Computer Sciences Commons^™

Drawing Diagrams With R, Paul Murrell

The R Journal

R provides a number of well-known high-level facilities for producing sophisticated statistical plots, including the “traditional” plots in the graphics pack age (R Development Core Team, 2008), the Trellis style plots provided by lattice (Sarkar, 2008), and the grammar-of-graphics-inspired approach of ggplot2 (Wickham, 2009). However, R also provides a powerful set of low level graphics facilities for drawing basic shapes and, more importantly, for arranging those shapes relative to each other, which can be used to draw a wide variety of graphical images. This article highlights some of R’s low-level graphics facilities by demonstrating their use in the production of …

Pmml: An Open Standard For Sharing Models, Alex Guazzelli, Michael Zeller, Wen-Ching Lin, Graham Williams

The R Journal

The PMML package exports a variety of predictive and descriptive models from R to the Predictive Model Markup Language (Data Mining Group, 2008). PMML is an XML-based language and has become the de-facto standard to represent not only predictive and descriptive models, but also data pre- and post-processing. In so doing, it allows for the interchange of models among different tools and environments, mostly avoiding proprietary issues and incompatibilities.

The PMML package itself (Williams et al., 2009) was conceived at first as part of Togaware’s data mining toolkit Rattle, the R Analytical Tool To Learn Easily (Williams, 2009). Although it …

Residual-Based Estimation Of Peer And Link Lifetimes In P2p Networks, Xiaoming Wang, Zhongmei Yao, Dmitri Loguinov

Computer Science Faculty Publications

Existing methods of measuring lifetimes in P2P systems usually rely on the so-called Create-BasedMethod (CBM), which divides a given observation window into two halves and samples users ldquocreatedrdquo in the first half every Delta time units until they die or the observation period ends. Despite its frequent use, this approach has no rigorous accuracy or overhead analysis in the literature. To shed more light on its performance, we first derive a model for CBM and show that small window size or large Delta may lead to highly inaccurate lifetime distributions. We then show that create-based sampling exhibits an inherent …

Understanding Sources And Consequences Of Variation In Self-Assembly, Arjun Dasgupta

Computer Science and Computer Engineering Undergraduate Honors Theses

Self-assembly is the process of constructing a larger structure from small component parts that randomly collide and bond through weak interactions [2]. It is a potentially important method in the field of nanoscale manufacturing. However, because of the nature of self-assembly, randomness and the design of self-assembly compete with each other, and unforeseen things can be produced. In this thesis, the tiling assembly model of Winfree [7] was simulated. The tiling assembly model has two bonds which assemble planar nanostructures. The goal of the simulations was to determine what probabilities would produce an average degree of four (the ideal) for …

Implementation Of A Cartesian Grid Incompressible Navier-Stokes Solver On Multi-Gpu Desktop Platforms Using Cuda, Julien C. Thibault

Boise State University Theses and Dissertations

Today’s Graphics Processor Units (GPU) are powerful computation platforms used not only for graphic rendering but also for multi-purpose computation. Now reaching a teraflops of peak performance and over a 100 GB/sec of bandwidth, GPUs outperform the latest CPUs and provide a new high-performance computing platform. New languages such as CUDA and Brook+ allow developers to target the programmable unit of the GPUs without a graphics programming background. Scientists and engineers in various fields have started benefiting from the last generations of GPUs. In this thesis, the implementation of a Navier-Stokes solver for incompressible flow around urban-like domains is presented. …

On Mining Rating Dependencies In Online Collaborative Rating Networks, Hady W. Lauw, Ee Peng Lim, Ke Wang

Research Collection School Of Computing and Information Systems

The trend of social information processing sees e-commerce and social web applications increasingly relying on user-generated content, such as rating, to determine the quality of objects and to generate recommendations for users. In a rating system, a set of reviewers assign to a set of objects different types of scores based on specific evaluation criteria. In this paper, we seek to determine, for each reviewer and for each object, the dependency between scores on any two given criteria. A reviewer is said to have high dependency between a pair of criteria when his or her rating scores on objects based …

Predicting Outcome For Collaborative Featured Article Nomination In Wikipedia, Meiqun Hu, Ee Peng Lim, Ramayya Krishnan

Research Collection School Of Computing and Information Systems

In Wikipedia, good articles are wanted. While Wikipedia relies on collaborative effort from online volunteers for quality checking, the process of selecting top quality articles is time consuming. At present, the duty of decision making is shouldered by only a couple of administrators. Aiming to assist in the quality checking cycles so as to cope with the exponential growth of online contributions to Wikipedia, this work studies the task of predicting the outcome of featured article (FA) nominations. We analyze FA candidate (FAC) sessions collected over a period of 3.5 years, and examine the extent to which consensus has been …

A Novel Framework For Efficient Automated Singer Identification In Large Music Databases, Jialie Shen, John Shepherd, Bin Cui, Kian-Lee Tan

Research Collection School Of Computing and Information Systems

Over the past decade, there has been explosive growth in the availability of multimedia data, particularly image, video, and music. Because of this, content-based music retrieval has attracted attention from the multimedia database and information retrieval communities. Content-based music retrieval requires us to be able to automatically identify particular characteristics of music data. One such characteristic, useful in a range of applications, is the identification of the singer in a musical piece. Unfortunately, existing approaches to this problem suffer from either low accuracy or poor scalability. In this article, we propose a novel scheme, called Hybrid Singer Identifier (HSI), for …

Opaque: Protecting Path Privacy In Directions Search, Ken C. K. Lee, Wang-Chien Lee, Hong Va Leong, Baihua Zheng

Research Collection School Of Computing and Information Systems

Directions search returns the shortest path from a source to a destination on a road network. However, the search interests of users may be exposed to the service providers, thus raising privacy concerns. For instance, a path query that finds a path from a resident address to a clinic may lead to a deduction about "who is related to what disease". To protect user privacy from accessing directions search services, we introduce the OPAQUE system, which consists of two major components: (1) an obfuscator that formulates obfuscated path queries by mixing true and fake sources/destinations; and (2) an obfuscated path …

An Incremental Threshold Method For Continuous Text Search Queries, Kyriakos Mouratidis, Hwee Hwa Pang

Research Collection School Of Computing and Information Systems

A text filtering system monitors a stream of incoming documents, to identify those that match the interest profiles of its users. The user interests are registered at a server as continuous text search queries. The server constantly maintains for each query a ranked result list, comprising the recent documents (drawn from a sliding window) with the highest similarity to the query. Such a system underlies many text monitoring applications that need to cope with heavy document traffic, such as news and email monitoring. In this paper, we propose the first solution for processing continuous text queries efficiently. Our objective is …

Describing Fuzzy Sets Using A New Concept: Fuzzify Functor, Kexin Wei, Zhaoxia Wang, Quan Wang

Research Collection School Of Computing and Information Systems

This paper proposed a fuzzify functor as an extension of the concept of fuzzy sets. The fuzzify functor and the first-order operated fuzzy set are defined. From the theory analysis, it can be observed that when the fuzzify functor acts on a simple crisp set, we get the first order fuzzy set or type-1 fuzzy set. By operating the fuzzify functor on fuzzy sets, we get the higher order fuzzy sets or higher type fuzzy sets and their membership functions. Using the fuzzify functor we can exactly describe the type-1 fuzzy sets, type-2 fuzzy sets and higher type or higher …

Fast Object Search On Road Networks, Ken C. K. Lee, Wang-Chien Lee, Baihua Zheng

Research Collection School Of Computing and Information Systems

In this paper, we present ROAD, a general framework to evaluate Location-Dependent Spatial Queries (LDSQ)s that searches for spatial objects on road networks. By exploiting search space pruning technique and providing a dynamic object mapping mechanism, ROAD is very efficient and flexible for various types of queries, namely, range search and nearest neighbor search, on objects over large-scale networks. ROAD is named after its two components, namely, Route Overlay and Association Directory, designed to address the network traversal and object access aspects of the framework. In ROAD, a large road network is organized as a hierarchy of interconnected regional sub-networks …

Continuous Visible Nearest Neighbour Queries, Yunjun Gao, Baihua Zheng, Wang-Chien Lee, Gencai Chen

Research Collection School Of Computing and Information Systems

In this paper, we identify and solve a new type of spatial queries, called continuous visible nearest neighbor (CVNN) search. Given a data set P, an obstacle set O, and a query line segment q, a CVNN query returns a set of (p, R) tuples such that p ? P is the nearest neighbor (NN) to every point r along the interval R ? q as well as p is visible to r. Note that p may be NULL, meaning that all points in P are invisible to all points in R, due to the obstruction of some obstacles in …

Node Isolation Model And Age-Based Neighbor Selection In Unstructured P2p Networks, Zhongmei Yao, Derek Leonard, Dmitri Loguinov

Computer Science Faculty Publications

Previous analytical studies of unstructured P2P resilience have assumed exponential user lifetimes and only considered age-independent neighbor replacement. In this paper, we overcome these limitations by introducing a general node-isolation model for heavy-tailed user lifetimes and arbitrary neighbor-selection algorithms. Using this model, we analyze two age-biased neighbor-selection strategies and show that they significantly improve the residual lifetimes of chosen users, which dramatically reduces the probability of user isolation and graph partitioning compared with uniform selection of neighbors. In fact, the second strategy based on random walks on age-proportional graphs demonstrates that, for lifetimes with infinite variance, the system monotonically increases …

Stochastic Modeling Western Paintings For Effective Classification, Jialie Shen

Research Collection School Of Computing and Information Systems

As one of the most important cultural heritages, classical western paintings have always played a special role in human live and been applied for many different purposes. While image classification is the subject of a plethora of related publications, relatively little attention has been paid to automatic categorization of western classical paintings which could be a key technique of modern digital library, museums and art galleries. This paper studies automatic classification on large western painting image collection. We propose a novel framework to support automatic classification on large western painting image collections. With this framework, multiple visual features can be …

User Interface Design, Moritz Stefaner, Sebastien Ferre, Saverio Perugini, Jonathan Koren, Yi Zhang

Computer Science Faculty Publications

As detailed in Chap. 1, system implementations for dynamic taxonomies and faceted search allow a wide range of query possibilities on the data. Only when these are made accessible by appropriate user interfaces, the resulting applications can support a variety of search, browsing and analysis tasks. User interface design in this area is confronted with specific challenges. This chapter presents an overview of both established and novel principles and solutions.

Special Set Linear Algebra And Special Set Fuzzy Linear Algebra, Florentin Smarandache, W.B. Vasantha Kandasamy, K. Ilanthenral

Branch Mathematics and Statistics Faculty and Staff Publications

This book for the first time introduces the notion of special set linear algebra and special set fuzzy linear algebra. This is an extension of the book set linear algebra and set fuzzy linear algebra. These algebraic structures basically exploit only the set theoretic property, hence in applications one can include a finite number of elements without affecting the systems property. These new structures are not only the most generalized structures but they can perform multi task simultaneously; hence they would be of immense use to computer scientists. This book has five chapters. In chapter one the basic concepts about …

Web Social Mining, Hady W. Lauw, Ee Peng Lim

Research Collection School Of Computing and Information Systems

No abstract provided.

Efficient Valid Scope Computation For Location-Dependent Spatial Queries In Mobile And Wireless Environments, Ken C. K. Lee, Wang-Chien Lee, Hong Va Leong, Brandon Unger, Baihua Zheng

Research Collection School Of Computing and Information Systems

In mobile and wireless environments, mobile clients can access information with respect to their locations by submitting Location-Dependent Spatial Queries (LDSQs) to Location-Based Service (LBS) servers. Owing to scarce wireless channel bandwidth and limited client battery life, frequent LDSQ submission from clients must be avoided. Observing that LDSQs issued from similar client positions would normally return the same results, we explore the idea of valid scope, that represents a spatial area in which a set of LDSQs will retrieve exactly the same query results. With a valid scope derived and an LDSQ result cached at the client side, a client …

Investigating Data Mining Techniques For Extracting Information From Alzheimer's Disease Data, Vinh Quoc Dang

Theses : Honours

Data mining techniques have been used widely in many areas such as business, science, engineering and more recently in clinical medicine. These techniques allow an enormous amount of high dimensional data to be analysed for extraction of interesting information as well as the construction of models for prediction. One of the foci in health related research is Alzheimer's disease which is currently a non-curable disease where diagnosis can only be confirmed after death via an autopsy. Using multi-dimensional data and the applications of data mining techniques, researchers hope to find biomarkers that will diagnose Alzheimer's disease as early as possible. …

Computing Medoids In Large Spatial Datasets, Kyriakos Mouratidis, Dimitris Papadias, Spiros Papadimitriou

Research Collection School Of Computing and Information Systems

In this chapter, we consider a class of queries that arise in spatial decision making and resource allocation applications. Assume that a company wants to open a number of warehouses in a city. Let P be the set of residential blocks in the city. P represents customer locations to be potentially served by the company. At the same time, P also comprises the candidate warehouse locations because the warehouses themselves must be opened in some residential blocks.

Quality-Aware Collaborative Question Answering: Methods And Evaluation, Maggy Anastasia Suryanto, Ee Peng Lim, Aixin Sun, Roger Hsiang-Li Chiang

Research Collection School Of Computing and Information Systems

Community Question Answering (QA) portals contain questions and answers contributed by hundreds of millions of users. These databases of questions and answers are of great value if they can be used directly to answer questions from any user. In this research, we address this collaborative QA task by drawing knowledge from the crowds in community QA portals such as Yahoo! Answers. Despite their popularity, it is well known that answers in community QA portals have unequal quality. We therefore propose a quality-aware framework to design methods that select answers from a community QA portal considering answer quality in addition to …

Localized Monitoring Of Knn Queries In Wireless Sensor Networks, Yuxia Yao, Xueyan Tang, Ee Peng Lim

Research Collection School Of Computing and Information Systems

Wireless sensor networks have been widely used in civilian and military applications. Primarily designed for monitoring purposes, many sensor applications require continuous collection and processing of sensed data. Due to the limited power supply for sensor nodes, energy efficiency is a major performance concern in query processing. In this paper, we focus on continuous kNN query processing in object tracking sensor networks. We propose a localized scheme to monitor nearest neighbors to a query point. The key idea is to establish a monitoring area for each query so that only the updates relevant to the query are collected. The monitoring …

Partially Materialized Digest Scheme: An Efficient Verification Method For Outsourced Databases, Kyriakos Mouratidis, Dimitris Sacharidis, Hwee Hwa Pang

Research Collection School Of Computing and Information Systems

In the outsourced database model, a data owner publishes her database through a third-party server; i.e., the server hosts the data and answers user queries on behalf of the owner. Since the server may not be trusted, or may be compromised, users need a means to verify that answers received are both authentic and complete, i.e., that the returned data have not been tampered with, and that no qualifying results have been omitted. We propose a result verification approach for one-dimensional queries, called Partially Materialized Digest scheme (PMD), that applies to both static and dynamic databases. PMD uses separate indexes …

Tuning On-Air Signatures For Balancing Performance And Confidentiality, Baihua Zheng, Wang-Chien Lee, Peng Liu, Dik Lun Lee, Xuhua Ding

Research Collection School Of Computing and Information Systems

In this paper, we investigate the trade off between performance and confidentiality in signature-based air indexing schemes for wireless data broadcast. Two metrics, namely, false drop probability and false guess probability, are defined to quantify the filtering efficiency and confidentiality loss of a signature scheme. Our analysis reveals that false drop probability and false guess probability share a similar trend as the tuning parameters of a signature scheme change and it is impossible to achieve a low false drop probability and a high false guess probability simultaneously. In order to balance the performance and confidentiality, we perform an analysis to …

Quc-Tree: Integrating Query Context Information For Efficient Music Retrieval, Jialie Shen, Dacheng Tao, Xuelong Li

Research Collection School Of Computing and Information Systems

In this paper, we introduce a novel indexing scheme-query context tree (QUC-tree) to facilitate efficient query sensitive music search under different query contexts. Distinguished from the previous approaches, QUC-tree is a balanced multiway tree structure, where each level represents the data space at different dimensionality. Before the tree structure construction, principle component analysis (PCA) is applied for data analysis and transforming the raw composite features into a new feature space sorted by the importance of acoustic features. The PCA transformed data and reduced dimensions in the upper levels can alleviate suffering from dimensionality curse. To accurately mimic human perception, an …

Dynamic Web Service Selection For Reliable Web Service Composition, San-Yih Hwang, Ee Peng Lim, Chien-Hsiang Lee, Cheng-Hung Chen

Research Collection School Of Computing and Information Systems

This paper studies the dynamic web service selection problem in a failure-prone environment, which aims to determine a subset of Web services to be invoked at run-time so as to successfully orchestrate a composite web service. We observe that both the composite and constituent web services often constrain the sequences of invoking their operations and therefore propose to use finite state machine to model the permitted invocation sequences of Web service operations. We assign each state of execution an aggregated reliability to measure the probability that the given state will lead to successful execution in the context where each web …

Text Mining In Radiology Reports, Tianxia Gong, Chew Lim Tan, Tze-Yun Leong, Cheng Kiang Lee, Boon Chuan Pang, C. C. Tchoyoson Lim, Qi Tian, Suisheng Tang, Zhuo Zhang

Research Collection School Of Computing and Information Systems

Medical text mining has gained increasing interest in recent years. Radiology reports contain rich information describing radiologist's observations on the patient's medical conditions in the associated medical images. However as most reports are in free text format, the valuable information contained in those reports cannot be easily accessed and used, unless proper text mining has been applied. In this paper we propose a text mining system to extract and use the information in radiology reports. The system consists of three main modules: a medical finding extractor a report and image retriever and a text-assisted image feature extractor In evaluation, the …

Explaining Inferences In Bayesian Networks, Ghim-Eng Yap, Ah-Hwee Tan, Hwee Hwa Pang

Research Collection School Of Computing and Information Systems

While Bayesian network (BN) can achieve accurate predictions even with erroneous or incomplete evidence, explaining the inferences remains a challenge. Existing approaches fall short because they do not exploit variable interactions and cannot account for compensations during inferences. This paper proposes the Explaining BN Inferences (EBI) procedure for explaining how variables interact to reach conclusions. EBI explains the value of a target node in terms of the influential nodes in the target's Markov blanket under specific contexts, where the Markov nodes include the target's parents, children, and the children's other parents. Working back from the target node, EBI shows the …

A Fast Pruned‐Extreme Learning Machine For Classification Problem, Hai-Jun Rong, Yew-Soon Ong, Ah-Hwee Tan, Zexuan Zhu

Research Collection School Of Computing and Information Systems

Extreme learning machine (ELM) represents one of the recent successful approaches in machine learning, particularly for performing pattern classification. One key strength of ELM is the significantly low computational time required for training new classifiers since the weights of the hidden and output nodes are randomly chosen and analytically determined, respectively. In this paper, we address the architectural design of the ELM classifier network, since too few/many hidden nodes employed would lead to underfitting/overfitting issues in pattern classification. In particular, we describe the proposed pruned-ELM (P-ELM) algorithm as a systematic and automated approach for designing ELM classifier network. P-ELM uses …