Computer Sciences Commons^™

Human Intention Recognition Based Assisted Telerobotic Grasping Of Objects In An Unstructured Environment, Karan Hariharan Khokar

USF Tampa Graduate Theses and Dissertations

In this dissertation work, a methodology is proposed to enable a robot to identify an object to be grasped and its intended grasp configuration while a human is teleoperating a robot towards the desired object. Based on the detected object and grasp configuration, the human is assisted in the teleoperation task. The environment is unstructured and consists of a number of objects, each with various possible grasp configurations. The identification of the object and the grasp configuration is carried out in real time, by recognizing the intention of the human motion. Simultaneously, the human user is assisted to preshape over …

Performance Evaluation And Comparison Of Distributed Messaging Using Message Oriented Middleware, Naveen Mupparaju

UNF Graduate Theses and Dissertations

Message Oriented Middleware (MOM) is an enabling technology for modern event- driven applications that are typically based on publish/subscribe communication [Eugster03]. Enterprises typically contain hundreds of applications operating in environments with diverse databases and operating systems. Integration of these applications is required to coordinate the business process. Unfortunately, this is no easy task. Enterprise Integration, according to Brosey et al. (2001), "aims to connect and combines people, processes, systems, and technologies to ensure that the right people and the right processes have the right information and the right resources at the right time"[Brosey01]. Communication between different applications can be achieved …

Testing A Distributed Denial Of Service Defence Mechanism Using Red Teaming, Samaneh Rastegari, Philip Hingston, Chiou-Peng Lam, Murray Brand

Research outputs 2013

The increased number of security threats against the Internet has made communications more vulnerable to attacks. Despite much research and improvement in network security, the number of denial of service (DoS) attacks has rapidly grown in frequency, severity, and sophistication in recent years. Thus, serious attention needs to be paid to network security. However, to create a secure network that can stay ahead of all threats, detection and response features are real challenges. In this paper, we look at the the interaction between the attacker and the defender in a Red Team/Blue Team exercise. We also propose a quantitative decision …

Usefulness Of Infeasible Solutions In Evolutionary Search: An Empirical And Mathematical Study, Lyndon While, Philip Hingston

Research outputs 2013

When evolutionary algorithms are used to solve constrained optimization problems, the question arises how best to deal with infeasible solutions in the search space. A recent theoretical analysis of two simple test problems argued that allowing infeasible solutions to persist in the population can either help or hinder the search process, depending on the structure of the fitness landscape. We report new empirical and mathematical analyses that provide a different interpretation of the previous theoretical predictions: that the important effect is on the probability of finding the global optimum, rather than on the time complexity of the algorithm. We also …

Mobile Games With Intelligence: A Killer Application?, Philip Hingston, Clare Bates Congdon, Graham Kendall

Research outputs 2013

Mobile gaming is an arena full of innovation, with developers exploring new kinds of games, with new kinds of interaction between the mobile device, players, and the connected world that they live in and move through. The mobile gaming world is a perfect playground for AI and CI, generating a maelstrom of data for games that use adaptation, learning and smart content creation. In this paper, we explore this potential killer application for mobile intelligence. We propose combining small, light-weight AI/CI libraries with AI/CI services in the cloud for the heavy lifting. To make our ideas more concrete, we describe …

Developing An Explanatory Model For The Process Of Online Radicalisation And Terrorism, Robyn Torok

Research outputs 2013

While the use of the internet and social media as a tool for extremists and terrorists has been well documented, understanding the mechanisms at work has been much more elusive. This paper begins with a grounded theory approach guided by a new theoretical approach to power that utilizes both terrorism cases and extremist social media groups to develop an explanatory model of radicalization. Preliminary hypotheses are developed, explored and refined in order to develop a comprehensive model which is then presented. This model utilizes and applies concepts from social theorist Michel Foucault, including the use of discourse and networked power …

Artificial Intelligence And Data Mining: Algorithms And Applications, Jianhong Xia, Fuding Xie, Yong Zhang, Craig Caulfield

Research outputs 2013

Artificial intelligence and data mining techniques have been used in many domains to solve classification, segmentation, association, diagnosis, and prediction problems. The overall aim of this special issue is to open a discussion among researchers actively working on algorithms and applications. The issue covers a wide variety of problems for computational intelligence, machine learning, time series analysis, remote sensing image mining, and pattern recognition. After a rigorous peer review process, 20 papers have been selected from 38 submissions. The accepted papers in this issue addressed the following topics: (i) advanced artificial intelligence and data mining techniques; (ii) computational intelligence in …

A Conceptual Framework For Secure Use Of Mobile Health, Patricia A. Williams, Anthony Maeder

Research outputs 2013

Mobile health is characterised by its diversity of applicability, in a multifaceted and multidisciplinary healthcare delivery continuum. In an environment of rapid change with the increasing development of mobile health, issues related to security and privacy must be well thought out. The different competing tensions in the development of mobile health from the device technologies and associated regulation, to clinical workflow and patient acceptance, require a framework for security that reflects the complex structure of this emerging field. There are three distinct associated elements that require investigation: technology, clinical, and human factors. Each of these elements consists of multiple aspects …

A Method For Identifying Personalized Representations In Web Archives, Mat Kelly, Justin F. Brunelle, Michele C. Weigle, Michael L. Nelson

Computer Science Faculty Publications

Web resources are becoming increasingly personalized — two different users clicking on the same link at the same time can see content customized for each individual user. These changes result in multiple representations of a resource that cannot be canonicalized in Web archives. We identify characteristics of this problem by presenting a potential solution to generalize personalized representations in archives. We also present our proof-of-concept prototype that analyzes WARC (Web ARChive) format files, inserts metadata establishing relationships, and provides archive users the ability to navigate on the additional dimension of environment variables in a modified Wayback Machine.

The 6th Computational Structural Bioinformatics Workshop Introduction, Jing He, Amarda Shehu, Nurit Haspel, Brian Chen

Computer Science Faculty Publications

No abstract provided.

Estimating Loop Length From Cryoem Images At Medium Resolutions, Andrew Mcknight, Dong Si, Kamal Al Nasr, Andrey Chemikov, Nikos Chrisochoides, Jing He

Computer Science Faculty Publications

Background: De novo protein modeling approaches utilize 3-dimensional (3D) images derived from electron cryomicroscopy (CryoEM) experiments. The skeleton connecting two secondary structures such as α-helices represent the loop in the 3D image. The accuracy of the skeleton and of the detected secondary structures are critical in De novo modeling. It is important to measure the length along the skeleton accurately since the length can be used as a constraint in modeling the protein.

Results: We have developed a novel computational geometric approach to derive a simplified curve in order to estimate the loop length along the skeleton. The method was …

Image-Level And Group-Level Models For Drosophila Gene Expression Pattern Annotation, Quian Sun, Sherin Muckatira, Lei Yuan, Shuiwang Ji, Stuart Newfeld, Sudhir Kumar, Jieping Ye

Computer Science Faculty Publications

Background: Drosophila melanogaster has been established as a model organism for investigating the developmental gene interactions. The spatio-temporal gene expression patterns of Drosophila melanogaster can be visualized by in situ hybridization and documented as digital images. Automated and efficient tools for analyzing these expression images will provide biological insights into the gene functions, interactions, and networks. To facilitate pattern recognition and comparison, many web-based resources have been created to conduct comparative analysis based on the body part keywords and the associated images. With the fast accumulation of images from high-throughput techniques, manual inspection of images will impose a serious impediment …

Computational Genetic Neuroanatomy Of The Developing Mouse Brain: Dimensionality Reduction, Visualization, And Clustering, Shuiwang Ji

Computer Science Faculty Publications

Background: The structured organization of cells in the brain plays a key role in its functional efficiency. This delicate organization is the consequence of unique molecular identity of each cell gradually established by precise spatiotemporal gene expression control during development. Currently, studies on the molecular-structural association are beginning to reveal how the spatiotemporal gene expression patterns are related to cellular differentiation and structural development.

Results: In this article, we aim at a global, data-driven study of the relationship between gene expressions and neuroanatomy in the developing mouse brain. To enable visual explorations of the high-dimensional data, we map the in …

Dinosolve: A Protein Disulfide Bonding Prediction Server Using Context-Based Features To Enhance Prediction Accuracy, Ashraf Yaseen, Yaohang Li

Computer Science Faculty Publications

Background: Disulfide bonds play an important role in protein folding and structure stability. Accurately predicting disulfide bonds from protein sequences is important for modeling the structural and functional characteristics of many proteins.

Methods: In this work, we introduce an approach of enhancing disulfide bonding prediction accuracy by taking advantage of context-based features. We firstly derive the first-order and second-order mean-force potentials according to the amino acid environment around the cysteine residues from large number of cysteine samples. The mean-force potentials are integrated as context-based scores to estimate the favorability of a cysteine residue in disulfide bonding state as well as …

A Mesh Generation And Machine Learning Framework For Drosophila Gene Expression Pattern Image Analysis, Wenlu Zhang, Daming Feng, Rongjian Li, Andrey Chernikov, Nikos Chrisochoides, Christopher Osgood, Charlotte Konikoff, Stuart Newfeld, Sudhir Kumar, Shuiwang Ji

Computer Science Faculty Publications

Background: Multicellular organisms consist of cells of many different types that are established during development. Each type of cell is characterized by the unique combination of expressed gene products as a result of spatiotemporal gene regulation. Currently, a fundamental challenge in regulatory biology is to elucidate the gene expression controls that generate the complex body plans during development. Recent advances in high-throughput biotechnologies have generated spatiotemporal expression patterns for thousands of genes in the model organism fruit fly Drosophila melanogaster. Existing qualitative methods enhanced by a quantitative analysis based on computational tools we present in this paper would provide …

Convergence Analysis Of Markov Chain Monte Carlo Linear Solvers Using Ulam--Von Neumann Algorithm, Hao Ji, Michael Mascagni, Yaohang Li

Computer Science Faculty Publications

The convergence of Markov chain--based Monte Carlo linear solvers using the Ulam--von Neumann algorithm for a linear system of the form x = Hx + b is investigated in this paper. We analyze the convergence of the Monte Carlo solver based on the original Ulam--von Neumann algorithm under the conditions that ||H|| < 1 as well as ρ(H) < 1, where ρ(H) is the spectral radius of H. We find that although the Monte Carlo solver is based on sampling the Neumann series, the convergence of Neumann series is not a sufficient condition for the convergence of the Monte Carlo solver. Actually, properties of H are not the only factors determining the convergence of the Monte Carlo solver; the underlying transition probability matrix plays an important role. An improper selection of the transition matrix may result in divergence even though the condition ||H|| <1 holds. However, if the condition ||H|| < 1 is satisfied, we show that there always exist certain transition matrices that guarantee convergence of the Monte Carlo solver. On the other hand, if ρ(H) <1 but ||H|| ≥ 1, the Monte Carlo linear solver may or may not converge. In particular, if the row sum ∑ n/j= 1|H_ij > 1 for every row in H or, more generally, ρ(H⁺) >1, where H⁺ is the nonnegative matrix where H+_ij = |H_ij|, we show that transition matrices leading to convergence of the Monte Carlo solver do not exist. Finally, given …

Conformational Sampling In Template Free Protein Loop Structure Modeling: An Overview, Yaohang Li

Computer Science Faculty Publications

Accurately modeling protein loops is an important step to predict three-dimensional structures as well as to understand functions of many proteins. Because of their high flexibility, modeling the three-dimensional structures of loops is difficult and is usually treated as a "mini protein folding problem" under geometric constraints. In the past decade, there has been remarkable progress in template-free loop structure modeling due to advances of computational methods as well as stably increasing number of known structures available in PDB. This mini review provides an overview on the recent computational approaches for loop structure modeling. In particular, we focus on the …

Intensity-Based Skeletonization Of Cryoem Gray-Scale Images Using A True Segmentation-Free Algorithm, Kamal Al Nasr, Chunmei Liu, Mugizi Rwebangira, Legand Burge, Jing He

Computer Science Faculty Publications

Cryo-electron microscopy is an experimental technique that is able to produce 3D gray-scale images of protein molecules. In contrast to other experimental techniques, cryo-electron microscopy is capable of visualizing large molecular complexes such as viruses and ribosomes. At medium resolution, the positions of the atoms are not visible and the process cannot proceed. The medium-resolution images produced by cryo-electron microscopy are used to derive the atomic structure of the proteins in de novo modeling. The skeletons of the 3D gray-scale images are used to interpret important information that is helpful in de novo modeling. Unfortunately, not all features of the …

Gpu-Optimized Code For Long-Term Simulations Of Beam-Beam Effects In Colliders, Y. Roblin, V. Morozov, B. Terzić, M. Aturban, D. Ranjan, M. Zubair

Computer Science Faculty Publications

We report on the development of the new code for long-term simulation of beam-beam effects in particle colliders. The underlying physical model relies on a matrix-based arbitrary-order symplectic particle tracking for beam transport and the Bassetti-Erskine approximation for beam-beam interaction. The computations are accelerated through a parallel implementation on a hybrid GPU/CPU platform. With the new code, a previously computationally prohibitive long-term simulations become tractable. We use the new code to model the proposed medium-energy electron-ion collider (MEIC) at Jefferson Lab.

A Technical Framework For Resource Synchronization, Martin Klein, Robert Sanderson, Herbert Van De Sompel, Simeon Warner, Bernhard Haslhofer, Carl Lagoze, Michael L. Nelson

Computer Science Faculty Publications

This is the second paper in D-Lib Magazine about the ResourceSync effort conducted by the National Information Standards Organization (NISO) and the Open Archives Initiative (OAI). The first part provided a perspective on the resource synchronization problem and introduced a template that organized possible components of a resource synchronization framework in a modular manner. This paper details a technical framework devised using that template.

Warcreate And Wail: Warc, Wayback, And Heritrix Made Easy, Mat Kelly, Michael L. Nelson, Michele C. Weigle

Computer Science Faculty Publications

[First slide]

The Problem

Institutional Tools, Personal Archivists

• ON YOUR MACHINE

-Complex to Operate

-Require Infrastructure

• DELEGATED TO INSTITUTIONS

-$$$

-Lose original perspective

• Locale content tailoring (DC vs. San Francisco)
• Observation Medium (PC web browser vs. Crawler)

Effects Of Virtual Reality On The Cognitive Memory And Handgun Accuracy Development Of Law Enforcement Neophytes, Richard A. Wright

USF Tampa Graduate Theses and Dissertations

Abstract

The purpose of this research was to investigate the effects of virtual reality training on the development of cognitive memory and handgun accuracy by law enforcement neophytes. One hundred and six academy students from 6 different academy classes were divided into two groups, experimental and control. The experimental group was exposed to virtual reality training for a period of 8 hours. The control group was exposed to the traditional, non-interactive training that occurred on a gun range, also for a period of 8 hours. After exposing the groups to their respective training, a counter-balance technique was utilized to expose …