of the solutions generated by these ML approaches. Here, a recurrent network is introduced that matches precisely the evaluation of a multi-step method paired with a collocation method for approximating spatial derivatives in the advection–diffusion equation. This allows for two things: (1) the use of traditional tools for analyzing the stability of a numerical method for solving PDEs and (2) bringing to bear …

"Todo: Fix The Mess Gemini Created": Towards Understanding Genai-Induced Self-Admitted Technical Debt, Abdullah Al Mujahid, Mia Mohammad Imran

Computer Science Faculty Research & Creative Works

As large language models (LLMs) such as ChatGPT, Copilot, Claude, and Gemini become integrated into software development workflows, developers increasingly leave traces of AI involvement in their code comments. Among these, some comments explicitly acknowledge both the use of generative AI and the presence of technical shortcomings. Analyzing 6,540 LLM-referencing code comments from public Python and JavaScript-based GitHub repositories (November 2022-July 2025), we identified 81 that also self-admit technical debt (SATD). Developers most often describe postponed testing, incomplete adaptation, and limited understanding of AI-generated code, suggesting that AI assistance affects both when and why technical debt emerges. We term GenAI-Induced …

Assessing Flaws In Captcha Security Through Progress In Ai, Jaydon Stanislowski

Scholarly Horizons: University of Minnesota, Morris Undergraduate Journal

Protecting the internet from the threat of malicious bot activity is an important problem as AI tools become more powerful and commonplace over time. To that end, security measures are employed across websites in the form of CAPTCHAs, short challenges designed to identify and block fake web traffic. Yet, they become less effective over time as AI becomes more powerful, and thus more capable of solving them. This paper examines recent research on the threat to CAPTCHA security posed by current AI models and how this security can be reinforced over time, focusing primarily on Google’s reCAPTCHA v3.

Improving Urban Planning Through Agent Based Modeling And Q-Learning, Tristan Kalvoda

Scholarly Horizons: University of Minnesota, Morris Undergraduate Journal

This paper explores the use of agent-based modeling (ABM), enhanced by reinforcement learning techniques such as Q- learning, to optimize urban transportation systems. The focus is on modeling and improving aspects such as traffic design, vehicular flow, and pedestrian mobility. The central research question is how to effectively simulate realistic agent behavior in order to develop models that can inform and support policy-making for more efficient and adaptive urban planning. The paper presents and analyzes simulation-based case studies that demonstrate how learning agents can repro- duce realistic movement patterns and provide insights for larger-scale urban systems.

Zero Trust Architecture And Ransomware Mitigation, Ely Johnson

Scholarly Horizons: University of Minnesota, Morris Undergraduate Journal

Ransomware has become a critical threat to modern enterprises, exploiting excessive privileges and flat network architectures to spread rapidly. Traditional perimeter-based security models are insufficient, as they rely on implicit trust within internal networks. This paper examines how Zero Trust Architecture (ZTA) mitigates ransomware through least privilege access, continuous monitoring, and micro- segmentation. Experimental results show that ZTA can significantly reduce impact, limiting encryption to about 20% of targeted files while preserving most data. Continuous monitoring enables rapid detection (5.3 seconds) with high accuracy (up to 97.2%) and a 78% reduction in false positives. Micro-segmentation further restricts lateral movement, reducing …

Security Limitations Of The Can Bus And Detection Through Power Fingerprinting, Ken Broden

Scholarly Horizons: University of Minnesota, Morris Undergraduate Journal

This paper examines the vulnerabilities of the Controller Area Network (CAN), the standard communication protocol used in most modern vehicles. It explains why CAN is widely adopted and outlines key security weaknesses in its design. The paper then reviews recent research efforts to detect and mitigate these vulnerabilities, with particular focus on an approach to origin authentication that relies on the unique power consumption patterns of each individual electronic control unit on a CAN bus.

Scalefusion: Hierarchical Feature Aggregation For Unified Multiscale Object Detection, Ayşenur Yaylaci, Berru Kaya, Mehmet Kiliçarslan

Turkish Journal of Electrical Engineering and Computer Sciences

Detecting objects across a wide range of scales, particularly small ones, remains a significant challenge in computer vision. Existing methods often improve small object detection at the cost of performance on larger objects or introduce significant computational overhead through external techniques like image slicing. This paper introduces ScaleFusion, a novel, unified, end-to-end object detection architecture designed to provide robust performance across all scales within a single model. The core of our approach is a hierarchical feature aggregation strategy structured like a tree. ScaleFusion processes an image by running a shared backbone network only on fine-grained patches at the lowest level …