Computer Sciences Commons^™

The R Journal (July 2018) 10(1): Complete Issue, The R Foundation

The R Journal

Editorial, John Verzani

Contributed Research Articles

A System for an Accountable Data Analysis Process in R, Jonathan Gelfond, Martin Goros, Brian Hernandez and Alex Bokov

RealVAMS: An R Package for Fitting a Multivariate Value-added Model (VAM), Jennifer Broatch, Jennifer Green, and Andrew Karl

InfoTrad: An R Package for Estimating the Probability of Informed Trading, Duygu Çelik and Murat Tiniç

RatingScaleReduction Package: Stepwise Rating Scale Item Reduction without Predictability Loss, Waldemar W. Koczkodaj, Feng Li, and Alicja Wolny-Dominiak

mmpf: Monte-Carlo Methods for Prediction Functions, Zachary M. Jones

Generalized Additive Model Multiple Imputation by Chained Equations with Package ImputeRobust, Daniel Salfran and …

Stackelberg Security Games: Looking Beyond A Decade Of Success, Arunesh Sinha, Fei Fang, Bo An, Christopher Kiekintveld, Milind Tambe

Research Collection School Of Computing and Information Systems

The Stackelberg Security Game (SSG) model has been immensely influential in security research since it was introduced roughly a decade ago. Furthermore, deployed SSG-based applications are one of most successful examples of game theory applications in the real world. We present a broad survey of recent technical advances in SSG and related literature, and then look to the future by highlighting the new potential applications and open research problems in SSG.

Static Analysis Of Context Leaks In Android Applications, Flavio Toffalini, Jun Sun, Martín Cohoa

Research Collection School Of Computing and Information Systems

Android native applications, written in Java and distributed in APK format, are widely used in mobile devices. Their specific pattern of use lets the operating system control the creation and destruction of key resources, such as activities and services (contexts). Programmers are not supposed to interfere with such lifecycle events. Otherwise contexts might be leaked, i.e. they will never be deallocated from memory, or be deallocated too late, leading to memory exhaustion and frozen applications. In practice, it is easy to write incorrect code, which hinders garbage collection of contexts and subsequently leads to context leakage.In this work, we present …

Overfitting In Automated Program Repair: Challenges And Solutions, Dinh Xuan Bach Le

Dissertations and Theses Collection (Open Access)

This chapter discusses the main problem and motivation of this dissertation. It also discusses a quantification of various research issues directly related to the dissertation. A summary of works done will also be presented along with the structure of the dissertation.

Funqual: User-Defined, Statically-Checked Call Graph Constraints In C++, Andrew P. Nelson

Master's Theses

Static analysis tools can aid programmers by reporting potential programming mistakes prior to the execution of a program. Funqual is a static analysis tool that reads C++17 code ``in the wild'' and checks that the function call graph follows a set of rules which can be defined by the user. This sort of analysis can help the programmer to avoid errors such as accidentally calling blocking functions in time-sensitive contexts or accidentally allocating memory in heap-sensitive environments. To accomplish this, we create a type system whereby functions can be given user-defined type qualifiers and where users can define their own …

Compiler Optimization Effects On Register Collisions, Jonathan S. Tan

Master's Theses

We often want a compiler to generate executable code that runs as fast as possible. One consideration toward this goal is to keep values in fast registers to limit the number of slower memory accesses that occur. When there are not enough physical registers available for use, values are ``spilled'' to the runtime stack. The need for spills is discovered during register allocation wherein values in use are mapped to physical registers. One factor in the efficacy of register allocation is the number of values in use at one time (register collisions). Register collision is affected by compiler optimizations that …

An Empirical Study Of Alias Analysis Techniques, Andrew T. Tran

Master's Theses

As software projects become larger and more complex, software optimization at that scale is only feasible through automated means. One such component of software optimization is alias analysis, which attempts to determine which variables in a program refer to the same area in memory, and is used to relocate instructions to improve performance without interfering with program execution. Several alias analyses have been proposed over the past few decades, with varying degrees of precision and time and space complexity, but few studies have been conducted to compare these techniques with one another, nor to measure with program data to confirm …

Poster: Towards Safe Refactoring For Intelligent Parallelization Of Java 8 Streams, Yiming Tang, Raffi Khatchadourian, Mehdi Bagherzadeh, Syed Ahmed

Publications and Research

The Java 8 Stream API sets forth a promising new programming model that incorporates functional-like, MapReduce-style features into a mainstream programming language. However, using streams correctly and efficiently may involve subtle considerations. In this poster, we present our ongoing work and preliminary results towards an automated refactoring approach that assists developers in writing optimal stream code. The approach, based on ordering and typestate analysis, determines when it is safe and advantageous to convert streams to parallel and optimize a parallel streams.

Less-Java, More Learning: Language Design For Introductory Programming, Zamua Nasrawt

Senior Honors Projects, 2010-2019

Less-Java is a new procedural programming language with static, strong, and inferred typing, native unit testing, and support for basic object-oriented constructs. These features make programming in Less-Java more intuitive than traditional introductory languages, which will allow professors to dedicate more class time to overarching computer science concepts and less to syntax and language-specific quirks.

Designing Smart Applications Using Ar (Augmented Reality), Kimberly A. De La Santa

Publications and Research

Augmented Reality is rapidly developing in popularity because it brings elements of the virtual world, into our real world. Augmented Reality (AR) is a variation of Virtual Reality (VR). VR technologies immerses a user inside an imaginary environment. While immersed, the user cannot see the real world around them. In contrast, AR allows the user to see the real world, with virtual objects and information intertwined. Therefore, AR supplements reality and enhances the things we see, hear, and feel. This research project will implement a Web page that gives the user the opportunity to experiment with AR.

Tamscript - High Level Programming Interface For The Abstract Tile Assembly Model, Perry Mills

Computer Science and Computer Engineering Undergraduate Honors Theses

This paper describes a programming interface, TAMScript, for use with the PyTAS simulator. The interface allows for the dynamic generation of tile types as the simulation progresses, with the goal of reducing complexity for researchers. This paper begins with an introduction to the PyTAS software and a description of the 3D model which it simulates. Next, the changes made to support a dynamic generation scheme are detailed, and some of the potential benefits of this scheme are outlined. Then several of the example scripts which have been written using the TAMScript interface are reviewed. Finally, the potential for future research …

Comparative Study Of Deep Learning Models For Network Intrusion Detection, Brian Lee, Sandhya Amaresh, Clifford Green, Daniel Engels

SMU Data Science Review

In this paper, we present a comparative evaluation of deep learning approaches to network intrusion detection. A Network Intrusion Detection System (NIDS) is a critical component of every Internet connected system due to likely attacks from both external and internal sources. A NIDS is used to detect network born attacks such as Denial of Service (DoS) attacks, malware replication, and intruders that are operating within the system. Multiple deep learning approaches have been proposed for intrusion detection systems. We evaluate three models, a vanilla deep neural net (DNN), self-taught learning (STL) approach, and Recurrent Neural Network (RNN) based Long Short …

Proactive Empirical Assessment Of New Language Feature Adoption Via Automated Refactoring: The Case Of Java 8 Default Methods, Raffi Khatchadourian, Hidehiko Masuhara

Publications and Research

Programming languages and platforms improve over time, sometimes resulting in new language features that offer many benefits. However, despite these benefits, developers may not always be willing to adopt them in their projects for various reasons. In this paper, we describe an empirical study where we assess the adoption of a particular new language feature. Studying how developers use (or do not use) new language features is important in programming language research and engineering because it gives designers insight into the usability of the language to create meaning programs in that language. This knowledge, in turn, can drive future innovations …

Proactive Empirical Assessment Of New Language Feature Adoption Via Automated Refactoring: The Case Of Java 8 Default Methods, Raffi Khatchadourian, Hidehiko Masuhara

Publications and Research

Programming languages and platforms improve over time, sometimes resulting in new language features that offer many benefits. However, despite these benefits, developers may not always be willing to adopt them in their projects for various reasons. In this paper, we describe an empirical study where we assess the adoption of a particular new language feature. Studying how developers use (or do not use) new language features is important in programming language research and engineering because it gives designers insight into the usability of the language to create meaning programs in that language. This knowledge, in turn, can drive future innovations …

Artificial Intelligence: An Analysis Of Alan Turing’S Role In The Conception And Development Of Intelligent Machinery, Erika L. Furtado

Selected Honors Theses

The purpose of this thesis is to follow the thread of Alan Turing’s ideas throughout his decades of research and analyze how his predictions have come to fruition over the years. Turing’s Computing Machinery and Intelligence is the paper in which the Turing Test is described as an alternative way to answer the question “can machines think?” (Turing 433). Since the development of Turing’s original paper, there has been a tremendous amount of advancement in the field of artificial intelligence. The field has made its way into art classification as well as the medical industry. The main concept researched in …

A Utp Semantics For Communicating Processes With Shared Variables And Its Formal Encoding In Pvs, Ling Shi, Yongxin Zhao, Yang Liu, Jun Sun, Jin Song Dong, Shengchao Qin

Research Collection School Of Computing and Information Systems

CSP# (communicating sequential programs) is a modelling language designed for specifying concurrent systems by integrating CSP-like compositional operators with sequential programs updating shared variables. In this work, we define an observation-oriented denotational semantics in an open environment for the CSP# language based on the UTP framework. To deal with shared variables, we lift traditional event-based traces into mixed traces which consist of state-event pairs for recording process behaviours. To capture all possible concurrency behaviours between action/channel-based communications and global shared variables, we construct a comprehensive set of rules on merging traces from processes which run in parallel/interleaving. We also define …

Introducing Basic Programming To Pre-University Students: A Successful Initiative In Singapore, Heng Ngee Mok, Vandana Ramachandra Rao

Research Collection School Of Computing and Information Systems

“Let’s Code!” is an intensive 3-week basic programming course that aims to formally expose pre-university students in Singapore to programming. This course was conducted in blended-learning format, and included lecture videos, self-check quizzes, video conferences, meet-up tutorials and take-home programming assignments. The authors hope to capture the experience gained from running this course for educators who intend to implement similar courses in the future. Besides a detailed description of this course, significant changes that were made based on feedback from participants and members of the teaching team are documented here.

Combined Classifier For Cross-Project Defect Prediction: An Extended Empirical Study, Yun Zhang, David Lo, Xin Xia, Jianling Sun

Research Collection School Of Computing and Information Systems

To help developers better allocate testing and debugging efforts, many software defect prediction techniques have been proposed in the literature. These techniques can be used to predict classes that are more likely to be buggy based on past history of buggy classes. These techniques work well as long as a sufficient amount of data is available to train a prediction model. However, there is rarely enough training data for new software projects. To deal with this problem, cross-project defect prediction, which transfers a prediction model trained using data from one project to another, has been proposed and is regarded as …

Poster: Towards Safe Refactoring For Intelligent Parallelization Of Java 8 Streams, Yiming Tang, Raffi Khatchadourian, Mehdi Bagherzadeh, Syed Ahmed

Publications and Research

The Java 8 Stream API sets forth a promising new programming model that incorporates functional-like, MapReduce-style features into a mainstream programming language. However, using streams correctly and efficiently may involve subtle considerations. In this poster, we present our ongoing work and preliminary results to- wards an automated refactoring approach that assists developers in writing optimal stream code. The approach, based on ordering and typestate analysis, determines when it is safe and advantageous to convert streams to parallel and optimize a parallel streams.

Keep It Simple, Keep It Safe - Research On The Impacts Of Increasing Complexity Of Modern Enterprise Applications, Shawn Ware, David Phillips

UNO Student Research and Creative Activity Fair

As the Cybersecurity program within UNO continues to adapt to the ever-changing world of information systems and information security, the Cybersecurity Capstone has recently become an active, community-involvement project, where real-world organizations can receive valuable, useful research and information from students on their way towards a degree. This presentation encompasses two such projects from the Cybersecurity Capstone, looking at how modern, more complex systems can often increase system vulnerability.

Scaling Human Activity Recognition Via Deep Learning-Based Domain Adaptation, Md Abdullah Hafiz Khan, Nirmalya Roy, Archan Misra

Research Collection School Of Computing and Information Systems

We investigate the problem of making human activityrecognition (AR) scalable–i.e., allowing AR classifiers trainedin one context to be readily adapted to a different contextualdomain. This is important because AR technologies can achievehigh accuracy if the classifiers are trained for a specific individualor device, but show significant degradation when the sameclassifier is applied context–e.g., to a different device located ata different on-body position. To allow such adaptation withoutrequiring the onerous step of collecting large volumes of labeledtraining data in the target domain, we proposed a transductivetransfer learning model that is specifically tuned to the propertiesof convolutional neural networks (CNNs). Our model, …

When Good Components Go Bad: Formally Secure Compilation Despite Dynamic Compromise, Guglielmo Fachini, CăTăLin Hriţcu, Marco Stronati, Arthur Azevedo De Amorim, Carmine Abate, Roberto Blanco, Théo Laurent, Benjamin C. Pierce, Andrew Tolmach

Computer Science Faculty Publications and Presentations

We propose a new formal criterion for secure compilation, giving strong end-to-end security guarantees for software components written in unsafe, low-level languages with C-style undefined behavior. Our criterion is the first to model dynamic compromise in a system of mutually distrustful components running with least privilege. Each component is protected from all the others—in particular, from components that have encountered undefined behavior and become compromised. Each component receives secure compilation guarantees up to the point when it becomes compromised, after which an attacker can take complete control over the component and use any of its privileges to attack the remaining …

On The Use Of Semantic-Based Aig To Automatically Generate Programming Exercises, Laura Zavala, Benito Mendoza

Publications and Research

In introductory programming courses, proficiency is typically achieved through substantial practice in the form of relatively small assignments and quizzes. Unfortunately, creating programming assignments and quizzes is both, time-consuming and error-prone. We use Automatic Item Generation (AIG) in order to address the problem of creating numerous programming exercises that can be used for assignments or quizzes in introductory programming courses. AIG is based on the use of test-item templates with embedded variables and formulas which are resolved by a computer program with actual values to generate test-items. Thus, hundreds or even thousands of test-items can be generated with a single …

Vt-Revolution: Interactive Programming Video Tutorial Authoring And Watching System, Lingfeng Bao, Zhenchang Xing, Xin Xia, David Lo

Research Collection School Of Computing and Information Systems

Procedural knowledge describes actions and manipulations that are carried out to complete programming tasks. An effective way to document procedural knowledge is programming video tutorials. Existing solutions to adding interactive workflow and elements to programming videos have a dilemma between the level of desired interaction and the efforts required for authoring tutorials. In this work, we tackle this dilemma by designing and building a programming video tutorial authoring system that leverages operating system level instrumentation to log workflow history while tutorial authors are creating programming videos, and the corresponding tutorial watching system that enhances the learning experience of video tutorials …

Relating Justification Logic Modality And Type Theory In Curry–Howard Fashion, Konstantinos Pouliasis

Dissertations, Theses, and Capstone Projects

This dissertation is a work in the intersection of Justification Logic and Curry--Howard Isomorphism. Justification logic is an umbrella of modal logics of knowledge with explicit evidence. Justification logics have been used to tackle traditional problems in proof theory (in relation to Godel's provability) and philosophy (Gettier examples, Russel's barn paradox). The Curry--Howard Isomorphism or proofs-as-programs is an understanding of logic that places logical studies in conjunction with type theory and -- in current developments -- category theory. The point being that understanding a system as a logic, a typed calculus and, a language of a class of categories constitutes …

Extended Abstract: Explaining Type Errors, Brent A. Yorgey, Richard A. Eisenberg, Harley D. Eades Iii

Computer Science Faculty Research and Scholarship

No abstract provided.

A Malware Analysis And Artifact Capture Tool, Dallas Wright, Josh Stroschein

Research & Publications

Malware authors attempt to obfuscate and hide their code in its static and dynamic states. This paper provides a novel approach to aid analysis by intercepting and capturing malware artifacts and providing dynamic control of process flow. Capturing malware artifacts allows an analyst to more quickly and comprehensively understand malware behavior and obfuscation techniques and doing so interactively allows multiple code paths to be explored. The faster that malware can be analyzed the quicker the systems and data compromised by it can be determined and its infection stopped. This research proposes an instantiation of an interactive malware analysis and artifact …

Algorithmic Music Generation For Pedagogy Of Sight Reading, Ryan Stephen Davis

Electronic Theses and Dissertations

Autodeus is the name of the program that has been developed and was designed to aid guitar students in the attainment and betterment of musical notation sight reading skills. Its primary goal is to provide a very flexible tool that has the ability to generate virtually endless types of sight reading exercises at many various skill levels.

A complimentary 2 year-long comprehensive guitar sight-reading course syllabus can be implemented via Autodeus as it is capable of generating all the necessary exercises. It is able to generate these exercises quickly and efficiently through the use of a back tracking algorithm that …

Space Operations In The Suborbital Space Flight Simulator And Mission Control Center: Lessons Learned With Xcor Lynx, Pedro Llanos, Christopher Nguyen, David Williams, Kim O. Chambers, Erik Seedhouse, Robert Davidson

Journal of Aviation/Aerospace Education & Research

This study was conducted to better understand the performance of the XCOR Lynx vehicle. Because the Lynx development was halted, the best knowledge of vehicle dynamics can only be found through simulator flights. X-Plane 10 was chosen for its robust applications and accurate portrayal of dynamics on a vehicle in flight. The Suborbital Space Flight Simulator (SSFS) and Mission Control Center (MCC) were brought to the Applied Aviation Sciences department in fall 2015 at Embry-Riddle Aeronautical University, Daytona Beach campus. This academic and research tool is a department asset capable of providing multiple fields of data about suborbital simulated flights. …

Slade: A Smart Large-Scale Task Decomposer In Crowdsourcing, Yongxin Tong, Lei Chen, Zimu Zhou, H. V. Jagadish, Lidan Shou

Research Collection School Of Computing and Information Systems

Crowdsourcing has been shown to be effective in a wide range of applications, and is seeing increasing use. A large-scale crowdsourcing task often consists of thousands or millions of atomic tasks, each of which is usually a simple task such as binary choice or simple voting. To distribute a large-scale crowdsourcing task to limited crowd workers, a common practice is to pack a set of atomic tasks into a task bin and send to a crowd worker in a batch. It is challenging to decompose a large-scale crowdsourcing task and execute batches of atomic tasks, which ensures reliable answers at …