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Full-Text Articles in Computer Sciences

Equivalence Of Classical And Quantum Codes, Tefjol Pllaha Jan 2019

Equivalence Of Classical And Quantum Codes, Tefjol Pllaha

Theses and Dissertations--Mathematics

In classical and quantum information theory there are different types of error-correcting codes being used. We study the equivalence of codes via a classification of their isometries. The isometries of various codes over Frobenius alphabets endowed with various weights typically have a rich and predictable structure. On the other hand, when the alphabet is not Frobenius the isometry group behaves unpredictably. We use character theory to develop a duality theory of partitions over Frobenius bimodules, which is then used to study the equivalence of codes. We also consider instances of codes over non-Frobenius alphabets and establish their isometry groups. Secondly, …


Ε-Superposition And Truncation Dimensions In Average And Probabilistic Settings For ∞-Variate Linear Problems, Jonathan M. Dingess Jan 2019

Ε-Superposition And Truncation Dimensions In Average And Probabilistic Settings For ∞-Variate Linear Problems, Jonathan M. Dingess

Theses and Dissertations--Computer Science

This thesis is a representation of my contribution to the paper of the same name I co-author with Dr. Wasilkowski. It deals with linear problems defined on γ-weighted normed spaces of functions with infinitely many variables. In particular, I describe methods and discuss results for ε-truncation and ε-superposition methods. I show through these results that the ε-truncation and ε-superposition dimensions are small under modest error demand ε. These positive results are derived for product weights and the so-called anchored decomposition.


Revisiting The Isoperimetric Graph Partitioning Problem, Sravan Danda, Aditya Challa, B. S. Daya Sagar, Laurent Najman Jan 2019

Revisiting The Isoperimetric Graph Partitioning Problem, Sravan Danda, Aditya Challa, B. S. Daya Sagar, Laurent Najman

Journal Articles

Isoperimetric graph partitioning, which is also known as the Cheeger cut, is NP-hard in its original form. In the literature, multiple modifications to this problem have been proposed to obtain approximation algorithms for clustering applications. In the context of image segmentation, a heuristic continuous relaxation to this problem introduced by Leo Grady and Eric L. Schwartz has yielded good quality results. This algorithm is based on solving a linear system of equations involving the Laplacian of the image graph. Furthermore, the same algorithm applied to a maximum spanning tree (MST) of the image graph was shown to produce similar results …


Characterizations Of Certain Recently Introduced Discrete Distributions, Gholamhossein G. Hamedani Jan 2019

Characterizations Of Certain Recently Introduced Discrete Distributions, Gholamhossein G. Hamedani

Mathematics, Statistics and Computer Science Faculty Research and Publications

Characterizations of certain recently introduced discrete distributions are presented to complete, in some way, the works cited in the References.


Sparsity Promoting Regularization For Effective Noise Suppression In Spect Image Reconstruction, Wei Zheng, Si Li, Andrzej Krol, C. Ross Schmidtlein, Xueying Zeng, Yuesheng Xu Jan 2019

Sparsity Promoting Regularization For Effective Noise Suppression In Spect Image Reconstruction, Wei Zheng, Si Li, Andrzej Krol, C. Ross Schmidtlein, Xueying Zeng, Yuesheng Xu

Mathematics & Statistics Faculty Publications

The purpose of this research is to develop an advanced reconstruction method for low-count, hence high-noise, Single-Photon Emission Computed Tomography (SPECT) image reconstruction. It consists of a novel reconstruction model to suppress noise while conducting reconstruction and an efficient algorithm to solve the model. A novel regularizer is introduced as the nonconvex denoising term based on the approximate sparsity of the image under a geometric tight frame transform domain. The deblurring term is based on the negative log-likelihood of the SPECT data model. To solve the resulting nonconvex optimization problem a Preconditioned Fixed-point Proximity Algorithm (PFPA) is introduced. We prove …


On Hybrid Temporal Basis Functions For Stable Numerical Solution Of Time Domain Boundary Integral Equations, Fang Q. Hu Jan 2019

On Hybrid Temporal Basis Functions For Stable Numerical Solution Of Time Domain Boundary Integral Equations, Fang Q. Hu

Mathematics & Statistics Faculty Publications

Problems in unsteady aerodynamics and aeroacoustics can sometimes be formulated as integral equations, such as the boundary integral equations. Numerical discretization of integral equations in the time domain often leads to so-called March-On-in-Time (MOT) schemes. In the literature, the temporal basis functions used in MOT schemes have been largely limited to low-order shifted Lagrange basis functions. In order to evaluate the accuracy and effectiveness of the temporal basis functions, a Fourier analysis of the temporal interpolation schemes is carried out. Based on the Fourier analysis, the spectral resolutions of various temporal basis functions are quantified. It is argued that hybrid …


Aligning Best Practices In Student Success And Career Preparedness: An Exploratory Study To Establish Pathways To Stem Careers For Undergraduate Minority Students, Kimberly D. Kendricks, Anthony A. Arment, K. V. Nedunuri, Cadance A. Lowell Jan 2019

Aligning Best Practices In Student Success And Career Preparedness: An Exploratory Study To Establish Pathways To Stem Careers For Undergraduate Minority Students, Kimberly D. Kendricks, Anthony A. Arment, K. V. Nedunuri, Cadance A. Lowell

Journal of Research in Technical Careers

Undergraduate minority retention and graduation rates in STEM disciplines is a nationally recognized challenge for workforce growth and diversification. The Benjamin Banneker Scholars Program (BBSP) was a five-year undergraduate study developed to increase minority student retention and graduation rates at an HBCU. The program structure utilized a family model as a vehicle to orient students to the demands of college. Program activities integrated best K-12 practices and workforce skillsets to increase academic preparedness and career readiness. Findings revealed that a familial atmosphere improved academic performance, increased undergraduate research, and generated positive perceptions of faculty mentoring. Retention rates among BBSP participants …


Volume 11, Jacob Carney, Ryan White, Joseph Hyman, Jenny Raven, Megan Garrett, Ibrahim Kante, Summer Meinhard, Lauren Johnson, William "Editha" Dean Howells, Laura Gottschalk, Christopher Siefke, Pink Powell, Natasha Woodmancy, Katharine Colley, Abbey Mays, Charlotte Potts Jan 2019

Volume 11, Jacob Carney, Ryan White, Joseph Hyman, Jenny Raven, Megan Garrett, Ibrahim Kante, Summer Meinhard, Lauren Johnson, William "Editha" Dean Howells, Laura Gottschalk, Christopher Siefke, Pink Powell, Natasha Woodmancy, Katharine Colley, Abbey Mays, Charlotte Potts

Incite: The Journal of Undergraduate Scholarship

Table of Contents:

Introduction, Dr. Roger A. Byrne, Dean

From the Editor, Dr. Larissa "Kat" Tracy

From the Designers, Rachel English, Rachel Hanson

Synthesis of 3,5-substituted Parabens and their Antimicrobial Properties, Jacob Coarney, Ryan White

Chernobyl: Putting "Perestroika" and "Glasnot" to the Test, Joseph Hyman

Art by Jenny Raven

Watering Down Accessibility: The Issue with Public Access to Alaska's Federal Waterways, Meagan Garrett

Why Has the Democratic Republic of the Congo outsourced its Responsibility to Educate its Citizens? Ibrahim Kante

Art by Summer Meinhard

A Computational Study of Single Molecule Diodes, Lauren Johnson

Satire of …


Kings In The Direct Product Of Digraphs, Morgan Norge Jan 2019

Kings In The Direct Product Of Digraphs, Morgan Norge

Theses and Dissertations

A k-king in a digraph D is a vertex that can reach every other vertex in D by a directed path of length at most k. A king is a vertex that is a k-king for some k. We will look at kings in the direct product of digraphs and characterize a relationship between kings in the product and kings in the factors. This is a continuation of a project in which a similar characterization is found for the cartesian product of digraphs, the strong product of digraphs, and the lexicographic product of digraphs.


Effective Plant Discrimination Based On The Combination Of Local Binary Pattern Operators And Multiclass Support Vector Machine Methods, Vi N T Le, Beniamin Apopei, Kamal Alameh Jan 2019

Effective Plant Discrimination Based On The Combination Of Local Binary Pattern Operators And Multiclass Support Vector Machine Methods, Vi N T Le, Beniamin Apopei, Kamal Alameh

Research outputs 2014 to 2021

Accurate crop and weed discrimination plays a critical role in addressing the challenges of weed management in agriculture. The use of herbicides is currently the most common approach to weed control. However, herbicide resistant plants have long been recognised as a major concern due to the excessive use of herbicides. Effective weed detection techniques can reduce the cost of weed management and improve crop quality and yield. A computationally efficient and robust plant classification algorithm is developed and applied to the classification of three crops: Brassica napus (canola), Zea mays (maize/corn), and radish. The developed algorithm is based on the …


A Dual State Hierarchical Ensemble Kalman Filter Algorithm, William J. Cook, Jesse Johnson, Marko Maneta, Doug Brinkerhoff Jan 2019

A Dual State Hierarchical Ensemble Kalman Filter Algorithm, William J. Cook, Jesse Johnson, Marko Maneta, Doug Brinkerhoff

Graduate Student Theses, Dissertations, & Professional Papers

Dynamic models that simulate processes across large geographic locations, such as hydrologic models, are often informed by empirical parameters that are distributed across a geographical area and segmented by geological features such as watersheds. These parameters may be referred to as spatially distributed parameters. Spatially distributed parameters are frequently spatially correlated and any techniques utilized in their calibration ideally incorporate existing spatial hierarchical relationships into their structure. In this paper, a parameter estimation method based on the Dual State Ensemble Kalman Filter called the Dual State Hierarchical Ensemble Kalman Filter (DSHEnKF) is presented. This modified filter is innovative in that …


Nonparametric Collective Spectral Density Estimation With An Application To Clustering The Brain Signals, Mehdi Maadooliat, Ying Sun, Tianbo Chen Dec 2018

Nonparametric Collective Spectral Density Estimation With An Application To Clustering The Brain Signals, Mehdi Maadooliat, Ying Sun, Tianbo Chen

Mathematics, Statistics and Computer Science Faculty Research and Publications

In this paper, we develop a method for the simultaneous estimation of spectral density functions (SDFs) for a collection of stationary time series that share some common features. Due to the similarities among the SDFs, the log‐SDF can be represented using a common set of basis functions. The basis shared by the collection of the log‐SDFs is estimated as a low‐dimensional manifold of a large space spanned by a prespecified rich basis. A collective estimation approach pools information and borrows strength across the SDFs to achieve better estimation efficiency. Moreover, each estimated spectral density has a concise representation using the …


Induced Hesitant 2-Tuple Linguistic Aggregation Operators With Application In Group Decision Making, Tabasam Rashid, Ismat Beg, Raja N. Jamil Dec 2018

Induced Hesitant 2-Tuple Linguistic Aggregation Operators With Application In Group Decision Making, Tabasam Rashid, Ismat Beg, Raja N. Jamil

Applications and Applied Mathematics: An International Journal (AAM)

In this article, hesitant 2-tuple linguistic arguments are used to evaluate the group decision making problems which have inter dependent or inter active attributes. Operational laws are developed for hesitant 2-tuple linguistic elements and based on these operational laws hesitant 2- tuple weighted averaging operator and generalized hesitant 2- tuple averaging operator are proposed. Combining Choquet integral with hesitant 2-tuple linguistic information, some new aggregation operators are defined, including the hesitant 2-tuple correlated averaging operator, the hesitant 2-tuple correlated geometric operator and the generalized hesitant 2-tuple correlated averaging operator. These proposed operators successfully manage the correlations among the elements. After …


Calculating The Cohomology Of A Lie Algebra Using Maple And The Serre Hochschild Spectral Sequence, Jacob Kullberg Dec 2018

Calculating The Cohomology Of A Lie Algebra Using Maple And The Serre Hochschild Spectral Sequence, Jacob Kullberg

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

Lie algebra cohomology is an important tool in many branches of mathematics. It is used in the Topology of homogeneous spaces, Deformation theory, and Extension theory. There exists extensive theory for calculating the cohomology of semi simple Lie algebras, but more tools are needed for calculating the cohomology of general Lie algebras. To calculate the cohomology of general Lie algebras, I used the symbolic software program called Maple. I wrote software to calculate the cohomology in several different ways. I wrote several programs to calculate the cohomology directly. This proved to be computationally expensive as the number of differential forms …


Predicting Cost Of Care In Total Hip Replacement, Cecily Corrine Froemke, Martin Zwick Nov 2018

Predicting Cost Of Care In Total Hip Replacement, Cecily Corrine Froemke, Martin Zwick

Complex Systems Faculty Publications and Presentations

Legislative reforms aimed at slowing growth of US healthcare costs are focused on achieving greater value per dollar. To increase value healthcare providers must not only provide high quality care, but deliver this care at a sustainable cost. Predicting risks that may lead to poor outcomes and higher costs enable providers to augment decision making for optimizing patient care and inform the risk stratification necessary in emerging reimbursement models. Healthcare delivery systems are looking at their high volume service lines and identifying variation in cost and outcomes in order to determine the patient factors that are driving this variation and …


Towards Optimal Implementation Of Decentralized Currencies: How To Best Select Probabilities In An Ethereum-Type Proof-Of-Stake Protocol, Thach N. Nguyen, Christian Servin, Vladik Kreinovich Nov 2018

Towards Optimal Implementation Of Decentralized Currencies: How To Best Select Probabilities In An Ethereum-Type Proof-Of-Stake Protocol, Thach N. Nguyen, Christian Servin, Vladik Kreinovich

Departmental Technical Reports (CS)

Nowadays, most financial transactions are based on a centralized system, when all the transaction records are stored in a central location. This centralization makes the financial system vulnerable to cyber-attacks. A natural way to make the financial system more robust and less vulnerable is to switch to decentralized currencies. Such a transition will also make financial system more transparent. Historically first currency of this type -- bitcoin -- use a large amount of electric energy to mine new coins and is, thus, not scalable to the level of financial system as a whole. A more realistic and less energy-consuming scheme …


Relativistic Effects Can Be Used To Achieve A Universal Square-Root (Or Even Faster) Computation Speedup, Olga Kosheleva, Vladik Kreinovich Nov 2018

Relativistic Effects Can Be Used To Achieve A Universal Square-Root (Or Even Faster) Computation Speedup, Olga Kosheleva, Vladik Kreinovich

Departmental Technical Reports (CS)

In this paper, we show that special relativity phenomenon can be used to reduce computation time of any algorithm from T to square root of T. For this purpose, we keep computers where they are, but the whole civilization starts moving around the computer -- at an increasing speed, reaching speeds close to the speed of light. A similar square-root speedup can be achieved if we place ourselves near a growing black hole. Combining the two schemes can lead to an even faster speedup: from time T to the 4-th order root of T.


Smartphone-Based Prenatal Education For Parents With Preterm Birth Risk Factors, U. Olivia Kim, K. Barnekow, Sheikh Iqbal Ahamed, S. Dreier, C. Jones, M. Taylor, Md Kamrul Hasan, M. A. Basir Oct 2018

Smartphone-Based Prenatal Education For Parents With Preterm Birth Risk Factors, U. Olivia Kim, K. Barnekow, Sheikh Iqbal Ahamed, S. Dreier, C. Jones, M. Taylor, Md Kamrul Hasan, M. A. Basir

Mathematics, Statistics and Computer Science Faculty Research and Publications

Objective

To develop an educational mobile application (app) for expectant parents diagnosed with risk factors for premature birth.

Methods

Parent and medical advisory panels delineated the vision for the app. The app helps prepare for preterm birth. For pilot testing, obstetricians offered the app between 18–22 weeks gestational age to English speaking parents with risk factors for preterm birth. After 4 weeks of use, each participant completed a questionnaire. The software tracked topics accessed and duration of use.

Results

For pilot testing, 31 participants were recruited and 28 completed the questionnaire. After app utilization, participants reported heightened awareness of preterm …


Introducing The Fractional Differentiation For Clinical Data-Justified Prostate Cancer Modelling Under Iad Therapy, Ozlem Ozturk Mizrak Oct 2018

Introducing The Fractional Differentiation For Clinical Data-Justified Prostate Cancer Modelling Under Iad Therapy, Ozlem Ozturk Mizrak

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.


Using Magic In Computing Education And Outreach, Ronald I. Greenberg, Dale F. Reed Oct 2018

Using Magic In Computing Education And Outreach, Ronald I. Greenberg, Dale F. Reed

Computer Science: Faculty Publications and Other Works

This special session explores the use of magic tricks based on computer science ideas; magic tricks help grab students' attention and can motivate them to invest more deeply in underlying CS concepts. Error detection ideas long used by computer scientists provide a particularly rich basis for working such "magic'', with a CS Unplugged parity check activity being a notable example. Prior work has shown that one can perform much more sophisticated tricks than the relatively well-known CS Unplugged activity, and these tricks can motivate analyses across a wide variety of computer science concepts and are relevant to learning objectives across …


Evaluating Annual Fixed Wing Maintenance Costs, Kirsten Bunecke, Edward D. White, Jonathan D. Ritschel, Brett A. Bush Oct 2018

Evaluating Annual Fixed Wing Maintenance Costs, Kirsten Bunecke, Edward D. White, Jonathan D. Ritschel, Brett A. Bush

Faculty Publications

This article serves two purposes: first, to empirically model the annual percentage increase of operations and support (O&S) costs for fixed wing aircraft; and second, to place into the archival realm another reference for other researchers to consider when investigating other O&S topics. For this study of 21 different airframes grouped together at the Mission- Design Series (MDS), maintenance subcategories 3.1 Consumable Materials and Repair Parts, 3.2 Depot Level Repairables (DLR), and 3.4 Depot Maintenance accounted for an average 91.5% of annual organic maintenance costs. For contractor-maintained MDS, subcategory 3.7, Contractor Logistics Support (CLS) accounted for 96.6% of annual maintenance …


The Chapman Bone Algorithm: A Diagnostic Alternative For The Evaluation Of Osteoporosis, Elise Levesque, Anton Ketterer, Wajiha Memon, Cameron James, Noah Barrett, Cyril Rakovski, Frank Frisch Sep 2018

The Chapman Bone Algorithm: A Diagnostic Alternative For The Evaluation Of Osteoporosis, Elise Levesque, Anton Ketterer, Wajiha Memon, Cameron James, Noah Barrett, Cyril Rakovski, Frank Frisch

Mathematics, Physics, and Computer Science Faculty Articles and Research

Osteoporosis is the most common metabolic bone disease and goes largely undiagnosed throughout the world, due to the inaccessibility of DXA machines. Multivariate analyses of serum bone turnover markers were evaluated in 226 Orange County, California, residents with the intent to determine if serum osteocalcin and serum pyridinoline cross-links could be used to detect the onset of osteoporosis as effectively as a DXA scan. Descriptive analyses of the demographic and lab characteristics of the participants were performed through frequency, means and standard deviation estimations. We implemented logistic regression modeling to find the best classification algorithm for osteoporosis. All calculations and …


A Symmetry-Based Explanation Of The Main Idea Behind Chubanov's Linear Programming Algorithm, Olga Kosheleva, Vladik Kreinovich, Thongchai Dumrongpokaphan Sep 2018

A Symmetry-Based Explanation Of The Main Idea Behind Chubanov's Linear Programming Algorithm, Olga Kosheleva, Vladik Kreinovich, Thongchai Dumrongpokaphan

Departmental Technical Reports (CS)

Many important real-life optimization problems can be described as optimizing a linear objective function under linear constraints -- i.e., as a linear programming problem. This problem is known to be not easy to solve. Reasonably natural algorithms -- such as iterative constraint satisfaction or simplex method -- often require exponential time. There exist efficient polynomial-time algorithms, but these algorithms are complicated and not very intuitive. Also, in contrast to many practical problems which can be computed faster by using parallel computers, linear programming has been proven to be the most difficult to parallelize. Recently, Sergei Chubanov proposed a modification of …


Semicontinuity Of Betweenness Functions, Paul Bankston, Aisling Mccluskey, Richard J. Smith Sep 2018

Semicontinuity Of Betweenness Functions, Paul Bankston, Aisling Mccluskey, Richard J. Smith

Mathematics, Statistics and Computer Science Faculty Research and Publications

A ternary relational structure〈X,[⋅,⋅,⋅]〉, interpreting a notion of betweenness, gives rise to the family of intervals, with interval [a,b] being defined as the set of elements of X between a and b. Under very reasonable circumstances, X is also equipped with some topological structure, in such a way that each interval is a closed nonempty subset of X. The question then arises as to the continuity behavior—within the hyperspace context—of the betweenness function {x,y}↦[x,y]. We investigate two broad scenarios: the first involves metric spaces and Menger's betweenness interpretation; the second deals with continua and the subcontinuum interpretation.


The Transmuted Geometric-Quadratic Hazard Rate Distribution: Development, Properties, Characterizations And Applications, Fiaz Ahmad Bhatti, Gholamhossein Hamedani, Mustafa Ç. Korkmaz, Munir Ahmad Aug 2018

The Transmuted Geometric-Quadratic Hazard Rate Distribution: Development, Properties, Characterizations And Applications, Fiaz Ahmad Bhatti, Gholamhossein Hamedani, Mustafa Ç. Korkmaz, Munir Ahmad

Mathematics, Statistics and Computer Science Faculty Research and Publications

We propose a five parameter transmuted geometric quadratic hazard rate (TG-QHR) distribution derived from mixture of quadratic hazard rate (QHR), geometric and transmuted distributions via the application of transmuted geometric-G (TG-G) family of Afify et al.(Pak J Statist 32(2), 139-160, 2016). Some of its structural properties are studied. Moments, incomplete moments, inequality measures, residual life functions and some other properties are theoretically taken up. The TG-QHR distribution is characterized via different techniques. Estimates of the parameters for TG-QHR distribution are obtained using maximum likelihood method. The simulation studies are performed on the basis of graphical results to illustrate the performance …


Automatic Knowledge Extraction From Ocr Documents Using Hierarchical Document Analysis, Mohammad Masum, Sai Kosaraju, Tanju Bayramoglu, Girish Modgil, Mingon Kang Aug 2018

Automatic Knowledge Extraction From Ocr Documents Using Hierarchical Document Analysis, Mohammad Masum, Sai Kosaraju, Tanju Bayramoglu, Girish Modgil, Mingon Kang

Published and Grey Literature from PhD Candidates

Industries can improve their business efficiency by analyzing and extracting relevant knowledge from large numbers of documents. Knowledge extraction manually from large volume of documents is labor intensive, unscalable and challenging. Consequently, there have been a number of attempts to develop intelligent systems to automatically extract relevant knowledge from OCR documents. Moreover, the automatic system can improve the capability of search engine by providing application-specific domain knowledge. However, extracting the efficient information from OCR documents is challenging due to highly unstructured format. In this paper, we propose an efficient framework for a knowledge extraction system that takes keywords based queries …


Why Bohmian Approach To Quantum Econometrics: An Algebraic Explanation, Vladik Kreinovich, Olga Kosheleva, Songsak Sriboonchitta Aug 2018

Why Bohmian Approach To Quantum Econometrics: An Algebraic Explanation, Vladik Kreinovich, Olga Kosheleva, Songsak Sriboonchitta

Departmental Technical Reports (CS)

Many equations in economics and finance are very complex. As a result, existing methods of solving these equations are very complicated and time-consuming. In many practical situations, more efficient algorithms for solving new complex equations appear when it turns out that these equations can be reduced to equations from other application areas -- equations for which more efficient algorithms are already known. It turns out that some equations in economics and finance can be reduced to equations from physics -- namely, from quantum physics. The resulting approach for solving economic equations is known as quantum econometrics. In quantum physics, …


Empirical Bayesian Approach To Testing Multiple Hypotheses With Separate Priors For Left And Right Alternatives, Naveen K. Bansal, Mehdi Maadooliat, Steven J. Schrodi Aug 2018

Empirical Bayesian Approach To Testing Multiple Hypotheses With Separate Priors For Left And Right Alternatives, Naveen K. Bansal, Mehdi Maadooliat, Steven J. Schrodi

Mathematics, Statistics and Computer Science Faculty Research and Publications

We consider a multiple hypotheses problem with directional alternatives in a decision theoretic framework. We obtain an empirical Bayes rule subject to a constraint on mixed directional false discovery rate (mdFDR≤α) under the semiparametric setting where the distribution of the test statistic is parametric, but the prior distribution is nonparametric. We proposed separate priors for the left tail and right tail alternatives as it may be required for many applications. The proposed Bayes rule is compared through simulation against rules proposed by Benjamini and Yekutieli and Efron. We illustrate the proposed methodology for two sets of …


Reconstructability And Dynamics Of Elementary Cellular Automata, Martin Zwick Jul 2018

Reconstructability And Dynamics Of Elementary Cellular Automata, Martin Zwick

Complex Systems Faculty Publications and Presentations

Reconstructability analysis (RA) is a method to determine whether a multivariate relation, defined set- or information-theoretically, is decomposable with or without loss into lower ordinality relations. Set-theoretic RA (SRA) is used to characterize the mappings of elementary cellular automata. The decomposition possible for each mapping w/o loss is a better predictor than the λ parameter (Walker & Ashby, Langton) of chaos, & non-decomposable mappings tend to produce chaos. SRA yields not only the simplest lossless structure but also a vector of losses for all structures, indexed by parameter τ. These losses are analogous to transmissions in information-theoretic RA (IRA). IRA …


Cancerin: A Computational Pipeline To Infer Cancer-Associated Cerna Interaction Networks, Duc Do, Serdar Bozdag Jul 2018

Cancerin: A Computational Pipeline To Infer Cancer-Associated Cerna Interaction Networks, Duc Do, Serdar Bozdag

Mathematics, Statistics and Computer Science Faculty Research and Publications

MicroRNAs (miRNAs) inhibit expression of target genes by binding to their RNA transcripts. It has been recently shown that RNA transcripts targeted by the same miRNA could “compete” for the miRNA molecules and thereby indirectly regulate each other. Experimental evidence has suggested that the aberration of such miRNA-mediated interaction between RNAs—called competing endogenous RNA (ceRNA) interaction—can play important roles in tumorigenesis. Given the difficulty of deciphering context-specific miRNA binding, and the existence of various gene regulatory factors such as DNA methylation and copy number alteration, inferring context-specific ceRNA interactions accurately is a computationally challenging task. Here we propose a computational …