Computer Sciences Commons^™

A Semantic Problem Solving Environment For Integrative Parasite Research: Identification Of Intervention Targets For Trypanosoma Cruzi, Priti Parikh, Todd Minning, Vinh Nguyen, Sarasi Lalithsena, Amir H. Asiaee, Satya S. Sahoo, Prashant Doshi, Rick L. Tarleton, Amit P. Sheth

Kno.e.sis Publications

Background: Research on the biology of parasites requires a sophisticated and integrated computational platform to query and analyze large volumes of data, representing both unpublished (internal) and public (external) data sources. Effective analysis of an integrated data resource using knowledge discovery tools would significantly aid biologists in conducting their research, for example, through identifying various intervention targets in parasites, and in deciding the future direction of ongoing as well as planned projects. A key challenge in achieving this objective is the heterogeneity between the internal lab data, usually stored as flat files, Excel spreadsheets or custom-built databases, and the external …

Responses To The 11/4/11 Ostp Data Rfi, David Lowe

Published Works

On November 3, 2011, OSTP released a Request for Information (RFI) soliciting public input on long-term preservation of, and public access to, the results of federally funded research, including digital data ,as required in the America COMPETES Reauthorization Act of 2010. Published here are the responses from David Lowe, Preservation Librarian and Digital Programs Team Leader at the University of Connecticut Libraries.

Cognitive Approaches For The Semantic Web, Dedre Gentner, Frank Van Harmelen, Pascal Hitzler, Krzysztof Janowicz, Kai-Uwe Kuhnberger

Computer Science and Engineering Faculty Publications

A major focus in the design of Semantic Web ontology languages used to be on finding a suitable balance between the expressivity of the language and the tractability of reasoning services defined over this language. This focus mirrors the original vision of a Web composed of machine readable and understandable data. Similarly to the classical Web a few years ago, the attention is recently shifting towards a user-centric vision of the Semantic Web. Essentially, the information stored on the Web is from and for humans. This new focus is not only reflected in the fast growing Linked Data Web but …

A Natural Language Interface Plug-In For Cooperative Query Answering In Biological Databases, Hasan M. Jamil

Wayne State University Associated BioMed Central Scholarship

Abstract

Background

One of the many unique features of biological databases is that the mere existence of a ground data item is not always a precondition for a query response. It may be argued that from a biologist's standpoint, queries are not always best posed using a structured language. By this we mean that approximate and flexible responses to natural language like queries are well suited for this domain. This is partly due to biologists' tendency to seek simpler interfaces and partly due to the fact that questions in biology involve high level concepts that are open to interpretations computed …

Privacy-Preserving Data Sharing In High Dimensional Regression And Classification Settings, Stephen E. Fienberg, Jiashun Jin

LARC Research Publications

We focus on the problem of multi-party data sharing in high dimensional data settings where the number of measured features (or the dimension) p is frequently much larger than the number of subjects (or the sample size) n, the so-called p>> n scenario that has been the focus of much recent statistical research. Here, we consider data sharing for two interconnected problems in high dimensional data analysis, namely the feature selection and classification. We characterize the notions of “cautious", “regular", and “generous" data sharing in terms of their privacy-preserving implications for the parties and their share of data, with focus …

Semantics Of Perception: Towards A Semantic Web Approach To Machine Perception, Cory Andrew Henson, Amit P. Sheth

Kno.e.sis Publications

The acts of observation and perception provide the building blocks for all human knowledge (Locke, 1690); they are the processes from which all ideas are born; and the sole bond connecting ourselves to the world around us. Now, with the advent of sensor networks capable of observation, this world may be directly accessible to machines. Missing from this vision, however, is the ability of machines to glean semantics from observation; to apprehend entities from detected qualities; to perceive. The systematic automation of this ability is the focus of machine perception -- the ability of computing machines to sense and interpret …

Web-Based Information/Knowledge Sharing System, Sai Laxmi Kotha

Theses Digitization Project

The purpose of this web application is to provide knowledge management for an institution and to build a private, custom tailored application which can be locally managed. The system is user-friendly with negligible risk of data mismanagement and a system with a high level of security through different levels of authentication.

Review-It Web Application, Nikhil Reddy Kasireddy

Theses Digitization Project

The purpose of this application is to help people find the business service they seek, read about the service provided, and read the reviews of previous customers and also the comments of the authenticated service provider/business owner. Review-it fills the gap between the service providers and their service reviewers.

A Scalable Distributed Syntactic, Semantic And Lexical Language Model, Ming Tan, Wenli Zhou, Lei Zheng, Shaojun Wang

Kno.e.sis Publications

This paper presents an attempt at building a large scale distributed composite language model that is formed by seamlessly integrating an n-gram model, a structured language model, and probabilistic latent semantic analysis under a directed Markov random field paradigm to simultaneously account for local word lexical information, mid-range sentence syntactic structure, and long-span document semantic content. The composite language model has been trained by performing a convergent N-best list approximate EM algorithm and a follow-up EM algorithm to improve word prediction power on corpora with up to a billion tokens and stored on a supercomputer. The large scale distributed composite …

Alignment-Based Querying Of Linked Open Data, Amit Krishna Joshi, Prateek Jain, Pascal Hitzler, Peter Z. Yeh, Kunal Verma, Amit P. Sheth, Mariana Damova

Kno.e.sis Publications

The Linked Open Data (LOD) cloud is rapidly becoming the largest interconnected source of structured data on diverse domains. The potential of the LOD cloud is enormous, ranging from solving challenging AI issues such as open domain question answering to automated knowledge discovery. However, due to an inherent distributed nature of LOD and a growing number of ontologies and vocabularies used in LOD datasets, querying over multiple datasets and retrieving LOD data remains a challenging task. In this paper, we propose a novel approach to querying linked data by using alignments for processing queries whose constituent data come from heterogeneous …

Trust And Reputation For Successful Software Self-Organisation, Pierpaolo Dondio, Jean Marc Seigneur

Books/Book Chapters

Abstract An increasing number of dynamic software evolution approaches is com- monly based on integrating or utilising new pieces of software. This requires reso- lution of issues such as ensuring awareness of newly available software pieces and selection of most appropriate software pieces to use. Other chapters in this book dis- cuss dynamic software evolution focusing primarily on awareness, integration and utilisation of new software pieces, paying less attention on how selection among different software pieces is made. The selection issue is quite important since in the increasingly dynamic software world quite a few new software pieces occur over time, …

Establishing A Foundation For Automated Human Credibility Screening, Jay F. Nunamaker Jr., Judee K. Burgoon, Nathan W. Twyman, Jeffrey Gainer Proudfoot, Ryan M. Schuetzler, Justin Scott Giboney

Information Systems and Quantitative Analysis Faculty Proceedings & Presentations

Automated human credibility screening is an emerging research area that has potential for high impact in fields as diverse as homeland security and accounting fraud detection. Systems that conduct interviews and make credibility judgments can provide objectivity, improved accuracy, and greater reliability to credibility assessment practices, need to be built. This study establishes a foundation for developing automated systems for human credibility screening.

Countermeasures And Eye Tracking Deception Detection, Ryan M. Schuetzler

Information Systems and Quantitative Analysis Faculty Proceedings & Presentations

A new development in the field of deception detection is been the development of rapid, noncontact tools for automated detection. This research in progress paper describes a method for assessing the robustness of eye tracker-based deception detection to countermeasures employed by knowledgeable participants.

Factors Affecting Information And Communications Technology Adoption Of Small Businesses: Studies In China And United States, Jie Xiong, Sajda Qureshi

Information Systems and Quantitative Analysis Faculty Proceedings & Presentations

Small businesses in China and United States generate the largest share of economic activity and employment. As the driving force behind the economic growth of both countries, Information and Communications Technology (ICTs) has fundamentally shaped the two countries. This research-in-progress paper reports the research model we conduct to analyze the factors that will affect ICTs adoption of small businesses in both countries. The purpose of the paper is to (1) report proposals of the current status of the research project (2) build an understanding of ICTs adoption in both countries (3) build the framework to explore the relationship between ICTs …

Extracting Diverse Sentiment Expressions With Target-Dependent Polarity From Twitter, Lu Chen, Wenbo Wang, Meenakshi Nagarajan, Shaojun Wang, Amit P. Sheth

Kno.e.sis Publications

This study focuses on automatic extraction of sentiment expressions associated with given targets from Twitter. It addresses one of the key challenges in this work: Wide diversity and informal nature of sentiment expressions that cannot be trivially enumerated or captured using predefined lexical patterns.

On The Role Of Social Identity And Cohesion In Characterizing Online Social Communities, Hemant Purohit, Yiye Ruan, David Fuhry, Srinivasan Parthasarathy, Amit P. Sheth

Kno.e.sis Publications

Two prevailing theories for explaining social group or community structure are cohesion and identity. The social cohesion approach posits that social groups arise out of an aggregation of individuals that have mutual interpersonal attraction as they share common characteristics. These characteristics can range from common interests to kinship ties and from social values to ethnic backgrounds. In contrast, the social identity approach posits that an individual is likely to join a group based on an intrinsic self-evaluation at a cognitive or perceptual level. In other words group members typically share an awareness of a common category membership. In this work …

Role Of Semantic Web In Health Informatics, Satya S. Sahoo, Guo-Qiang Zhang, Amit P. Sheth

Kno.e.sis Publications

This tutorial weaves together three themes and the associated topics: [1] The role of biomedical ontologies [2] Key Semantic Web technologies with focus on Semantic provenance and integration [3] In-practice tools and real world use cases built to serve the needs of sleep medicine researchers, cardiologists involved in clinical practice, and work on vaccine development for human pathogens.

Autonomic Database Management: State Of The Art And Future Trends, Katarina Grolinger, Miriam Am Capretz

Electrical and Computer Engineering Publications

In recent years, Database Management Systems (DBMS) have increased significantly in size and complexity, increasing the extent to which database administration is a time-consuming and expensive task. Database Administrator (DBA) expenses have become a significant part of the total cost of ownership. This results in the need to develop Autonomous Database Management systems (ADBMS) that would manage themselves without human intervention. Accordingly, this paper evaluates the current state of autonomous database systems and identifies gaps and challenges in the achievement of fully autonomic databases. In addition to highlighting technical challenges and gaps, we identify one human factor, gaining the trust …

Ontology–Based Representation Of Simulation Models, Katarina Grolinger, Miriam A.M. Capretz, José R. Marti, Krishan D. Srivastava

Electrical and Computer Engineering Publications

Ontologies have been used in a variety of domains for multiple purposes such as establishing common terminology, organizing domain knowledge and describing domain in a machine-readable form. Moreover, ontologies are the foundation of the Semantic Web and often semantic integration is achieved using ontology. Even though simulation demonstrates a number of similar characteristics to Semantic Web or semantic integration, including heterogeneity in the simulation domain, representation and semantics, the application of ontology in the simulation domain is still in its infancy. This paper proposes an ontology-based representation of simulation models. The goal of this research is to facilitate comparison among …

An Iterative Association Rule Mining Framework To K-Anonymize A Dataset, Michael Hayes, Miriam A M Capretz, Jefferey Reed, Cheryl Forchuk

Electrical and Computer Engineering Publications

Preserving and maintaining client privacy and anonymity is of utmost importance in any domain and specially so in healthcare, as loss of either of these can result in legal and ethical implications. Further, it is sometimes important to extract meaningful and useful information from existing data for research or management purposes. In this case it is necessary for the organization who manages the dataset to be certain that no attributes can identify individuals or group of individuals. This paper proposes an extendable and generalized framework to anonymize a dataset using an iterative association rule mining approach. The proposed framework also …

The Information Technology Workforce: A Comparision Of Critical Skills Of Clients And Service Providers, Stephen Hawk, Kate M. Kaiser, Tim Goles, Christine V. Bullen

Business Faculty Publications

In this article the authors explore similarities and differences in skill needs of IT service providers and the firms that providers service (clients). The results show that providers and clients are more similar than different with regard to desired skills. Client firms emphasize technical skills for new hires more than providers do despite saying that these are the skills they would outsource to providers. The results have implications for organizations’ recruiting and retention, for individuals’ career development, and for educational programs.

Semantics And Ontologies For Earthcube, Gary Berg-Cross, Isabel F. Cruz, Michael Dean, Timothy Finin, Mark Gahegan, Pascal Hitzler, Hook Hau, Krzysztof Janowicz, Naicong Li, Philip Murphy, Bryce Nordgren, Leo Obrst, Mark Schildhauer, Amit P. Sheth, Krishna Sinha, Anne Thessen, Nancy Wiegand, Ilya Zaslavasky

Kno.e.sis Publications

Semantic technologies and ontologies play an increasing role in scientific workflow systems and knowledge infrastructures. While ontologies are mostly used for the semantic annotation of metadata, semantic technologies enable searching metadata catalogs beyond simple keywords, with some early evidence of semantics used for data translation. However, the next generation of distributed and interdisciplinary knowledge infrastructures will require capabilities beyond simple subsumption reasoning over subclass relations. In this work, we report from the EarthCube Semantics Community by highlighting which role semantics and ontologies should play in the EarthCube knowledge infrastructure. We target the interested domain scientist and, thus, introduce the value …

Key Ingredients For Your Next Semantics Elevator Talk, Krzysztof Janowicz, Pascal Hitzler

Computer Science and Engineering Faculty Publications

2012 brought a major change to the semantics research community. Discussions on the use and benefits of semantic technologies are shifting away from the why to the how. Surprisingly this more in stakeholder interest is not accompanied by a more detailed understanding of what semantics research is about. Instead of blaming others for their (wrong) expectations, we need to learn how to emphasize the paradigm shift proposed by semantics research while abstracting from technical details and advocate the added value in a way that relates to the immediate needs of individual stakeholders without overselling. This paper highlights some of …

A Systematic Method For Discovering Effective Patterns Of Virtual Project Management, Deepak Khazanchi, Ilze Zigurs

Information Systems and Quantitative Analysis Faculty Publications

The effective management of virtual projects within global organizations is an inherently collaborative activity as well as an increasingly critical issue. The concept of patterns provides a useful theoretical framework by which we can study the design of effective practices for the management of virtual projects. However, a number of significant gaps exist in our knowledge of this area and one of the most important is the need for a systematic method for discovering effective patterns. We propose such a systematic method and provide a detailed example of the use of our proposed pattern discovery method.

Open And Transparent: The Review Process Of The Semantic Web Journal, Krzysztof Janowicz, Pascal Hitzler

Computer Science and Engineering Faculty Publications

While open access is established in the world of academic publishing, open reviews are rare. The Semantic Web journal goes further than just open review by implementing an open and transparent review process in which reviews are publicly available, and the assigned editors and reviewers are known by name, and are published together with accepted manuscripts. In this article we introduce the steps to realize such a process from the conceptual design, over the implementation, a overview of the results so far, and up to lessons learned.

An Approach To The Virtual Flora Of Mongolia – From A Data Repository To An Expert System, Http://Greif.Uni-Greifswald.De/Floragreif/, Jörg Hartleib, Martin Schnittler, Sabrina Rilke, Anne Zemmrich, Bernd Bobertz, Ulrike Najmi, Reinhard Zölitz, Susanne Starke

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

FloraGREIF is an internet accessible information system providing taxonomic, phytogeographic and ecological information on Mongolia’s flora in terms of descriptions, high-resolution plant images and an interactive WebGIS application. Organised along an updated checklist of the approx. 3000 Mongolian vascular plants that serves as a taxonomic backbone, information is split into the taxon level, referring to plant species, and the record level, referring to record or a collected plant specimen. At the latter level, images of living plants, scans of herbarium sheets, habitat photos and further notes can be found. Both data levels are linked by the name of the respective …

Analysis And Synthesis Of Metadata Goals For Scientific Data, Craig Willis, Jane Greenberg, Hollie C. White

Faculty Scholarship

The proliferation of discipline-specific metadata schemes contributes to artificial barriers that can impede interdisciplinary and transdisciplinary research. The authors considered this problem by examining the domains, objectives, and architectures of nine metadata schemes used to document scientific data in the physical, life, and social sciences. They used a mixed-methods content analysis and Greenberg’s (2005) metadata objectives, principles, domains, and architectural layout (MODAL) framework, and derived 22 metadata-related goals from textual content describing each metadata scheme. Relationships are identified between the domains (e.g., scientific discipline and type of data) and the categories of scheme objectives. For each strong correlation …

The Ontology For Parasite Lifecycle (Opl): Towards A Consistent Vocabulary Of Lifecycle Stages In Parasitic Organisms, Priti Parikh, Jie Zheng, Flora J. Logan-Klumpler, Christian J. Stoeckert, Pantelis Topalis, Anna Protasio, Amit P. Sheth, Mark Carrington, Matthew Berriman, Satya S. Sahoo

Kno.e.sis Publications

Background

Genome sequencing of many eukaryotic pathogens and the volume of data available on public resources have created a clear requirement for a consistent vocabulary to describe the range of developmental forms of parasites. Consistent labeling of experimental data and external data, in databases and the literature, is essential for integration, cross database comparison, and knowledge discovery. The primary objective of this work was to develop a dynamic and controlled vocabulary that can be used for various parasites. The paper describes the Ontology for Parasite Lifecycle (OPL) and discusses its application in parasite research.

Results

The OPL is based on …

Ancillary Service Capacity Optimization For Both Electric Power Suppliers And Independent System Operator, Lijian Chen, Dengfeng Sun, Guang Li

MIS/OM/DS Faculty Publications

Ancillary Services (AS) in electric power industry are critical to support the transmission of energy from generators to load demands while maintaining reliable operation of transmission systems in accordance with good utility practice. The ancillary services are procured by the independent system operator (ISO) through a process called the market clearing process which can be modeled by the partial equilibrium from the ends of ISO. There are two capacity optimization problems for both Market participants (MP) and Independent System Operator (ISO). For a market participant, the firm needs to determine the capacity allocation plan for various AS to pursue operating …

Irish Cios’ Influence On Technology Innovation And It-Business Alignment, Harvey Enns, Joseph J. Mcdonagh

MIS/OM/DS Faculty Publications

Technology is the driving force behind many of today’s new products, services, and cost-cutting measures. However, there are gaps in our understanding about how technological innovation is fostered and nurtured in organizations.

Part of the answer is to examine how Chief Information Officers (CIOs) exercise influence regarding technological innovation in organizations. This is particularly important since the CIO is the head of technology in organizations, an important source of technological innovation. This article draws on an established executive influence framework to demonstrate how Irish CIOs are able to solidify Information Technology’s (IT’s) contribution to technological innovation via relational means. Most …