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Full-Text Articles in Computer Sciences

Extraction Of Patterns In Selected Network Traffic For A Precise And Efficient Intrusion Detection Approach, Priya Naran Rabadia Jan 2018

Extraction Of Patterns In Selected Network Traffic For A Precise And Efficient Intrusion Detection Approach, Priya Naran Rabadia

Theses: Doctorates and Masters

This thesis investigates a precise and efficient pattern-based intrusion detection approach by extracting patterns from sequential adversarial commands. As organisations are further placing assets within the cyber domain, mitigating the potential exposure of these assets is becoming increasingly imperative. Machine learning is the application of learning algorithms to extract knowledge from data to determine patterns between data points and make predictions. Machine learning algorithms have been used to extract patterns from sequences of commands to precisely and efficiently detect adversaries using the Secure Shell (SSH) protocol. Seeing as SSH is one of the most predominant methods of accessing systems it …


Application Of 3d Delaunay Triangulation In Fingerprint Authentication System, Wencheng Yang, Ahmed Ibrahim, Junaid Chaudhry, Song Wang, Jiankun Hu, Craig Valli Jan 2018

Application Of 3d Delaunay Triangulation In Fingerprint Authentication System, Wencheng Yang, Ahmed Ibrahim, Junaid Chaudhry, Song Wang, Jiankun Hu, Craig Valli

Research outputs 2014 to 2021

Biometric security has found many applications in Internet of Things (IoT) security. Many mobile devices including smart phones have supplied fingerprint authentication function. However, the authentication performance in such restricted environment has been downgraded significantly. A number of methods based on Delaunay triangulation have been proposed for minutiae-based fingerprint matching, due to some favorable properties of the Delaunay triangulation under image distortion. However, all existing methods are based on 2D pattern, of which each unit, a Delaunay triangle, can only provide limited discrimination ability and could cause low matching performance. In this paper, we propose a 3D Delaunay triangulation based …


Ransomware Behavioural Analysis On Windows Platforms, Nikolai Hampton, Zubair A. Baig, Sherali Zeadally Jan 2018

Ransomware Behavioural Analysis On Windows Platforms, Nikolai Hampton, Zubair A. Baig, Sherali Zeadally

Research outputs 2014 to 2021

Ransomware infections have grown exponentially during the recent past to cause major disruption in operations across a range of industries including the government. Through this research, we present an analysis of 14 strains of ransomware that infect Windows platforms, and we do a comparison of Windows Application Programming Interface (API) calls made through ransomware processes with baselines of normal operating system behaviour. The study identifies and reports salient features of ransomware as referred through the frequencies of API calls


Influence Of Substrate Stage Temperature And Rotation Rate On The Magneto-Optical Quality Of Rf-Sputtered Bi2.1dy0.9fe3.9ga1.1o12 Garnet Thin Films, Mohammad E. Alam, Mikhail Vasiliev, Kamal Alameh Jan 2018

Influence Of Substrate Stage Temperature And Rotation Rate On The Magneto-Optical Quality Of Rf-Sputtered Bi2.1dy0.9fe3.9ga1.1o12 Garnet Thin Films, Mohammad E. Alam, Mikhail Vasiliev, Kamal Alameh

Research outputs 2014 to 2021

Highly bismuth-substituted iron garnet thin films are prepared on quartz substrates by using a radio frequency (RF) magnetron sputtering technique. We study the factors (process parameters associated with the RF magnetron sputter deposition technique) affecting the magneto-optical (MO) properties of ferrite garnet films of composition Bi2.1Dy0.9Fe3.9Ga1.1O12. All films show high MO response across the visible range of wavelengths after being annealed. In particular, the effects of substrate stage temperature and rotation rate on the various properties of films are studied. Experimental results reveal that the characteristics of garnet films of this type can be tuned and optimized for use in …


Review Of Deep Learning Methods In Robotic Grasp Detection, Shehan Caldera, Alexander Rassau, Douglas Chai Jan 2018

Review Of Deep Learning Methods In Robotic Grasp Detection, Shehan Caldera, Alexander Rassau, Douglas Chai

Research outputs 2014 to 2021

For robots to attain more general-purpose utility, grasping is a necessary skill to master. Such general-purpose robots may use their perception abilities to visually identify grasps for a given object. A grasp describes how a robotic end-effector can be arranged to securely grab an object and successfully lift it without slippage. Traditionally, grasp detection requires expert human knowledge to analytically form the task-specific algorithm, but this is an arduous and time-consuming approach. During the last five years, deep learning methods have enabled significant advancements in robotic vision, natural language processing, and automated driving applications. The successful results of these methods …


Underwater Acoustic Signal Analysis Toolkit, Kirk Bienvenu Jr Dec 2017

Underwater Acoustic Signal Analysis Toolkit, Kirk Bienvenu Jr

LSU New Orleans Theses and Dissertations

This project started early in the summer of 2016 when it became evident there was a need for an effective and efficient signal analysis toolkit for the Littoral Acoustic Demonstration Center Gulf Ecological Monitoring and Modeling (LADC-GEMM) Research Consortium. LADC-GEMM collected underwater acoustic data in the northern Gulf of Mexico during the summer of 2015 using Environmental Acoustic Recording Systems (EARS) buoys. Much of the visualization of data was handled through short scripts and executed through terminal commands, each time requiring the data to be loaded into memory and parameters to be fed through arguments. The vision was to develop …


Breadcrumbs: Privacy As A Privilege, Prachi Bhardwaj Dec 2017

Breadcrumbs: Privacy As A Privilege, Prachi Bhardwaj

Capstones

Breadcrumbs: Privacy as a Privilege Abstract

By: Prachi Bhardwaj

In 2017, the world saw more data breaches than in any year prior. The count was more than the all-time high record in 2016, which was 40 percent more than the year before that.

That’s because consumer data is incredibly valuable today. In the last three decades, data storage has gone from being stored physically to being stored almost entirely digitally, which means consumer data is more accessible and applicable to business strategies. As a result, companies are gathering data in ways previously unknown to the average consumer, and hackers are …


Understanding Sleep In Pediatric Patients With Sickle Cell Disease Admitted For Vaso-Occlusive Pain Crisis Through Objective Data, Kalindi Narine, Fan Yang, Tanvi Banerjee, Jude Jonassaint, Nirmish Shah Dec 2017

Understanding Sleep In Pediatric Patients With Sickle Cell Disease Admitted For Vaso-Occlusive Pain Crisis Through Objective Data, Kalindi Narine, Fan Yang, Tanvi Banerjee, Jude Jonassaint, Nirmish Shah

Computer Science and Engineering Faculty Publications

Sickle cell disease (SCD) is an inherited red cell disorder that leads to sickling of red blood cells, anemia and vaso-occlusion. The most common reason for hospitalization and morbidity in children is pain due to vaso-occlusive crisis (VOC). Importantly, poor sleep quality can lead to increased pain the subsequent day and nocturnal pain leads to reduced deep sleep, both which can then modify pain sensitivity. Studies using sleep diaries have shown this cyclical relationship between sleep and pain. Frequent occurrences of restless sleep are therefore believed to contribute to an increased severity and intensity of pain episodes. There is very …


College Of Engineering Senior Design Competition Fall 2017, University Of Nevada, Las Vegas Dec 2017

College Of Engineering Senior Design Competition Fall 2017, University Of Nevada, Las Vegas

Fred and Harriet Cox Senior Design Competition Projects

Part of every UNLV engineering student’s academic experience, the senior design project stimulates engineering innovation and entrepreneurship. Each student in their senior year chooses, plans, designs, and prototypes a product in this required element of the curriculum. A capstone to the student’s educational career, the senior design project encourages the student to use everything learned in the engineering program to create a practical, real world solution to an engineering challenge. The senior design competition helps focus the senior students in increasing the quality and potential for commercial application for their design projects. Judges from local industry evaluate the projects on …


Process Models Discovery And Traces Classification: A Fuzzy-Bpmn Mining Approach., Kingsley Okoye Dr, Usman Naeem Dr, Syed Islam Dr, Abdel-Rahman H. Tawil Dr, Elyes Lamine Dr Dec 2017

Process Models Discovery And Traces Classification: A Fuzzy-Bpmn Mining Approach., Kingsley Okoye Dr, Usman Naeem Dr, Syed Islam Dr, Abdel-Rahman H. Tawil Dr, Elyes Lamine Dr

Journal of International Technology and Information Management

The discovery of useful or worthwhile process models must be performed with due regards to the transformation that needs to be achieved. The blend of the data representations (i.e data mining) and process modelling methods, often allied to the field of Process Mining (PM), has proven to be effective in the process analysis of the event logs readily available in many organisations information systems. Moreover, the Process Discovery has been lately seen as the most important and most visible intellectual challenge related to the process mining. The method involves automatic construction of process models from event logs about any domain …


Design And Implementation Of A Stand-Alone Tool For Metabolic Simulations, Milad Ghiasi Rad Dec 2017

Design And Implementation Of A Stand-Alone Tool For Metabolic Simulations, Milad Ghiasi Rad

School of Computing: Dissertations, Theses, and Student Research

In this thesis, we present the design and implementation of a stand-alone tool for metabolic simulations. This system is able to integrate custom-built SBML models along with external user’s input information and produces the estimation of any reactants participating in the chain of the reactions in the provided model, e.g., ATP, Glucose, Insulin, for the given duration using numerical analysis and simulations. This tool offers the food intake arguments in the calculations to consider the personalized metabolic characteristics in the simulations. The tool has also been generalized to take into consideration of temporal genomic information and be flexible for simulation …


An Unmanned Aerial System For Prescribed Fires, Evan M. Beachly Dec 2017

An Unmanned Aerial System For Prescribed Fires, Evan M. Beachly

School of Computing: Dissertations, Theses, and Student Research

Prescribed fires can lessen wildfire severity and control invasive species, but some terrains may be difficult, dangerous, or costly to burn with existing tools. This thesis presents the design of an unmanned aerial system that can ignite prescribed fires from the air, with less cost and risk than with aerial ignition from a manned aircraft. The prototype was evaluated in-lab and successfully used to ignite interior areas of two prescribed fires. Additionally, we introduce an approach that integrates a lightweight fire simulation to autonomously plan safe flight trajectories and suggest effective fire lines. Both components are unique in that they …


Law Enforcement Resource Optimization With Response Time Guarantees, Jonathan Chase, Jiali Du, Na Fu, Truc Viet Le, Hoong Chuin Lau Dec 2017

Law Enforcement Resource Optimization With Response Time Guarantees, Jonathan Chase, Jiali Du, Na Fu, Truc Viet Le, Hoong Chuin Lau

Research Collection School Of Computing and Information Systems

In a security-conscious world, and with the rapid increase in the global urbanized population, there is a growing challenge for law enforcement agencies to efficiently respond to emergency calls. We consider the problem of spatially and temporally optimizing the allocation of law enforcement resources such that the quality of service (QoS) in terms of emergency response time can be guaranteed. To solve this problem, we provide a spatio-temporal MILP optimization model, which we learn from a real-world dataset of incidents and dispatching records, and solve by existing solvers. One key feature of our proposed model is the introduction of risk …


Multiple Content Adaptive Intelligent Watermarking Schemes For The Protection Of Blocks Of A Document Image, Chetan Kr Mr., S Nirmala Dr. Dec 2017

Multiple Content Adaptive Intelligent Watermarking Schemes For The Protection Of Blocks Of A Document Image, Chetan Kr Mr., S Nirmala Dr.

Journal of Digital Forensics, Security and Law

Most of the documents contain different types of information such as white space, static information and dynamic information or mix of static and dynamic information. In this paper, multiple watermarking schemes are proposed for protection of the information content. The proposed approach comprises of three phases. In Phase-1, the edges of the source document image are extracted and the edge image is decomposed into blocks of uniform size. In Phase-2, GLCM features like energy, homogeneity, contrast and correlation are extracted from each block and the blocks are classified as no-information, static, dynamic and mix of static and dynamic information content …


A Data Hiding Scheme Based On Chaotic Map And Pixel Pairs, Sengul Dogan Sd Dec 2017

A Data Hiding Scheme Based On Chaotic Map And Pixel Pairs, Sengul Dogan Sd

Journal of Digital Forensics, Security and Law

Information security is one of the most common areas of study today. In the literature, there are many algorithms developed in the information security. The Least Significant Bit (LSB) method is the most known of these algorithms. LSB method is easy to apply however it is not effective on providing data privacy and robustness. In spite of all its disadvantages, LSB is the most frequently used algorithm in literature due to providing high visual quality. In this study, an effective data hiding scheme alternative to LSB, 2LSBs, 3LSBs and 4LSBs algorithms (known as xLSBs), is proposed. In this method, random …


Policy Gradient With Value Function Approximation For Collective Multiagent Planning, Duc Thien Nguyen, Akshat Kumar, Hoong Chuin Lau Dec 2017

Policy Gradient With Value Function Approximation For Collective Multiagent Planning, Duc Thien Nguyen, Akshat Kumar, Hoong Chuin Lau

Research Collection School Of Computing and Information Systems

Decentralized (PO)MDPs provide an expressive framework for sequential decision making in a multiagent system. Given their computational complexity, recent research has focused on tractable yet practical subclasses of Dec-POMDPs. We address such a subclass called CDec-POMDP where the collective behavior of a population of agents affects the joint-reward and environment dynamics. Our main contribution is an actor-critic (AC) reinforcement learning method for optimizing CDec-POMDP policies. Vanilla AC has slow convergence for larger problems. To address this, we show how a particular decomposition of the approximate action-value function over agents leads to effective updates, and also derive a new way to …


A Selective-Discrete Particle Swarm Optimization Algorithm For Solving A Class Of Orienteering Problems, Aldy Gunawan, Vincent F. Yu, Perwira Redi, Parida Jewpanya, Hoong Chuin Lau Dec 2017

A Selective-Discrete Particle Swarm Optimization Algorithm For Solving A Class Of Orienteering Problems, Aldy Gunawan, Vincent F. Yu, Perwira Redi, Parida Jewpanya, Hoong Chuin Lau

Research Collection School Of Computing and Information Systems

This study addresses a class of NP-hard problem called the Orienteering Problem (OP), which belongs to a well-known class of vehicle routing problems. In the OP, a set of nodes that associated with a location and a score is given. The time required to travel between each pair of nodes is known in advance. The total travel time is limited by a predetermined time budget. The objective is to select a subset of nodes to be visited that maximizes the total collected score within a path. The Team OP (TOP) is an extension of OP that incorporates multiple paths. Another …


Graphmp: An Efficient Semi-External-Memory Big Graph Processing System On A Single Machine, Peng Sun, Yonggang Wen, Nguyen Binh Duong Ta, Xiaokui Xiao Dec 2017

Graphmp: An Efficient Semi-External-Memory Big Graph Processing System On A Single Machine, Peng Sun, Yonggang Wen, Nguyen Binh Duong Ta, Xiaokui Xiao

Research Collection School Of Computing and Information Systems

Recent studies showed that single-machine graph processing systems can be as highly competitive as clusterbased approaches on large-scale problems. While several outof-core graph processing systems and computation models have been proposed, the high disk I/O overhead could significantly reduce performance in many practical cases. In this paper, we propose GraphMP to tackle big graph analytics on a single machine. GraphMP achieves low disk I/O overhead with three techniques. First, we design a vertex-centric sliding window (VSW) computation model to avoid reading and writing vertices on disk. Second, we propose a selective scheduling method to skip loading and processing unnecessary edge …


Who Are Your Users? Comparing Media Professionals' Preconception Of Users To Data-Driven Personas, Lene Nielsen, Soon-Gyu Jung, Jisun An, Joni Salminen, Haewoon Kwak, Bernard J. Jansen Dec 2017

Who Are Your Users? Comparing Media Professionals' Preconception Of Users To Data-Driven Personas, Lene Nielsen, Soon-Gyu Jung, Jisun An, Joni Salminen, Haewoon Kwak, Bernard J. Jansen

Research Collection School Of Computing and Information Systems

One of the reasons for using personas is to align user understandings across project teams and sites. As part of a larger persona study, at Al Jazeera English (AJE), we conducted 16 qualitative interviews with media producers, the end users of persona descriptions. We asked the participants about their understanding of a typical AJE media consumer, and the variety of answers shows that the understandings are not aligned and are built on a mix of own experiences, own self, assumptions, and data given by the company. The answers are sometimes aligned with the data-driven personas and sometimes not. The end …


Proactive Sequential Resource (Re)Distribution For Improving Efficiency In Urban Environments, Supriyo Ghosh Dec 2017

Proactive Sequential Resource (Re)Distribution For Improving Efficiency In Urban Environments, Supriyo Ghosh

Dissertations and Theses Collection (Open Access)

Due to the increasing population and lack of coordination, there is a mismatch in supply and demand of common resources (e.g., shared bikes, ambulances, taxis) in urban environments, which has deteriorated a wide variety of quality of life metrics such as success rate in issuing shared bikes, response times for emergency needs, waiting times in queues etc. Thus, in my thesis, I propose efficient algorithms that optimise the quality of life metrics by proactively redistributing the resources using intelligent operational (day-to-day) and strategic (long-term) decisions in the context of urban transportation and health & safety. For urban transportation, Bike Sharing …


A Framework For Clustering And Adaptive Topic Tracking On Evolving Text And Social Media Data Streams., Gopi Chand Nutakki Dec 2017

A Framework For Clustering And Adaptive Topic Tracking On Evolving Text And Social Media Data Streams., Gopi Chand Nutakki

Electronic Theses and Dissertations

Recent advances and widespread usage of online web services and social media platforms, coupled with ubiquitous low cost devices, mobile technologies, and increasing capacity of lower cost storage, has led to a proliferation of Big data, ranging from, news, e-commerce clickstreams, and online business transactions to continuous event logs and social media expressions. These large amounts of online data, often referred to as data streams, because they get generated at extremely high throughputs or velocity, can make conventional and classical data analytics methodologies obsolete. For these reasons, the issues of management and analysis of data streams have been researched extensively …


Asynchronous 3d (Async3d): Design Methodology And Analysis Of 3d Asynchronous Circuits, Francis Corpuz Sabado Dec 2017

Asynchronous 3d (Async3d): Design Methodology And Analysis Of 3d Asynchronous Circuits, Francis Corpuz Sabado

Graduate Theses and Dissertations

This dissertation focuses on the application of 3D integrated circuit (IC) technology on asynchronous logic paradigms, mainly NULL Convention Logic (NCL) and Multi-Threshold NCL (MTNCL). It presents the Async3D tool flow and library for NCL and MTNCL 3D ICs. It also analyzes NCL and MTNCL circuits in 3D IC. Several FIR filter designs were implement in NCL, MTNCL, and synchronous architecture to compare synchronous and asynchronous circuits in 2D and 3D ICs. The designs were normalized based on performance and several metrics were measured for comparison. Area, interconnect length, power consumption, and power density were compared among NCL, MTNCL, and …


Vkse-Mo: Verifiable Keyword Search Over Encrypted Data In Multi-Owner Settings, Yinbin Miao, Jianfeng Ma, Ximeng Liu, Junwei Zhang, Zhiquan Liu Dec 2017

Vkse-Mo: Verifiable Keyword Search Over Encrypted Data In Multi-Owner Settings, Yinbin Miao, Jianfeng Ma, Ximeng Liu, Junwei Zhang, Zhiquan Liu

Research Collection School Of Computing and Information Systems

Searchable encryption (SE) techniques allow cloud clients to easily store data and search encrypted data in a privacy-preserving manner, where most of SE schemes treat the cloud server as honest-but-curious. However, in practice, the cloud server is a semi-honest-but-curious third-party, which only executes a fraction of search operations and returns a fraction of false search results to save its computational and bandwidth resources. Thus, it is important to provide a results verification method to guarantee the correctness of the search results. Existing SE schemes allow multiple data owners to upload different records to the cloud server, but these schemes have …


Efficient Gate System Operations For A Multipurpose Port Using Simulation Optimization, Ketki Kulkarni, Trong Khiem Tran, Hai Wang, Hoong Chuin Lau Dec 2017

Efficient Gate System Operations For A Multipurpose Port Using Simulation Optimization, Ketki Kulkarni, Trong Khiem Tran, Hai Wang, Hoong Chuin Lau

Research Collection School Of Computing and Information Systems

Port capacity is determined by three major infrastructural resources namely, berths, yards and gates. Theadvertised capacity is constrained by the least of the capacities of the three resources. While a lot ofattention has been paid to optimizing berth and yard capacities, not much attention has been given toanalyzing the gate capacity. The gates are a key node between the land-side and sea-side operations in anocean-to-cities value chain. The gate system under consideration, located at an important port in an Asiancity, is a multi-class parallel queuing system with non-homogeneous Poisson arrivals. It is hard to obtaina closed form analytic approach for …


Graph-Based Latent Embedding, Annotation And Representation Learning In Neural Networks For Semi-Supervised And Unsupervised Settings, Ismail Ozsel Kilinc Nov 2017

Graph-Based Latent Embedding, Annotation And Representation Learning In Neural Networks For Semi-Supervised And Unsupervised Settings, Ismail Ozsel Kilinc

USF Tampa Graduate Theses and Dissertations

Machine learning has been immensely successful in supervised learning with outstanding examples in major industrial applications such as voice and image recognition. Following these developments, the most recent research has now begun to focus primarily on algorithms which can exploit very large sets of unlabeled examples to reduce the amount of manually labeled data required for existing models to perform well. In this dissertation, we propose graph-based latent embedding/annotation/representation learning techniques in neural networks tailored for semi-supervised and unsupervised learning problems. Specifically, we propose a novel regularization technique called Graph-based Activity Regularization (GAR) and a novel output layer modification called …


Tracking You Through Dns Traffic: Linking User Sessions By Clustering With Dirichlet Mixture Model, Mingxuan Sun, Junjie Zhang, Guangyue Xu, Dae Wook Kim Nov 2017

Tracking You Through Dns Traffic: Linking User Sessions By Clustering With Dirichlet Mixture Model, Mingxuan Sun, Junjie Zhang, Guangyue Xu, Dae Wook Kim

Computer Science and Engineering Faculty Publications

The Domain Name System (DNS), which does not encrypt domain names such as "bank.us" and "dentalcare.com", commonly accurately reflects the specific network services. Therefore, DNS-based behavioral analysis is extremely attractive for many applications such as forensics investigation and online advertisement. Traditionally, a user can be trivially and uniquely identified by the device’s IP address if it is static (i.e., a desktop or a laptop). As more and more wireless and mobile devices are deeply ingrained in our lives and the dynamic IP address such as DHCP has been widely applied, it becomes almost impossible to use one IP address to …


Reengineering A 2-Tier Database Application With Software Architecture, Hong G. Jung Nov 2017

Reengineering A 2-Tier Database Application With Software Architecture, Hong G. Jung

ASA Multidisciplinary Research Symposium

The purpose of this research is to demonstrate how to reengineer a legacy Database Application using to a target system with MVC and 3-layered architecture. A Coffee Inventory Management database application is used for legacy application. The benefits of the reengineering are discussed.


Wearete: A Scalable Wearable E-Textile Triboelectric Energy Harvesting System For Human Motion Scavenging, Xian Li, Ye Sun Nov 2017

Wearete: A Scalable Wearable E-Textile Triboelectric Energy Harvesting System For Human Motion Scavenging, Xian Li, Ye Sun

Michigan Tech Publications, Part 1

In this paper, we report the design, experimental validation and application of a scalable, wearable e-textile triboelectric energy harvesting (WearETE) system for scavenging energy from activities of daily living. The WearETE system features ultra-low-cost material and manufacturing methods, high accessibility, and high feasibility for powering wearable sensors and electronics. The foam and e-textile are used as the two active tribomaterials for energy harvester design with the consideration of flexibility and wearability. A calibration platform is also developed to quantify the input mechanical power and power efficiency. The performance of the WearETE system for human motion scavenging is validated and calibrated …


Bikemate: Bike Riding Behavior Monitoring With Smartphones, Weixi Gu, Zimu Zhou, Yuxun Zhou, Han Zou, Yunxin Liu, Costas J. Spanos, Lin Zhang Nov 2017

Bikemate: Bike Riding Behavior Monitoring With Smartphones, Weixi Gu, Zimu Zhou, Yuxun Zhou, Han Zou, Yunxin Liu, Costas J. Spanos, Lin Zhang

Research Collection School Of Computing and Information Systems

Detecting dangerous riding behaviors is of great importance to improve bicycling safety. Existing bike safety precautionary measures rely on dedicated infrastructures that incur high installation costs. In this work, we propose BikeMate, a ubiquitous bicycling behavior monitoring system with smartphones. BikeMate invokes smartphone sensors to infer dangerous riding behaviors including lane weaving, standing pedalling and wrong-way riding. For easy adoption, BikeMate leverages transfer learning to reduce the overhead of training models for different users, and applies crowdsourcing to infer legal riding directions without prior knowledge. Experiments with 12 participants show that BikeMate achieves an overall accuracy of 86.8% for lane …


Reconstructing Yeasts Phylogenies And Ancestors From Whole Genome Data, Bing Feng, Yu Ling, Lingxi Zhou, Roufan Xia, Fei Hu, Chao Liu Nov 2017

Reconstructing Yeasts Phylogenies And Ancestors From Whole Genome Data, Bing Feng, Yu Ling, Lingxi Zhou, Roufan Xia, Fei Hu, Chao Liu

Faculty Publications

Phylogenetic studies aim to discover evolutionary relationships and histories. These studies are based on similarities of morphological characters and molecular sequences. Currently, widely accepted phylogenetic approaches are based on multiple sequence alignments, which analyze shared gene datasets and concatenate/coalesce these results to a final phylogeny with maximum support. However, these approaches still have limitations, and often have conflicting results with each other. Reconstructing ancestral genomes helps us understand mechanisms and corresponding consequences of evolution. Most existing genome level phylogeny and ancestor reconstruction methods can only process simplified real genome datasets or simulated datasets with identical genome content, unique genome markers, …