Computer Sciences Commons^™

Predicting Human Chess Moves With Large Language Models, Benjamin Kreiger

USF Tampa Graduate Theses and Dissertations

As artificial intelligence (AI) surpasses human performance in more tasks, the interest in leveraging and collaborating with this technology for greater productivity continues to grow. However, the black-box nature of current AI can make it difficult to interpret and unsuitable to perform tasks that are more complex and require human intuition. This has led to the pursuit of AI systems that can model individual behavior. Chess offers an ideal environment to explore this task due to its complexity, structure, and the abundance of data containing unique human decision-making examples. Given that a chess game can be fully represented with text, …

Side-Channel Analysis Platform For A Hardware Implementation Of Fips 203 (Crystals-Kyber), Mohamed Mossad

USF Tampa Graduate Theses and Dissertations

In 2024, NIST selected the Post-Quantum Cryptography algorithm CRYSTALS-Kyber for standardization as a public-key encryption, key establishment scheme. CRYSTALS-Kyber was standardized under the Federal Information Processing Standard (FIPS), specifically FIPS 203. FIPS standards represent a set of guidelines, developed by NIST, for secure data handling in federal information systems, mandating cryptographic algorithms that protect sensitive information. This highlights the importance of identifying potential vulnerabilities in the algorithm and assessing how CRYSTALS-Kyber implementations react to hardware side channel attacks. Previous research identified several vulnerabilities in implementations of CRYSTALS-Kyber in software, which were addressed in subsequent releases. This thesis focuses on expanding …

Learning Peer Support Interactions Via Bi-Lstm Graph Neural Networks For Suicide Risk Prediction, Harikrishna Marampelly

USF Tampa Graduate Theses and Dissertations

Suicide prevention through early detection using social media data has been widely studied. However, the critical role of peer support interactions among individuals with similar mental disorders has not been deeply investigated or explored. In this study, we explore peer interactions in online communities for individuals with bipolar disorder and leverage this information to predict suicide risk levels. We propose a model that uses contextualized posts and comments along with their sentiment features. By embedding these features into a peer support network, our model captures peer interactions and predicts suicide risk levels using the bidirectional LSTM Graph Neural Networks (Bi-LSTM …

Assessing The Impact Of Ai Assisted Software Development And User Experience Of A College Football Simulation Game: A Study Of Player And Industry Professional Perspectives, Augustus J. Scarlato Iii

USF Tampa Graduate Theses and Dissertations

This research examines the use of Artificial Intelligence (AI) in the design of video games, specifically the development of a college football simulation game. This study documents the creation of an alpha version college simulation game assisted by Open AI’s Chat GPT 4.0 API, to potentially improve game development, gameplay realism, and user interaction. The study then assesses how both student players and industry professionals perceive AI-enhanced gaming, emphasizing the usability, gameplay experience, and overall quality of the game using a Likert scale survey. The analysis also highlights differences in perceptions between students and industry professionals, with the latter group …

Empowering Entrepreneurial Evolution: A Beyond Founder Strategic Approach To Small Business Growth, D. Jared Knisley

USF Tampa Graduate Theses and Dissertations

Growing a business beyond its founder’s capacities and talents presents a challenging undertaking. When a founder is no longer involved or motivated to grow the business, firm decline is a likely outcome. Small businesses often have a deep and, at times, hindering reliance on their early founders for development. Therefore, a continuous engaging plan to advance entrepreneurial success is needed to grow a small business.

My research objective aims to find methods and designs, through academic literature and practitioner interviews, that transition leadership responsibilities and increase team empowerment within a small business, enabling these firms to continue growing as the …

Assessing Users’ Attention Classification Accuracy From Eeg Data, Gil Olenscki Neto

USF Tampa Graduate Theses and Dissertations

Determining whether a person is attentive while performing a task is a key factor for understanding why they are achieving specific results. In addition, tracking these results is an important aspect to improving them. Quantified self is a field that consists of self-monitoring to gain a better understanding of your habits, health, and overall well-being. Examples of this method include tracking sleep patterns, daily steps, mood swings, and food intake.

This thesis aims to explore the potential of using an innovative self-quantification method that utilizes a mobile application that leverages alpha, beta, and theta waves to assess college students' attention …

Identification And Characterization Of Intrinsically Disordered Protein Regions, Guy Wayne Dayhoff Ii

USF Tampa Graduate Theses and Dissertations

This dissertation investigates protein intrinsic disorder and intrinsically disordered protein regions (IDPRs) through the development and application of advanced computational and experimental techniques. Chapter 1 provides an introduction to protein intrinsic disorder, outlining the historical context and fundamental concepts that highlight the importance of intrinsically disordered proteins (IDPs) and IDPRs in various biological processes. Chapter 2 focuses on the rapid prediction and analysis of protein intrinsic disorder. We introduce RIDAO (Rapid Intrinsic Disorder Analysis Online), a high-efficiency web-based tool that integrates multiple disorder predictors. RIDAO significantly outperforms existing predictors in computational efficiency, making it suitable for large-scale proteomic studies. We …

3d Organ-Scale Models Of Tumor Growth And Treatment, Rafael Ramon Bravo

USF Tampa Graduate Theses and Dissertations

To understand the dynamics of cancer, mathematical oncologists have developed models of tumor growth and treatment response. Some models are mechanistic and approach tumor growth at the cell-scale, focusing on the evolution of cancerous cells within the ecology of normal tissue, and are often simulated with agent-based modeling. Other models are more clinically motivated and model tumor growth operating at the organ-scale, using patient data to predict treatment response, and are often simulated with partial differential equations. We developed the Hybrid Automata Library which includes both agent-based modeling and partial differential equations for modeling at either of these scales. We …

An Inference-Centric Approach To Natural Language Processing And Cognitive Modeling, Animesh Nighojkar

USF Tampa Graduate Theses and Dissertations

Reasoning over natural text is highly nuanced, and interpretations can vary widely depending on cultural background, financial status, age, gender, or even mood. This doctoral dissertation seeks to not only mimic human reasoning behaviors but also improve the task used in natural language processing (NLP) to capture naturalistic reasoning, known as the Natural Language Inference (NLI) task. NLI involves determining whether a hypothesis is true (entailment), false (contradiction), or indeterminate (neutral) based on a given premise. Initially, we will investigate the extent to which NLP systems designed to capture semantic equivalence actually measure meaning equivalence. After establishing that they do …

Reimagining Web Design: Empowering Agency Of Specialized Audiences Through User-Centered Heuristics, Haley Jones

USF Tampa Graduate Theses and Dissertations

This research seeks to create an alternative model for website design that interrogates standardized, linear ways of knowing and being by placing the audience at the center of the web design process. This research contributed a reimagined approach to traditional and standardized web design heuristics by considering an audience-centric methodology that was practical and applicable for web design praxis to create equitable user experiences which can empower audiences to recall their own knowledge and experience to make meaning for themselves through a reimagining of knowledge-making processes in a network of digitized information. In perceiving the rhetorical choice in design of …

From Graph Theory For Robust Deep Networks To Graph Learning For Multimodal Cancer Analysis, Asim Waqas

USF Tampa Graduate Theses and Dissertations

This dissertation explores the intersection of graph theory and deep learning, focusing on enhancing the robustness of deep neural networks (DNNs) and applying these advancements to complex problems like cancer diagnosis and treatment. We investigate the structural properties of graphs and their influence on neural network performance, particularly in multimodal learning. The work delves into the design space of DNN architectures using graph-theoretic measures, transforming graphs into DNN architectures for various tasks, and examining their robustness against noise and adversarial attacks. The study extends to medical imaging, highlighting advanced DNN architectures like U-Net for brain tumor segmentation. It addresses the …

Transforming Organizational Cyber Security With Artificial Intelligence And Data-Driven Optimization, Soumyadeep Hore

USF Tampa Graduate Theses and Dissertations

This dissertation presents a comprehensive framework for enhancing organizational cybersecurity through data-driven intelligence. The research integrates multiple methodologies to tackle challenges in network intrusion detection and vulnerability management within cybersecurity operations centers (CSOCs). First, the research investigates vulnerability prioritization and mitigation techniques currently employed by CSOCs. To further streamline the vulnerability prioritization and mitigation process a machine learning (ML)-based Vulnerability Priority Scoring System (VPSS) is introduced, significantly improving the prioritization and mitigation of context-sensitive vulnerabilities. The VPSS outperforms traditional methods, reducing the cumulative vulnerability exposure score by up to 30% by considering both organizational context and vulnerability severity. Next, the …

Optimizing Cybersecurity Operations Using Data-Driven Intelligence, Jalal Ghadermazi

USF Tampa Graduate Theses and Dissertations

Cybersecurity operations centers (CSOCs) play a crucial role in safeguarding organizations from cyber threats. CSOC operations are divided into two main areas: Intrusion detection systems (IDS) and security response team (SRT) operations. Machine learning (ML) and deep learning (DL) advancements have significantly improved IDSs. IDS can be either flow-based, suitable for offline analysis, or packet-based, which analyze traffic in real-time. However, packet-based IDS often treat packets independently, ignoring the sequential nature of network communication. Additionally, recent ML/DL approaches also struggle with capturing global and structural information and novel attack detection due to their reliance on labeled data. The SRT within …

A Robust Data-Driven Framework For Artificial Intelligent Systems, Quoc H. Nguyen

USF Tampa Graduate Theses and Dissertations

Artificial Intelligence (AI) systems have demonstrated remarkable performance across various domains. However, their robustness remains a critical concern, particularly in terms of data and model reliability. This dissertation aims to address the challenges associated with building robust AI systems by focusing on two key aspects: data robustness and model robustness. Data robustness poses significant challenges, including data shift, concept shifting, limited and imbalanced datasets, and interoperability issues in IoT systems for data collection. Existing methods fall short in handling dynamic business objectives and evolving data landscapes effectively. To bridge these gaps, we propose an IoT framework that ensures interoperability, seamless …

Anonymized Identity Recognition And Classification Using Privacy Preserving Facial Encoding, Manas Sanjay Pakalapati

USF Tampa Graduate Theses and Dissertations

The need for sharing large-scale datasets to train deep neural network models, particularly in healthcare, raises significant data security and privacy concerns. To address these issues, methods such as data encryption or encoding are utilized. These techniques can encrypt the data and make it unreadable to humans, while still retaining its usefulness for training models.

In this study, we investigate various image encoding techniques designed to protect privacy by making images unrecognizable while still retaining their usefulness for model training. Our investigation utilized publicly available facial databases and focused on evaluating the trade-offs inherent in image encoding techniques, with a …

Specification, Enforcement, And Measurement Of Integrity Policies, Kevin Dennis

USF Tampa Graduate Theses and Dissertations

The first step to improving an organization's security posture is to define the organization's security goals. At a technical level, these goals are expressed as security policies. Security policies are predicates over programs, that return true or false if the program adheres to the policy. Defining these policies correctly is thus essential to ensuring the overarching security goals are met, but it is often quite difficult to translate human-oriented goals into their technical policy counterparts. In addition, these policies must be specified so that they are enforceable while minimizing false positives and false negatives. Integrity policies, which specify how data …

High-Performance Computing In Next-Generation Sequencing Read Alignment, Minh H. Pham

USF Tampa Graduate Theses and Dissertations

Advancements in Next-Generation Sequencing (NGS) have dramatically reduced the cost and increased the speed of DNA sequencing. However, this rapid influx of data necessitates efficient and robust analysis tools, particularly for the complex task of aligning short NGS reads to reference genomes such as the human genome. We explore groundbreaking computational strategies and hardware acceleration to optimize this critical alignment process. This dissertation is structured around three innovative studies. First, we introduce a novel approach to dynamic memory allocation tailored for massively parallel systems, particularly Graphical Processing Units (GPUs), to support NGS alignment and other applications. Unlike traditional memory allocators …

Context-Aware Affective Behavior Modeling And Analytics, Md Taufeeq Uddin

USF Tampa Graduate Theses and Dissertations

Affective computing (AC) is a sub-domain of AI that has the potential to assist people by assessing mental states and making appropriate recommendations to patients, loved ones, caregivers, and domain experts. Humans usually produce an enormous amount of data (such as face videos) every day. One of the major challenges for affective computer vision is to efficiently deal with high volumes of data to facilitate automated model development. To cope with this challenge, we developed computer vision algorithms that measure the expressivity of the human face from video data. More precisely, the developed algorithms can map complex affect information from …

Advancing Text Summarization And Classification: Deep Insights From Transformer-Based Statistical Learning, Kun Bu

USF Tampa Graduate Theses and Dissertations

Artificial Intelligence (AI) is a part of human's daily life nowadays. Machine Learning (ML) as one aspect from AI has been rapidly developing during the past two decades, especially from the statistical learning approaches, which emphasized the use of probability and statistics to model data, such as Support Vector Machines (SVMs) for classification and regression tasks to the ensemble learning techniques, such as Random Forest, Gradient Boosting Machine (GBM), and stacking. Ensemble learning has evolved into a pivotal concept in contemporary machine learning, empowering practitioners to amalgamate multiple models to enhance generalization, accuracy, and robustness. As the field of machine …

Individual Behavioral Modeling Across Games Of Strategy, Logan Fields

USF Tampa Graduate Theses and Dissertations

An individual’s actions in a particular environment and with specified resources can reveal their decision-making tendencies and patterns, and by analyzing the variations in cognitive traits among individuals, it may be possible to identify trends that can foretell their future behaviors. This can be a powerful tool in various fields including cognitive modeling, player analytics, computer security, and threat detection. Collectible card games are a fruitful test space for studying cognitive differences in decision-making, as they can have clearly defined and replicable environments and large player bases. As such, in this work, I explore the potential of using two virtual …

A Gateway To Next-Generation Patient Monitoring System, Kishore Kumar Kadari

USF Tampa Graduate Theses and Dissertations

Healthcare patient monitoring is undergoing a significant digital transformation, and the integration of Cyber-Physical Systems (CPS) and Artificial Intelligence (AI) is becoming increasingly crucial in reshaping patient care. In an era where digital technology is revolutionizing medical practices, this research aims to take a leading role in advancing a fundamental aspect of predictive and sustainable healthcare practices, enhancing patient outcomes and uplifting the practice of medicine.

This research focuses on the study of Digital Twins for precision health, which are designed to monitor and provide intricate, personalized feedback dynamically during a patient's healthcare experience. The architecture of the system is …

Home Is Where The Work Is: How Biases In Managers’ Resource Allocation Decisions Affect Task Performance In Remote Work Environments, Richard D. Mautz Iii

USF Tampa Graduate Theses and Dissertations

As the use of remote and hybrid work arrangements continues to grow, it is important to understand how these arrangements can yield performance. In this paper, I conduct two studies to examine how the remote work environment affects managers’ task assignment decisions across different task types and how those decisions affect workers’ task performance. First, I survey managers, in both a cross-section of industries and specifically in accounting, to study the effect of remote work on their task assignment decisions. Consistent with prior literature and economic theory, I predict and find that managers are more inclined to assign generative tasks …

Improving Medical Image Classification Accuracy Through Unsupervised Segmentation And Confounder Mitigation With Limited Data, Nikolai Fetisov

USF Tampa Graduate Theses and Dissertations

Medical images are indispensable for assisting health care professionals to make more accurate cancer diagnosis and prognosis decisions. Several image modalities exist including, but not limited to, histopathology or whole slide images (WSI), computed tomography (CT), positron emission tomography (PET) and radiography (i.e., X-Ray), each having their own application in clinical practice.

Today, machine learning and deep learning methods have evolved to the point of being practically usable. These approaches learn and extract knowledge from data to make possible automating certain tasks. At the point of writing this dissertation, they have reached human-level performance in general image recognition tasks, became …

Automatic Image-Based Nutritional Calculator App, Kejvi Cupa

USF Tampa Graduate Theses and Dissertations

Nutrition plays a pivotal role in shaping an individuals’ health and quality of life, making the evaluation of dietary intake crucial for promoting healthier lifestyle choices. Various solutions, particularly mobile apps, have been developed to facilitate the process of dietary estimation. Accurate nutritional intake assessment relies on two key components: ingredient recognition and food portion estimation. For a mobile app to offer a comprehensive solution for automatic nutritional assessment, it must address both components.

In this work, we focus on a mobile app pipeline: the semi-automatic pipeline which focuses on automatic food ingredient recognition. This pipeline integrates state-of-the-art models for …

Semi-Automated Cell Annotation Framework Using Deep Learning, Abhiram Kandiyana

USF Tampa Graduate Theses and Dissertations

Unbiased stereology refers to a field of applied mathematics \cite{intro-to-stereology} focused on accurate (model and assumption-free) quantification of three-dimensional (3D) objects, typically based on their appearance in 2D sections (planes) through the objects. In the biological sciences, these techniques are widely used for making unbiased estimates of arbitrary-shaped (stochastic) objects such as stained cells, blood vessels, region volumes, etc., in tissue sections through a region of interest (ROI).

This fundamental methodology is widely used for evaluating structural changes that occur in diseases, aging, and pharmaceutical interventions, thereby ensuring reliable outcomes. In terms of limitations, stereology is tedious, time- and labor-intensive, …

Predicting Gender Of Author Using Large Language Models (Llms), Satya Uday Sanku

USF Tampa Graduate Theses and Dissertations

The advent of text data from social media, blogs, movie reviews, and other textual sources has opened new avenues for research, particularly in the domain of Author Profiling. Author Profiling helps in Capturing the Stylistic features and also useful for analyzing the required elements in the written text. This Study addresses one of the tasks in Author Profiling which is termed as gender detection or Classification of Gender from Text. The main goal of this research is to obtain valuable and relevant gender characteristics that will accurately classify the Author’s gender of a review extracted from an Anime Review website. …

Brain-Inspired Spatio-Temporal Learning With Application To Robotics, Thiago André Ferreira Medeiros

USF Tampa Graduate Theses and Dissertations

The human brain still has many mysteries and one of them is how it encodes information. The following study intends to unravel at least one such mechanism. For this it will be demonstrated how a set of specialized neurons may use spatial and temporal information to encode information. These neurons, called Place Cells, become active when the animal enters a place in the environment, allowing it to build a cognitive map of the environment. In a recent paper by Scleidorovich et al. in 2022, it was demonstrated that it was possible to differentiate between two sequences of activations of a …

All Quiet On The Digital Front: The Unseen Psychological Impacts On Cybersecurity First Responders, Tammie R. Hollis

USF Tampa Graduate Theses and Dissertations

Driven by the increasing frequency of cyberattacks and the existing talent gap between industry needs and skilled professionals, this research study focused on the crucial human element in the domain of cybersecurity incident response. The objective of this dissertation was to offer a meaningful exploration of the lived experiences encountered by cybersecurity incident responders and an assessment of the subsequent impacts on their well-being. Additionally, this study sought to draw comparisons between the experiences of cybersecurity incident responders and their counterparts in traditional emergency response roles. Semi-structured interviews were conducted with a cohort of 22 individuals with first-hand experience working …

Machine Learning For Electronic Design Automation: Specification Mining And High-Level Synthesis, Md Rubel Ahmed

USF Tampa Graduate Theses and Dissertations

The rapid growth of complex system-on-chip (SoC) designs has presented unprecedented opportunities and challenges in electronic design automation (EDA). This dissertation explores two facets of electronic design automation: message flow specification mining using data mining and natural language processing (NLP) and high-level synthesis (HLS) acceleration using different machine learning (ML) methods. It also discusses an ML model co-optimization method for energy-efficient hardware implementation.

Effective SoC design validation relies heavily on message flow specifications. This dissertation presents an efficient technique for synthesizing finite state automaton (FSA) models from SoC execution traces. The synthesized models can provide valuable insights into the on-chip …

Refining The Machine Learning Pipeline For Us-Based Public Transit Systems, Jennifer Adorno

USF Tampa Graduate Theses and Dissertations

According to the Population Division of the United Nations, in the United States, almost 90% of the population will live in urban areas by the year 2050. As the population in a given area increases, higher traffic congestion follows due to an increase of vehicles in the road. A possible way to alleviate congestion could be with widespread use of public transit. However, according to the US Census Bureau, the percentage of individuals commuting through public transportation has been decreasing steadily over time, and the American Community Survey reports that during 2019, only around five percent of the US population …