Computer Sciences Commons^™

Relation Prediction Over Biomedical Knowledge Bases For Drug Repositioning, Mehmet Bakal

Theses and Dissertations--Computer Science

Identifying new potential treatment options for medical conditions that cause human disease burden is a central task of biomedical research. Since all candidate drugs cannot be tested with animal and clinical trials, in vitro approaches are first attempted to identify promising candidates. Likewise, identifying other essential relations (e.g., causation, prevention) between biomedical entities is also critical to understand biomedical processes. Hence, it is crucial to develop automated relation prediction systems that can yield plausible biomedical relations to expedite the discovery process. In this dissertation, we demonstrate three approaches to predict treatment relations between biomedical entities for the drug repositioning task …

Word Sense Disambiguation Using Semantic Kernels With Class-Based Term Values, Ayşe Berna Altinel, Murat Can Gani̇z, Bi̇lge Şi̇pal, Eren Can Erkaya, Onur Can Yücedağ, Muhammed Ali̇ Doğan

Turkish Journal of Electrical Engineering and Computer Sciences

In this study, we propose several semantic kernels for word sense disambiguation (WSD). Our approaches adapt the intuition that class-based term values help in resolving ambiguity of polysemous words in WSD. We evaluate our proposed approaches with experiments, utilizing various sizes of training sets of disambiguated corpora (SensEval). With these experiments we try to answer the following questions: 1.) Do our semantic kernel formulations yield higher classification performance than traditional linear kernel?, 2.) Under which conditions a kernel design performs better than others?, 3.) Does the addition of class labels into standard term-document matrix improve the classification accuracy?, 4.) Is …

A Blockchain-Enabled Peer-To-Peer Energy Trading Platform For Managing Complex Exchange Of Kilowatt-Hours And Negawatts, Murat Kuzlu, Rasheq Rahman, Jason Lin

Engineering Technology Faculty Publications

Under the Department of Energy’s STTR funding, BEM Controls LLC performed research from July 2, 2018 to April 1, 2019. The purpose of this research was to design, develop and demonstrate the technical feasibility of the blockchain enabled energy trading platform for managing complex exchange of kilowatt hours and negawatts. The energy trading platform was developed in the open-source HyperLedger Fabric blockchain framework and the performance of the blockchain network was evaluated. Key research findings and results include (1) the successful design and development of an open-architecture blockchain-based energy trading platform able to execute smart contract transactions across eight use …

Computer-Aided Classification Of Impulse Oscillometric Measures Of Respiratory Small Airways Function In Children, Nancy Selene Avila

Open Access Theses & Dissertations

Computer-aided classification of respiratory small airways dysfunction is not an easy task. There is a need to develop more robust classifiers, specifically for children as the classification studies performed to date have the following limitations: 1) they include features derived from tests that are not suitable for children and 2) they cannot distinguish between mild and severe small airway dysfunction.

This Dissertation describes the classification algorithms with high discriminative capacity to distinguish different levels of respiratory small airways function in children (Asthma, Small Airways Impairment, Possible Small Airways Impairment, and Normal lung function). This ability came from innovative feature selection, …

A Practitioner Survey Exploring The Value Of Forensic Tools, Ai, Filtering, & Safer Presentation For Investigating Child Sexual Abuse Material, Laura Sanchez, Cinthya Grajeda, Ibrahim Baggili, Cory Hall

Electrical & Computer Engineering and Computer Science Faculty Publications

For those investigating cases of Child Sexual Abuse Material (CSAM), there is the potential harm of experiencing trauma after illicit content exposure over a period of time. Research has shown that those working on such cases can experience psychological distress. As a result, there has been a greater effort to create and implement technologies that reduce exposure to CSAM. However, not much work has explored gathering insight regarding the functionality, effectiveness, accuracy, and importance of digital forensic tools and data science technologies from practitioners who use them. This study focused specifically on examining the value practitioners give to the tools …

Antenna Selection And Transmission Power For Energy Efficiency In Downlink Massive Mimo Systems, Adeeb Salh, Lukman Audah, Nor Shahida Mohd Shah, Shipun Anuar Hamzah, Hasan Saeed Mir

Turkish Journal of Electrical Engineering and Computer Sciences

Massive multiinput-multioutput (M-MIMO) systems are crucial for maximizing energy efficiency (EE) in fifth-generation (5G) wireless networks. A M-MIMO system's achievable high data rate is highly related to the number of antennas, but increasing the number of antennas the system raises energy consumption. In this paper, we derive ergodic EE based on the optimal transmit power and joint optimization antenna selection (AS) with impact pilot reuse sequences (PRSs). We apply Newton's method and the Lagrange multiplier to derive jointly optimized AS and optimal transmission power under the effect of PRSs. The proposed algorithm prevents repeated searching for joint optimal AS and …

On Spectral Analysis Of The Internet Delay Space And Detecting Anomalous Routing Paths, Gonca Gürsun

Turkish Journal of Electrical Engineering and Computer Sciences

Latency is one of the most critical performance metrics for a wide range of applications. Therefore, it is important to understand the underlying mechanisms that give rise to the observed latency values and diagnose the ones that are unexpectedly high. In this paper, we study the Internet delay space via robust principal component analysis (RPCA). Using RPCA, we show that the delay space, i.e. the matrix of measured round trip times between end hosts, can be decomposed into two components: the estimated latency between end hosts with respect to the current state of the Internet and the inflation on the …

Measurement Of Network-Based And Random Meetings In Social Networks, Pranav Nerurkar, Madhav Chandane, Sunil Bhirud

Turkish Journal of Electrical Engineering and Computer Sciences

Social networks are created by the underlying behavior of the actors involved in them. Each actor has interactions with other actors in the network and these interactions decide whether a social relationship should develop between them. Such interactions may occur due to meeting processes such as chance-based meetings or network-based (choice) meetings. Depending upon which of these two types of interactions plays a greater role in creation of links, a social network shall evolve accordingly. This evolution shall result in the social network obtaining a suitable structure and certain unique features. The aim of this work is to determine the …

Refugees' Social Media Activities In Turkey: A Computational Analysis And Demonstration Method, Muhammed Abdullah Bülbül, Salah Haj Ismail

Turkish Journal of Electrical Engineering and Computer Sciences

This study performs a data analysis on refugees in Turkey based on their social media activities. In order to achieve this, we first propose a method to find their relevant public accounts and collect their activities generating a dataset. Then, we perform spatial and temporal analysis over this dataset to shed light on the most important topics and events discussed in social networks. We present the results graphically for ease of understanding and comparison. Our results indicate that we can reveal the most shared topics over a specific time and place as well as the change of pattern in refugees' …

Classification Of Generic System Dynamics Model Outputs Via Supervised Time Series Pattern Discovery, Mert Edali, Mustafa Gökçe Baydoğan, Gönenç Yücel

Turkish Journal of Electrical Engineering and Computer Sciences

System dynamics (SD) is a simulation-based approach for analyzing feedback-rich systems. An ideal SD modeling cycle requires evaluating the qualitative pattern characteristics of a large set of time series model output for testing, validation, scenario analysis, and policy analysis purposes. This traditionally requires expert judgement, which limits the extent of experimentation due to time constraints. Although time series recognition approaches can help to automate such an evaluation, utilization of them has been limited to a hidden Markov model classifier, namely the Indirect Structure Testing Software (ISTS) algorithm. Despite being used within several automated model-analysis tools, ISTS has several shortcomings. In …

Graph Analysis Of Network Flow Connectivity Behaviors, Hangyu Hu, Xuemeng Zhai, Mingda Wang, Guangmin Hu

Turkish Journal of Electrical Engineering and Computer Sciences

Graph-based approaches have been widely employed to facilitate in analyzing network flow connectivity behaviors, which aim to understand the impacts and patterns of network events. However, existing approaches suffer from lack of connectivity-behavior information and loss of network event identification. In this paper, we propose network flow connectivity graphs (NFCGs) to capture network flow behavior for modeling social behaviors from network entities. Given a set of flows, edges of a NFCG are generated by connecting pairwise hosts who communicate with each other. To preserve more information about network flows, we also embed node-ranking values and edge-weight vectors into the original …

Design And Development Of A Stewart Platform Assisted And Navigated Transsphenoidal Surgery, Selçuk Ki̇zi̇r, Zafer Bi̇ngül

Turkish Journal of Electrical Engineering and Computer Sciences

In this study, technical details of a Stewart platform (SP) based robotic system as an endoscope positioner and holder for endoscopic transsphenoidal surgery are presented. Inverse and forward kinematics, full dynamics, and the Jacobian matrix of the robotic system are derived and simulated in MATLAB/Simulink. The required control structure for the trajectory and position control of the SP is developed and verified by several experiments. The robotic system can be navigated using a six degrees of freedom (DOF) joystick and a haptic device with force feedback. Position and trajectory control of the SP in the joint space is achieved using …

A Comparative Study Of Author Gender Identification, Tuğba Yildiz

Turkish Journal of Electrical Engineering and Computer Sciences

In recent years, author gender identification has gained considerable attention in the fields of information retrieval and computational linguistics. In this paper, we employ and evaluate different learning approaches based on machine learning (ML) and neural network language models to address the problem of author gender identification. First, several ML classifiers are applied to the features obtained by bag-of-words. Secondly, datasets are represented by a low-dimensional real-valued vector using Word2vec, GloVe, and Doc2vec, which are on par with ML classifiers in terms of accuracy. Lastly, neural networks architectures, the convolution neural network and recurrent neural network, are trained and their …

Prediction Of Preference And Effect Of Music On Preference: A Preliminary Study On Electroencephalography From Young Women, Bülent Yilmaz, Cengi̇z Gazeloğlu, Fati̇h Altindi̇ş

Turkish Journal of Electrical Engineering and Computer Sciences

Neuromarketing is the application of the neuroscientific approaches to analyze and understand economically relevant behavior. In this study, the effect of loud and rhythmic music in a sample neuromarketing setup is investigated. The second aim was to develop an approach in the prediction of preference using only brain signals. In this work, 19-channel EEG signals were recorded and two experimental paradigms were implemented: no music/silence and rhythmic, loud music using a headphone, while viewing women shoes. For each 10-sec epoch, normalized power spectral density (PSD) of EEG data for six frequency bands was estimated using the Burg method. The effect …

Multiscanning Mode Laser Scanning Confocal Microscopy System, Mert Aktürk, Gökhan Gümüş, Baykal Sarioğlu, Yi̇ği̇t Dağhan Gökdel

Turkish Journal of Electrical Engineering and Computer Sciences

In this paper, a table-top, reflective mode, laser scanning confocal microscopy system that is capable of scanning the target specimen alternately through various scanning devices and methods is proposed. We have developed a laser scanning confocal microscopy system to utilize combinations of various scanning devices and methods and to be able to characterize the optical performance of different scanners and micromirrors that are frequently used in scanning microscopy systems such as multiphoton microscopy, optical coherence tomography, or confocal microscopy. By integrating the scanner to be characterized on the same optical path with a galvanometric scan mirror, which is the conventional …

Hybrid Self-Controlled Precharge-Free Cam Design For Low Power And High Performance, V V Satyanarayana Satti, Sridevi Sriadibhatla

Turkish Journal of Electrical Engineering and Computer Sciences

Content-addressable memory (CAM) is a prominent hardware for high-speed lookup search, but consumes larger power. Traditional NOR and NAND match-line (ML) architectures suffer from a short circuit current path sharing and charge sharing respectively during precharge. The recently proposed precharge-free CAM suffers from high search delay and the subsequently proposed self-controlled precharge-free CAM suffers from high power consumption. This paper presents a hybrid self-controlled precharge-free (HSCPF) CAM architecture, which uses a novel charge control circuitry to reduce search delay as well as power consumption. The proposed and existing CAM ML architectures were developed using CMOS 45nm technology node with a …

Structure Tensor Adaptive Total Variation For Image Restoration, Surya Prasath, Dang Nh Thanh

Turkish Journal of Electrical Engineering and Computer Sciences

Image denoising and restoration is one of the basic requirements in many digital image processing systems. Variational regularization methods are widely used for removing noise without destroying edges that are important visual cues. This paper provides an adaptive version of the total variation regularization model that incorporates structure tensor eigenvalues for better edge preservation without creating blocky artifacts associated with gradient-based approaches. Experimental results on a variety of noisy images indicate that the proposed structure tensor adaptive total variation obtains promising results and compared with other methods, gets better structure preservation and robust noise removal.

A Kalman Filter Application For Rainfall Estimation Using Radar Reflectivity Measurements, Engi̇n Maşazade, Ali̇ Kemal Bakir, Pinar Kirci

Turkish Journal of Electrical Engineering and Computer Sciences

The rainfall amount observed at a given location mostly depend on the cloud density, which can be quantified with the reflectivity values observed by meteorology weather radars. In this study, we aim to estimate the rainfall amount using a Kalman filter with radar reflectivity measurements. We first assume that the amount of rainfall observed at automatic weather observation stations (AWOSs) are elements of an unknown state vector and consider the Kalman filter process model as the true rainfall amounts observed at these AWOSs over time. For the measurement model of the Kalman filter, we use the radar reflectivity values observed …

Probabilistic Small-Signal Stability Analysis Of Power System With Solar Farm Integration, Samundra Gurung, Sumate Naetiladdanon, Anawach Sangswang

Turkish Journal of Electrical Engineering and Computer Sciences

Currently, large-scale solar farms are being rapidly integrated in electrical grids all over the world. However, the photovoltaic (PV) output power is highly intermittent in nature and can also be correlated with other solar farms located at different places. Moreover, the increasing PV penetration also results in large solar forecast error and its impact on power system stability should be estimated. The effects of these quantities on small-signal stability are difficult to quantify using deterministic techniques but can be conveniently estimated using probabilistic methods. For this purpose, the authors have developed a method of probabilistic analysis based on combined cumulant …

A Hybrid Model For The Prediction Of Aluminum Foil Output Thickness In Cold Rolling Process, Ali̇ Öztürk, Ri̇fat Şeherli̇

Turkish Journal of Electrical Engineering and Computer Sciences

This study proposes a hybrid model composed of multiple prediction algorithms and an autoregressive moving average (ARMA) module for the thickness prediction. In order to attain higher accuracy, the prediction algorithms were globally combined by simple voting to reduce the effect of the inductive bias imposed by each algorithm on the dataset. The global multiexpert combination (GMEC) system included the multilayer perceptron neural network (MLPNN), radial basis function network (RBFN), multiple linear regression (MLR), and support vector machines (SVM) algorithms. The proposed hybrid model extends the GMEC system by integrating an ARMA module for the output. On the test dataset, …

Optimal Training And Test Sets Design For Machine Learning, Burkay Genç, Hüseyi̇n Tunç

Turkish Journal of Electrical Engineering and Computer Sciences

In this paper, we describe histogram matching, a metric for measuring the distance of two datasets with exactly the same features, and embed it into a mixed integer programming formulation to partition a dataset into fixed size training and test subsets. The partition is done such that the pairwise distances between the dataset and the subsets are minimized with respect to histogram matching. We then conduct a numerical study using a well-known machine learning dataset. We demonstrate that the training set constructed with our approach provides feature distributions almost the same as the whole dataset, whereas training sets constructed via …

Triangular Slotted Ground Plane: A Key To Realizing High-Gain, Cross-Polarization-Free Microstrip Antenna With Improved Bandwidth, Abhijyoti Ghosh, Banani Basu

Turkish Journal of Electrical Engineering and Computer Sciences

A simple rectangular microstrip antenna with triangular slotted ground plane has been studied both theoretically and experimentally to improve shortcomings like low gain (5 - 6 dBi), narrow bandwidth (3% - 4%), and poor copolarization (CP) to cross-polarization (XP) isolation, i.e. polarization purity (typically 10 - 12 dB), of conventional rectangular microstrip patch antennas. By placing two pairs of triangular shaped slots on the ground plane just below the nonradiating edges of the patch, high gain (around 9 dBi) and more than 22 dB polarization purity over a wide elevation angle has been achieved. The proposed antenna covers almost the …

Invisible Watermarking Framework That Authenticates And Prevents The Visualization Of Anaglyph Images For Copyright Protection, David-Octavio Muñoz-Ramirez, Volodymyr Ponomaryov, Rogelio Reyes-Reyes, Clara Cruz-Ramos, Beatriz-Paulina Garcia-Salgado

Turkish Journal of Electrical Engineering and Computer Sciences

In this work, a watermarking framework to authenticate and protect the copyright that prevents the visualization of nonauthorized anaglyph images is proposed. Designed scheme embeds a binary watermark and the Blue channel of the anaglyph image into the discrete cosine transform domain of the original image. The proposed method applies the quantization index modulation-dither modulation algorithm and a combination of Bose-Chaudhuri-Hocquenghem with repetition codes, which permit to increase the capability in recovering the watermark. Additionally, Hash algorithm is used to scramble the component where the watermark should be embedding, guaranteeing a higher security performance of the scheme. This new technique …

Combined Feature Compression Encoding In Image Retrieval, Lu Huo, Leijie Zhang

Turkish Journal of Electrical Engineering and Computer Sciences

Recently, features extracted by convolutional neural networks (CNNs) are popularly used for image retrieval. In CNN representation, high-level features are usually chosen to represent the images in coarse-grained datasets, while mid-level features are successfully applied to describe the images for fine-grained datasets. In this paper, we combine these different levels of features as a joint feature to propose a robust representation that is suitable for both coarse-grained and fine-grained image retrieval datasets. In addition, in order to solve the problem that the efficiency of image retrieval is influenced by the dimensionality of indexing, a unified subspace learning model named spectral …

A Hybrid Of Tropical-Singular Value Decomposition Method For Salt And Pepper Noise Removal, Achmad Abdurrazzaq, Ismail Mohd, Ahmad Kadri Junoh, Zainab Yahya

Turkish Journal of Electrical Engineering and Computer Sciences

The unknown information contained in an image that causes the change of information in the image is called noise. In this paper, we propose a new method for removing salt and pepper noise by using singular value decomposition and the concept of tropical algebra operations. To determine the performance of the proposed method, 20 test images are used as samples. Then three different image quality assessments are used: peak signal-to-noise ratio (PSNR), structural similarity (SSIM), and image enhancement factor (IEF). In addition, six different filtering methods, i.e. MF, DWMF, PSMF, MDBUTM, NAFSM, and BPDF, are used to compare the performance …

A Novel Algorithm For Frequency Extraction Of Abs Signals By Using Dtdnns, Mohammad Ali Shafieian, Hamed Banizaman, Shahrzad Sedaghat

Turkish Journal of Electrical Engineering and Computer Sciences

Intelligent transportations system (ITSs) have emerged to increase safety and convenience of people in vehicles. In an ITS, communication devices in the vehicle or along the streets send the information gathered from the vehicle to information management centers as well as sending processed information to the vehicle. Furthermore, it is necessary to locate the exact location of the vehicle on a digital map in order to navigate the vehicle precisely in control and navigation systems. One of the technologies for this purpose is the antilock brake system (ABS), which can avoid accidents effectively and can also be utilized to determine …

Extending A Sentiment Lexicon With Synonym--Antonym Datasets: Swnettr++, Fati̇h Sağlam, Burkay Genç, Hayri̇ Sever

Turkish Journal of Electrical Engineering and Computer Sciences

In our previous studies on developing a general-purpose Turkish sentiment lexicon, we constructed SWNetTR-PLUS, a sentiment lexicon of 37K words. In this paper, we show how to use Turkish synonym and antonym word pairs to extend SWNetTR-PLUS by almost 33 % to obtain SWNetTR++, a Turkish sentiment lexicon of 49K words. The extension was done by transferring the problem into the graph domain, where nodes are words, and edges are synonym--antonym relations between words, and propagating the existing tone and polarity scores to the newly added words using an algorithm we have developed. We tested the existing and new lexicons …

Channel Estimation For Ofdm-Im Systems, Yusuf Acar, Sultan Aldirmaz Çolak, Ertuğrul Başar

Turkish Journal of Electrical Engineering and Computer Sciences

Orthogonal frequency division multiplexing with index modulation (OFDM-IM) has been recently proposed to increase the spectral efficiency and improve the error performance of multicarrier communication systems. However, all the OFDM-IM systems assume that the perfect channel state information is available at the receiver. Nevertheless, channel estimation is a challenging problem in practical wireless communication systems for coherent detection at the receiver. In this paper, a novel method based on the pilot symbol-aided channel estimation technique is proposed and evaluated for OFDM-IM systems. Pilot symbols, which are placed equidistantly, allow the regeneration of the response of the channel so that pilot …

Ingan/Gan Tandem Solar Cell Parameter Estimation: A Comparative Stud, Abdelmoumene Benayad, Smail Berrah

Turkish Journal of Electrical Engineering and Computer Sciences

In this paper, two hybrid estimation approaches, hybrid genetic algorithm (TR-GA) and hybrid particle swarm optimization (TR-PSO), are used to estimate single-diode model InGaN/GaN solar cell parameters from J?V experimental data under AM0 illumination. These parameters are photocurrent density ($J_{ph}$), reverse saturation current density ($J_{s}$), ideality factor ($A$), series resistance ($R_{s}$), and shunt resistance ($R_{sh}$). The trust region (TR) method used in both approaches provides the initial conditions and helps to avoid the problem of premature convergence (due to local minimum). Simulation results based on the minimization of the mean square error between experimental and theoretical J-V characteristics show that …

A New Failure Protection Algorithm For Circuit Breakers Using The Power Loss Of Switching Arc Incidents, Behnam Feizifar, Ömer Usta

Turkish Journal of Electrical Engineering and Computer Sciences

The principal function of circuit breakers (CBs) is to isolate a portion of the power network from the rest of it in a timely manner following an opening command. Any failure in the opening operation of CBs, especially following a fault condition, will almost certainly result in a catastrophic event. Therefore, the issue of failure detection of CBs is essential and has a vital role in power system protection. This paper presents a novel power-based algorithm for failure detection of CBs. The power loss of CBs due to an arcing event increases as the arcing time gets longer. The arcing …