Computer Sciences Commons^™

Evaluation Of Traceability Management Tools For Student Software Development, Abi Kunkle

Summer Community of Scholars Posters (RCEU and HCR Combined Programs)

No abstract provided.

The Data Science Corps Wrangle-Analyze- Visualize Program: Building Data Acumen For Undergraduate Students, Nicholas J. Horton, Benjamin Baumer, Andrew Zieffler, Valerie Barr

Statistical and Data Sciences: Faculty Publications

We congratulate Kolaczyk, Wright, and Yajima on their innovative statistics practicum that places “practice” at the center of data science education (Kolaczyk et al., 2021, this issue). Their year-long practicum course focuses on the data science life cycle with engagement with external partners and university consulting projects. We agree that training postgraduates in practice needs to be foregrounded in the curriculum in order for students to develop necessary depth in data science practice.

Understanding The Research And Applications Of Quantum Computing, Joshua Foss

Williams Honors College, Honors Research Projects

In-Depth research of current quantum computing understanding and practices. Presentation of possible new and creative applications of quantum computing.

Towards Effective Delivery Of Digital Interventions For Mental And Behavioral Health, Varun Mishra

Dartmouth College Ph.D Dissertations

The pervasiveness of sensor-rich mobile, wearable, and IoT devices has enabled researchers to passively sense various user traits and characteristics, which in turn have the potential to detect and predict different mental and behavioral health outcomes. Upon detecting or anticipating a negative outcome, the same devices can be used to deliver in-the-moment interventions and support to help users. One important factor that determines the effectiveness of digital health interventions is delivering them at the right time: (1) when a person needs support, i.e., at or before the onset of a negative outcome, or a psychological or contextual state that might …

Game-Theoretic Analysis Of Effort Allocation Of Contributors To Public Projects, Jared Soundy, Chenhao Wang, Clay Stevens, Hau Chan

School of Computing: Conference and Workshop Papers

Public projects can succeed or fail for many reasons such as the feasibility of the original goal and coordination among contributors. One major reason for failure is that insufficient work leaves the project partially completed. For certain types of projects anything short of full completion is a failure (e.g., feature request on software projects in GitHub). Therefore, project success relies heavily on individuals allocating sufficient effort. When there are multiple public projects, each contributor needs to make decisions to best allocate his/her limited effort (e.g., time) to projects while considering the effort allocation decisions of other strategic contributors and his/her …

Distributed Cross-Community Collaboration For The Cloud-Based Energy Management Service, Yu-Wen Chen, J. Morris Chang

Publications and Research

Customers’ participation is a critical factor for inte-grating the distributed energy resources via demand response and demand-side management programs, especially when customers become prosumers. Incentives need to be delivered by the energy management service to attract prosumers to operate their distributed energy resources and electricity loads grid-friendly actively. The cloud-based energy management service enables virtual trading for customers within the same community to minimize cost and smooth the fluctuation. With the potential fast-growing number of service providers and customers, the needs exist for efficiently collaborating across multiple service providers and customers. This paper proposes the distributed cross-community collaboration (XCC) for …

Ensemble Protein Inference Evaluation, Kyle Lee Lucke

Graduate Student Theses, Dissertations, & Professional Papers

The Protein inference problem is becoming an increasingly important tool that aids in the characterization of complex proteomes and analysis of complex protein samples. In bottom-up shotgun proteomics experiments the metrics for evaluation (like AUC and calibration error) are based on an often imperfect target-decoy database. These metrics make the inherent assumption that all of the proteins in the target set are present in the sample being analyzed. In general, this is not the case, they are typically a mix of present and absent proteins. To objectively evaluate inference methods, protein standard datasets are used. These datasets are special in …

Interactive Visual Self-Service Data Classification Approach To Democratize Machine Learning, Sridevi Narayana Wagle

All Master's Theses

Machine learning algorithms often produce models considered as complex black-box models by both end users and developers. Such algorithms fail to explain the model in terms of the domain they are designed for. The proposed Iterative Visual Logical Classifier (IVLC) is an interpretable machine learning algorithm that allows end users to design a model and classify data with more confidence and without having to compromise on the accuracy. Such technique is especially helpful when dealing with sensitive and crucial data like cancer data in the medical domain with high cost of errors. With the help of the proposed interactive and …

Single And Differential Morph Attack Detection, Baaria Chaudhary

Graduate Theses, Dissertations, and Problem Reports (ETD)

Face recognition systems operate on the assumption that a person's face serves as the unique link to their identity. In this thesis, we explore the problem of morph attacks, which have become a viable threat to face verification scenarios precisely because of their inherent ability to break this unique link. A morph attack occurs when two people who share similar facial features morph their faces together such that the resulting face image is recognized as either of two contributing individuals. Morphs inherit enough visual features from both individuals that both humans and automatic algorithms confuse them. The contributions of this …

Cat Tracks – Tracking Wildlife Through Crowdsourcing Using Firebase, Tracy Ho

Master's Projects

Many mountain lions are killed in the state of California every year from roadkill. To reduce these numbers, it is important that a system be built to track where these mountain lions have been around. One such system could be built using the platform-as-a-service, Firebase. Firebase is a platform service that collects and manages data that comes in through a mobile application. For the development of cross-platform mobile applications, Flutter is used as a toolkit for developers for both iOS and Android. This entire system, Cat Tracks is proposed as a crowdsource platform to track wildlife, with the current focus …

Use Of Image Processing Algorithms For Mine Originating Waste Grain Size Determination, Sebastian Iwaszenko

Journal of Sustainable Mining

The utilization of mineral wastes from the mining industry is one of most challenging phases in the raw materials life cycle. In many countries, there are piles of mineral waste materials that date back to the previous century. There is also a constant stream of accompanying mineral matter excavated during everyday mine operation. This stream of waste matter is particularly notable for deep coal mining. Grain size composition of waste mineral matter is one of most important characteristics of coal originating waste material. This paper presents the use of image analysis for the determination of grain size composition of mineral …

Findfur: A Tool For Predicting Furin Cleavage Sites Of Viral Envelope Substrates, Christine Gu

Master's Projects

Most biologically active proteins of eukaryotic cells are initially synthesized in the secretory pathway as inactive precursors and require proteolytic processing to become functionally active. This process is performed by a specialized family of endogenous enzymes known as proproteases convertases (PCs). Within this family of proteases, the most notorious and well-research is furin. Found ubiquitously throughout the human body, typical furin substrates are cleaved at sites composed of paired basic amino acids, specifically at the consensus sequence, R-X-[K/R]-R↓. Furin is often exploited by many pathogens, such as enveloped viruses, for proteolytic processing and maturation of their proteins. Glycoproteins of enveloped …

The Use Of Evidential Reasoning Model With Biomarkers In Pancreatic Cancer Prediction, Qianhui Fan

Master's Projects

In this project, an evidential reasoning model is built to amalgamate factors that could be used in early detection of pancreatic cancer. Our machine learning model outputs a probability of a given patient having prostate cancer based on various input variables. These variables include health history factors, such as smoking and medical history, technical artifacts, such as biopsy sequencing technology, and genomic biomarkers such as mutational, transcriptional and methylomic profiles, cfDNA, and copy number variation. The dataset used in this project is a part of The Cancer Genome Atlas (TCGA) project and was collected from the National Cancer Institute (NIH) …

Visualization Of Large Networks Using Recursive Community Detection, Xinyuan Fan

Master's Projects

Networks show relationships between people or things. For instance, a person has a social network of friends, and websites are connected through a network of hyperlinks. Networks are most commonly represented as graphs, so graph drawing becomes significant for network visualization. An effective graph drawing can quickly reveal connections and patterns within a network that would be difficult to discern without visual aid. But graph drawing becomes a challenge for large networks. Am- biguous edge crossings are inevitable in large networks with numerous nodes and edges, and large graphs often become a complicated tangle of lines. These issues greatly reduce …

Methodological Aspects Of Distance Learning For Developing The Professional Competence Of Students Of The Direction "Computer Engineering, B Kuznetsova, Gulnora Muxtarova, Umida Azimova, Kim Yelena

Bulletin of TUIT: Management and Communication Technologies

This work is based on the use of distance learning technologies in education, which will make it possible to individualize training, and in turn contributes to the formation of professionally important qualities for students of the direction of "Computer Engineering". The experimental work was aimed at developing a technology for the formation of students' professional competence.

The article shows that the mastery by students of knowledge, skills and abilities in the field of computer engineering was aimed at their conscious application in solving problems of the educational and cognitive process, and subsequently in professional activity.

The article presents the results …

Exploring Information For Quantum Machine Learning Models, Michael Telahun

Electronic Theses and Dissertations

Quantum computing performs calculations by using physical phenomena and quantum mechanics principles to solve problems. This form of computation theoretically has been shown to provide speed ups to some problems of modern-day processing. With much anticipation the utilization of quantum phenomena in the field of Machine Learning has become apparent. The work here develops models from two software frameworks: TensorFlow Quantum (TFQ) and PennyLane for machine learning purposes. Both developed models utilize an information encoding technique amplitude encoding for preparation of states in a quantum learning model. This thesis explores both the capacity for amplitude encoding to provide enriched state …

Unsupervised Structural Graph Node Representation Learning, Mikel Joaristi

Boise State University Theses and Dissertations

Unsupervised Graph Representation Learning methods learn a numerical representation of the nodes in a graph. The generated representations encode meaningful information about the nodes' properties, making them a powerful tool for tasks in many areas of study, such as social sciences, biology or communication networks. These methods are particularly interesting because they facilitate the direct use of standard Machine Learning models on graphs. Graph representation learning methods can be divided into two main categories depending on the information they encode, methods preserving the nodes connectivity information, and methods preserving nodes' structural information. Connectivity-based methods focus on encoding relationships between nodes, …

Creating Optimal Conditions For Reproducible Data Analysis In R With ‘Fertile’, Audrey M. Bertin, Benjamin Baumer

Statistical and Data Sciences: Faculty Publications

The advancement of scientific knowledge increasingly depends on ensuring that data-driven research is reproducible: that two people with the same data obtain the same results. However, while the necessity of reproducibility is clear, there are significant behavioral and technical challenges that impede its widespread implementation and no clear consensus on standards of what constitutes reproducibility in published research. We present fertile, an R package that focuses on a series of common mistakes programmers make while conducting data science projects in R, primarily through the RStudio integrated development environment. fertile operates in two modes: proactively, to prevent reproducibility mistakes from happening …

Evaluation Of Reliability Indicators Of Mobile Communication System Bases, Dilmurod Davronbekov, Utkir Karimovich Matyokubov, Malika Ilkhamovna Abdullayeva

Bulletin of TUIT: Management and Communication Technologies

In this study, the reliability of mobile system base stations (BTS) is assessed by analyzing data obtained on faults in about 200 BTS over a six-month period. Five BTSs with the highest number of failures and duration of failure were selected in these BTSs. Based on the data obtained, reliability parameters were calculated and compared.

The study used Weibull’s dismissal process distribution method. The breakdown times of each BTS were sorted. In all five BTS, it was found that β(where the value of β is the approximate value obtained from the values of the smallest squares of the Weibull graph), …

A Study Of Sentiment Of Covid-19 Related Tweets In The Usa, Jack Luu, Rosangela Follmann

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Coevolution, Dynamics And Allostery Conspire In Shaping Cooperative Binding And Signal Transmission Of The Sars-Cov-2 Spike Protein With Human Angiotensin-Converting Enzyme 2, Gennady M. Verkhivker

Mathematics, Physics, and Computer Science Faculty Articles and Research

Binding to the host receptor is a critical initial step for the coronavirus SARS-CoV-2 spike protein to enter into target cells and trigger virus transmission. A detailed dynamic and energetic view of the binding mechanisms underlying virus entry is not fully understood and the consensus around the molecular origins behind binding preferences of SARS-CoV-2 for binding with the angiotensin-converting enzyme 2 (ACE2) host receptor is yet to be established. In this work, we performed a comprehensive computational investigation in which sequence analysis and modeling of coevolutionary networks are combined with atomistic molecular simulations and comparative binding free energy analysis of …

Analyzing Yankees And Red Sox Sentiment Over The Course Of A Season, Connor Koch

Honors Projects in Data Science

This paper investigates data collected on twitter which references the Yankees or Red Sox during the 2020 Major League Baseball (MLB) season. The objective is to analyze the sentiment of tweets referencing the Yankees and Red Sox over the course of the season. In addition, an investigation of the networks within the data and the topics that were prevalent will be conducted. The 2020 MLB season was started late because of the COVID-19 pandemic and was a season like no other. The expectation of a dataset revolving around baseball is that the topics discussed would be about baseball. The findings …

Divide And Slide: Layer-Wise Refinement For Output Range Analysis Of Deep Neural Networks, Chao Huang, Jiameng Fan, Xin Chen, Wenchao Li, Qi Zhu

Computer Science Faculty Publications

In this article, we present a layer-wise refinement method for neural network output range analysis. While approaches such as nonlinear programming (NLP) can directly model the high nonlinearity brought by neural networks in output range analysis, they are known to be difficult to solve in general. We propose to use a convex polygonal relaxation (overapproximation) of the activation functions to cope with the nonlinearity. This allows us to encode the relaxed problem into a mixed-integer linear program (MILP), and control the tightness of the relaxation by adjusting the number of segments in the polygon. Starting with a segment number of …

Espade: An Efficient And Semantically Secure Shortest Path Discovery For Outsourced Location-Based Services, Bharath K. Samanthula, Divyadharshini Karthikeyan, Boxiang Dong, K. Anitha Kumari

Department of Computer Science Faculty Scholarship and Creative Works

With the rapid growth of smart devices and technological advancements in tracking geospatial data, the demand for Location-Based Services (LBS) is facing a constant rise in several domains, including military, healthcare and transportation. It is a natural step to migrate LBS to a cloud environment to achieve on-demand scalability and increased resiliency. Nonetheless, outsourcing sensitive location data to a third-party cloud provider raises a host of privacy concerns as the data owners have reduced visibility and control over the outsourced data. In this paper, we consider outsourced LBS where users want to retrieve map directions without disclosing their location information. …

Anatomy Of The Edelman: Measuring The World’S Best Analytics Projects, Michael F. Gorman, Lakshminarayana Nittala, Jeffrey M. Aldenb

MIS/OM/DS Faculty Publications

Each year, the INFORMS Edelman Award celebrates the best and most impactful implementations of operations research, management science, and analytics. As the Edelman Award approaches its 50-year mark, we provide a history and characterization of the award’s finalists and winners. We provide some basic descriptive analytics about the participating organizations and authors, the impact of their work, and the methods they employed. We also conduct predictive analytics on finalist submissions, gauging contributors to success in establishing winning entries. We find that predicting Edelman winners a priori is extremely difficult; however, given a set of finalists, predictive models based on monetary …

Forecasting Vegetation Health In The Mena Region By Predicting Vegetation Indicators With Machine Learning Models, Sachi Perera, Wenzhao Li, Erik Linstead, Hesham El-Askary

Mathematics, Physics, and Computer Science Faculty Articles and Research

Machine learning (ML) techniques can be applied to predict and monitor drought conditions due to climate change. Predicting future vegetation health indicators (such as EVI, NDVI, and LAI) is one approach to forecast drought events for hotspots (e.g. Middle East and North Africa (MENA) regions). Recently, ML models were implemented to predict EVI values using parameters such as land types, time series, historical vegetation indices, land surface temperature, soil moisture, evapotranspiration etc. In this work, we collected the MODIS atmospherically corrected surface spectral reflectance imagery with multiple vegetation related indices for modeling and evaluation of drought conditions in the MENA …

Teaching Computational Machine Learning (Without Statistics), Katherine M. Kinnaird

Statistical and Data Sciences: Faculty Publications

This paper presents an undergraduate machine learning course that emphasizes algorithmic understanding and programming skills while assuming no statistical training. Emphasizing the development of good habits of mind, this course trains students to be independent machine learning practitioners through an iterative, cyclical framework for teaching concepts while adding increasing depth and nuance. Beginning with unsupervised learning, this course is sequenced as a series of machine learning ideas and concepts with specific algorithms acting as concrete examples. This paper also details course organization including evaluation practices and logistics.

Functional Morphology Of Gliding Flight Ii. Morphology Follows Predictions Of Gliding Performance, Jonathan Rader, Tyson L. Hedrick, Yanyan He, Lindsay D. Waldrop

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The evolution of wing morphology among birds, and its functional consequences, remains an open question, despite much attention. This is in part because the connection between form and function is difficult to test directly. To address this deficit, in prior work we used computational modeling and sensitivity analysis to interrogate the impact of altering wing aspect ratio, camber, and Reynolds number on aerodynamic performance, revealing the performance landscapes that avian evolution has explored. In the present work, we used a dataset of three-dimensionally scanned bird wings coupled with the performance landscapes to test two hypotheses regarding the evolutionary diversification of …

Development Of An Augmented Reality Based Facility Layout Planning And Optimization, Tan Chee Hau

Student Works (2020-2029)

This study presents an augmented reality (AR) based facility layout planning (FLP) system with an optimization algorithm to assist facility layout designers in decision making. AR is a technology that blends virtual data such as 3 Dimensional (3D) model into the actual world. FLP is about the allocation of facilities to achieve smooth, efficient and effective processes. FLP’s research can be divided into the procedural approach, algorithmic approach, Virtual Reality (VR) and AR-based approaches. AR-based FLP effectively addressed the traditional FLP issues such as facilitating the addition of a new machine in an existing production floor, rearrangement of machines’ sequence, …

Exploring The Eating Disorder Examination Questionnaire, Clinical Impairment Assessment, And Autism Quotient To Identify Eating Disorder Vulnerability: A Cluster Analysis, Natalia Stewart Rosenfield, Erik Linstead

Engineering Faculty Articles and Research

Eating disorders are very complicated and many factors play a role in their manifestation. Furthermore, due to the variability in diagnosis and symptoms, treatment for an eating disorder is unique to the individual. As a result, there are numerous assessment tools available, which range from brief survey questionnaires to in-depth interviews conducted by a professional. One of the many benefits to using machine learning is that it offers new insight into datasets that researchers may not previously have, particularly when compared to traditional statistical methods. The aim of this paper was to employ k-means clustering to explore the Eating Disorder …