Computer Sciences Commons^™

Knowing When Not To Answer: Positional Peptide Sequencing With Encoder-Decoder Networks, Korrawe Karunratanakul

Chulalongkorn University Theses and Dissertations (Chula ETD)

การถอดรหัสเปปไทด์นั้นเป็นองค์ประกอบสำคัญสำหรับการศึกษาโปรตีน โดยทั่วไปแล้วการวิเคราะห์ข้อมูล mass spectrum นั้นจะศึกษาเพียงสายของกรดอะมิโนที่ปรากฏอยู่ในฐานข้อมูลเท่านั้น ทำให้การค้นหาสายเปปไทด์แบบใหม่ที่อาจเกิดจากการกลายพันธุ์นั้นทำได้ยาก วิถีการถอดรหัสด้วยดีโนโวแก้ไขข้อจำกัดนี้ด้วยการถอดรหัสสายเปปไทด์โดยตรงจากข้อมูล mass spectrum โดยใช้ความรู้เกี่ยวกับกระบวนการแตกตัวของไอออน ทำให้ไม่จำเป็นต้องใช้ฐานข้อมูลโปรตีนช่วย อย่างไรก็ดี วิธีดังกล่าวยังมีข้อจำกัดด้านความแม่นยำและต้องการการตรวจทานโดยผู้เชี่ยวชาญ วิทยานิพนธ์ฉบับนี้นำเสนอวิธีการถอดรหัสเปปไทด์ด้วยวิธีการดีโนโวแบบใหม่ชื่อ SMSNet โดยใช้โมเดล deep learning เข้าช่วย โดยยังสามารถทำนายกรดอะมิโนได้อย่างครอบคลุมในระดับความแม่นยำของกรดอะมิโนที่ 95% งานฉบับนี้เสนอขั้นตอน ถอดรหัส ตัดออก และสืบค้น เพื่อตัดผลทำนายในตำแหน่งที่มีความกำกวมออกและใช้ข้อมูลจากฐานข้อมูลโปรตีนช่วยเพื่อให้ทำนายสายเปปไทด์ได้ถูกต้องทั้งเส้น นอกจากนี้ งานนี้ได้นำเสนอการใช้ rescorer ในการแก้ไขคะแนนความมั่นใจสำหรับผลทำนายในแต่ละตำแหน่ง ซึ่งส่งผลให้สามารถแยกกลุ่มคะแนนความมั่นใจสำหรับคำตอบที่ถูกต้องและคำตอบที่ผิดได้ดียิ่งขึ้น เมื่อประกอบทุกขั้นตอนวิธีในงานวิจัยฉบับนี้เข้าด้วยกันพบว่า SMSNet สามารถทำนายสายเปปไทด์ได้ในประสิทธิภาพที่ใกล้เคียงกับการทำนายด้วยฐานข้อมูลในการทดลองจริง

Extraction Of Patterns In Selected Network Traffic For A Precise And Efficient Intrusion Detection Approach, Priya Naran Rabadia

Theses: Doctorates and Masters

This thesis investigates a precise and efficient pattern-based intrusion detection approach by extracting patterns from sequential adversarial commands. As organisations are further placing assets within the cyber domain, mitigating the potential exposure of these assets is becoming increasingly imperative. Machine learning is the application of learning algorithms to extract knowledge from data to determine patterns between data points and make predictions. Machine learning algorithms have been used to extract patterns from sequences of commands to precisely and efficiently detect adversaries using the Secure Shell (SSH) protocol. Seeing as SSH is one of the most predominant methods of accessing systems it …

Next Generation Wireless Communication Networks: Energy And Quality Of Service Considerations, Md Munjure Mowla

Theses: Doctorates and Masters

The rapid growth in global mobile phone users has resulted in an ever-increasing demand for bandwidth and enhanced quality-of-service (QoS). Several consortia comprising major international mobile operators, infrastructure manufacturers, and academic institutions are working to develop the next generation wireless communication systems fifth generation (5G) - to support high data rates and increased QoS. 5G systems are also expected to represent a greener alternative for communication systems, which is important because power consumption from the information and communication technology (ICT) sector is forecast to increase significantly by 2030. The deployment of ultra-dense heterogeneous small cell networks (SCNs) is expected to …

Review Of Deep Learning Methods In Robotic Grasp Detection, Shehan Caldera, Alexander Rassau, Douglas Chai

Research outputs 2014 to 2021

For robots to attain more general-purpose utility, grasping is a necessary skill to master. Such general-purpose robots may use their perception abilities to visually identify grasps for a given object. A grasp describes how a robotic end-effector can be arranged to securely grab an object and successfully lift it without slippage. Traditionally, grasp detection requires expert human knowledge to analytically form the task-specific algorithm, but this is an arduous and time-consuming approach. During the last five years, deep learning methods have enabled significant advancements in robotic vision, natural language processing, and automated driving applications. The successful results of these methods …

An Autonomous Intelligent Robotic Wheelchair To Assist People In Need: Standing-Up, Turning-Around And Sitting-Down, Iosif Papadakis Ktistakis

Browse all Theses and Dissertations

The world’s ageing population has significantly increased over the last decades, which will result in one of the most significant transformations of the twenty-first century. As people age, they become more vulnerable to diseases and their health may need constant monitoring. At the same time, the number of people who have some kind of disability is also increasing. These people with disabilities may need daily assistance and monitoring of their health condition that is provided by specialists (health providers) at a high cost. A possible solution to the aforementioned problem comes from the assistive and intelligent robotics research area. The …

Interactive Visualization Of Search Results Of Large Document Sets, James D. Anderson

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When presented with many search results, finding information or patterns within the data poses a challenge. This thesis presents the design, implementation and evaluation of a visualization enabling users to browse through voluminous information and comprehend the data. Implemented with the JavaScript library Data Driven Documents (D3), the visualization represents the search as clusters of similar documents grouped into bubbles with the contents depicted as word-clouds. Highly interactive features such as touch gestures and intuitive menu actions allow for expeditious exploration of the search results. Other features include drag-and-drop functionality for articles among bubbles, merging nodes, and refining the search …

Overwhelming The Saa System Of Delivery Uavs By Drone Swarming, Barry Lynn Pfaff

Browse all Theses and Dissertations

As the Internet continues to replace the brick-and-mortar store as the main place for purchasing goods, web-based companies are looking for ways to reduce the cost of delivering those goods. The use of Unmanned Aerial Vehicles, or UAVs, is one delivery method that is increasingly being used. These UAVs can be programmed with delivery routes and destinations and can complete the job while requiring limited intervention from human controllers. Sense and Avoidance (SAA) systems have recently been incorporated into these UAVs so that they can detect objects in their flight path, reroute the UAV accordingly and operate even more autonomously. …

Fully Transparent Computer Vision Framework For Ship Detection And Tracking In Satellite Imagery, Jason T. Gottweis

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Tracking of ships in satellite imagery is a challenging problem in remote sensing since it requires both object detection and object recognition. Most of the resources available only cover one of these problems and are often filled with machine learning techniques which are costly to train. Additionally, the techniques covered in these resources are often difficult to replicate or may be hard to combine with other solutions to get a full tracking algorithm. The proposed framework offers a transparent and efficient alternative to machine learning approaches and includes preprocessing, detection, and recognition needed for tracking. All components of the framework …

Augment The Multi-Modal Interaction Capabilities Of Hololens Through Networked Sensory Devices, Subhadra Tummalapally

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Augmented Reality (AR) places virtual contents along with real objects to enhance user perception in the physical environment. It is a technology that has shown great potential in many industries such as medicine, education and transportation. AR devices, such as Microsoft HoloLens, come with multi-modal interaction capabilities, such as voice, gesture and gaze, to support intuitive and reliable human-computer interactions. However, HoloLens gesture support is limited to simple gestures like tap, bloom and hold, it stops short to support meaningful interaction through full hand gesture and motion tracking, which may be critical in field operations of various industry practices in …

Mobile Cloud Computing: A Comparison Study Of Cuckoo And Aiolos Offloading Frameworks, Inan Kaddour

UNF Graduate Theses and Dissertations

Currently, smart mobile devices are used for more than just calling and texting. They can run complex applications such as GPS, antivirus, and photo editor applications. Smart devices today offer mobility, flexibility, and portability, but they have limited resources and a relatively weak battery. As companies began creating mobile resource intensive and power intensive applications, they have realized that cloud computing was one of the solutions that they could utilize to overcome smart device constraints. Cloud computing helps decrease memory usage and improve battery life. Mobile cloud computing is a current and expanding research area focusing on methods that allow …

Collaborative Fall Detection Using Smartphone And Kinect, Xue Li, Lanshun Nie, Hanchuan Xu, Xianzhi Wang

Research Collection School Of Computing and Information Systems

Humanfall detection has attracted broad attentions as sensors and mobile devices are increasingly adopted in real-life scenarios such as smart homes. The complexity of activities in home environments pose severe challenges to the fall detection research with respect to the detection accuracy. We propose a collaborative detection platform that combines two subsystems: a threshold-based fall detection subsystem using mobile phones and a support vector machine (SVM)-based fall detection subsystem using Kinects. Both subsystems have their respective confidence models and the platform detects falls by fusing the data of both subsystems using two methods: the logical rules-based and D-S evidence fusion …

A Twitter-Based Study For Understanding Public Reaction On Zika Virus, Roopteja Muppalla

Browse all Theses and Dissertations

In recent times, social media platforms like Twitter have become more popular and people have become more interactive and responsive than before. People often react to every news in real-time and within no-time, the information spreads rapidly. Even with viral diseases like Zika, people tend to share their opinions and concerns on social media. This can be leveraged by the health officials to track the disease in real-time thereby reducing the time lag due to traditional surveys. A faster and accurate detection of the disease can allow health officials to understand people's opinion of the disease and take necessary precautions …

A Model For Seasonal Dynamic Networks, Jace D. Robinson

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Sociotechnological and geospatial processes exhibit time varying structure that make insight discovery challenging. This paper presents statistical model of systems with seasonal dynamics, modeled as a dynamic network, to address this challenge. It assumes the probability of edge formations depend on a type assigned to incident nodes and the current time. Time dependencies are modeled by unique seasonal processes. The model is studied on several synthetic and real datasets. Superior fidelity of this model on seasonal datasets compared to existing network models, while being able to remain equally accurate for networks with randomly changing structure, is shown. The model is …

Virtual Doctor: An Intelligent Human-Computer Dialogue System For Quick Response To People In Need, Stavros Mallios

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One of the challenges of our society is the existence of chronic-related conditions and diseases among the elderly and people at risk. Apart from the welfare of people, a significant impact of this phenomenon is the accumulation of high financial costs for both individuals and health care systems. In order to address this issue and to reduce its effects, many efforts have been made towards preventing, identifying in early stages and, generally, managing chronic-related medical conditions and diseases. As a result, there has been a keen research and market interest in health monitoring devices during the past few decades. Nevertheless, …

A Multi-Formal Languages Collaborative Scheme For Complex Human Activity Recognition And Behavioral Patterns Extraction, Anargyros Angeleas

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Human Activity Recognition is an actively researched domain for the past few decades, and is one of the most eminent applications of today. It is already part of our life, but due to high level of uncertainty and challenges of human detection, we have only application specific solutions. Thus, the problem being very demanding and still remains unsolved. Within this PhD we delve into the problem, and approach it from a variety of viewpoints. At start, we present and evaluate different architectures and frameworks for activity recognition. Henceforward, the focal point of our attention is automatic human activity recognition. We …

Use Of Adaptive Mobile Applications To Improve Mindfulness, Wiehan Boshoff

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Mindfulness is the state of retaining awareness of what is happening at the current point in time. It has been used in multiple forms to reduce stress, anxiety, and even depression. Promoting Mindfulness can be done in various ways, but current research shows a trend towards preferential usage of breathing exercises over other methods to reach a mindful state. Studies have showcased that breathing can be used as a tool to promote brain control, specifically in the auditory cortex region. Research pertaining to disorders such as Tinnitus, the phantom awareness of sound, could potentially benefit from using these brain control …

Domain-Specific Knowledge Extraction From The Web Of Data, Sarasi Lalithsena

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Domain knowledge plays a significant role in powering a number of intelligent applications such as entity recommendation, question answering, data analytics, and knowledge discovery. Recent advances in Artificial Intelligence and Semantic Web communities have contributed to the representation and creation of this domain knowledge in a machine-readable form. This has resulted in a large collection of structured datasets on the Web which is commonly referred to as the Web of data. The Web of data continues to grow rapidly since its inception, which poses a number of challenges in developing intelligent applications that can benefit from its use. Majority of …

Sensor Data Streams Correlation Platform For Asthma Management, Vaikunth Sridharan

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Asthma is a high-burden chronic inflammatory disease with prevalence in children with twice the rate compared to adults. It can be improved by continuously monitoring patients and their environment using the Internet of Things (IoT) based devices. These sensor data streams so obtained are essential to comprehend multiple factors triggering asthma symptoms. In order to support physicians in exploring causal associations and finding actionable insights, a visualization system with a scalable cloud infrastructure that can process multimodal sensor data and Patient Generated Health Data (PGHD) is necessary. In this thesis, we describe a cloud-based asthma management and visualization platform that …

Measuring Goal Similarity Using Concept, Context And Task Features, Vahid Eyorokon

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Goals can be described as the user's desired state of the agent and the world and are satisfied when the agent and the world are altered in such a way that the present state matches the desired state. For physical agents, they must act in the world to alter it in a series of individual atomic actions. Traditionally, agents use planning to create a chain of actions each of which altering the current world state and yielding a new one until the final action yields the desired goal state. Once this goal state has been achieved, the goal is said …

Image Stitching And Matching Tool In The Automated Iterative Reverse Engineer (Aire) Integrated Circuit Analysis Suite, David C. Bowman

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Due to current market forces, leading-edge semiconductor fabrication plants have moved outside of the US. While this is not a problem at first glance, when it comes to security-sensitive applications, over-production, device cloning, or design alteration becomes a possibility. Since these vulnerabilities exist during the fabrication phase, a Reverse Engineering (RE) step must be introduced to help ensure secure device operation. This thesis proposes several unique methods and a collection of tools to ensure trust assurance in integrated circuit design by detecting fabrication flaws and possible hardware Trojans using several image processing techniques; fused into a singular view of the …

The Feasibility Of Dementia Caregiver Task Performance Measurement Using Smart Gaming Technology, Garrett G. Goodman

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Dementia caregiver burnout is detrimental to both the familial caregiver and their loved ones with dementia. As the population of older adults increases, both the number of individuals with dementia and their corresponding caregivers increase as well. Thus, we are interested in developing a potential tool to non-invasively detect signs of caregiver burnout using a mobile application combined with machine learning. Hence, the mobile application "Caregiver Assessment using Smart Technology" (CAST) was developed which personalizes a word scramble game. The CAST application utilizes a heuristically constructed Fuzzy Inference System (FIS) optimized via a Genetic Algorithm (GA) to provide an individualized …

Development Of A Human-Ai Teaming Based Mobile Language Learning Solution For Dual Language Learners In Early And Special Educations, Saurabh Shukla

Browse all Theses and Dissertations

Learning English as a secondary language is often an overwhelming challenge for dual language learners (DLLs), whose first language (L1) is not English, especially for children in early education (PreK-3 age group). These early DLLs need to devote a considerable amount of time learning to speak and read the language, in order to gain the language proficiency to function and compete in the classroom. Fear of embarrassment when mispronouncing words in front of others may drive them to remain silent; effectively hampering their participation in the class and overall curricular growth. The process of learning a new language can benefit …

Multiple Drone Detection And Acoustic Scene Classification With Deep Learning, Hari Charan Vemula

Browse all Theses and Dissertations

Classification of environmental scenes and detection of events in one's environment from audio signals enables one to create better-planning agents, intelligent navigation systems, pattern recognition systems, and audio surveillance systems. This thesis will explore the use of Convolutional Neural Networks(CNN'S) with spectrograms and raw audio waveforms as inputs to Deep Neural Networks with hand engineered features extracted from large-scale feature extraction schemes to identify the acoustic scenes and events. The first part focuses on building an audio pattern recognition system capable of detecting the if there are zero, one, or two DJI phantoms in the scene within the range of …

A Framework To Understand Emoji Meaning: Similarity And Sense Disambiguation Of Emoji Using Emojinet, Sanjaya Wijeratne

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Pictographs, commonly referred to as `emoji’, have become a popular way to enhance electronic communications. They are an important component of the language used in social media. With their introduction in the late 1990’s, emoji have been widely used to enhance the sentiment, emotion, and sarcasm expressed in social media messages. They are equally popular across many social media sites including Facebook, Instagram, and Twitter. In 2015, Instagram reported that nearly half of the photo comments posted on Instagram contain emoji, and in the same year, Twitter reported that the `face with tears of joy’ emoji has been tweeted 6.6 …

Developing A Kinect Based Holoportation System, Soumya Chiday

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Holographic communication and distributed collaboration offer great potential for empathic computing to help remove the cost, distance, language and expertise barriers in many social and economic activities. Recent advances in AR-enhanced communication as evident by Microsoft Holoportation technology demonstrate the progress toward fully immersive collaborations distributed and remotely. Current holoportation system requires the use of extensive camera-arrays and powerful server system due to the computation demand and sensory needs to capture and reconstruct the subject of interests Thus, they suffer in mobility and applicability in real-world scenarios. In this thesis, we present an ultra-portable holoportation system design that requires only …

Using Natural Language Processing And Machine Learning For Analyzing Clinical Notes In Sickle Cell Disease Patients, Shufa Khizra

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Sickle Cell Disease (SCD) is a hereditary disorder in red blood cells that can lead to excruciating pain episodes. SCD causes the normal red blood cells to distort its shape and turn into sickle shape. The distorted shape makes the hemoglobin inflexible and stick to the walls of the vessels thereby obstructing the free flow of blood and eventually making the tissues suffer from lack of oxygen. The lack of oxygen causes serious problems including Acute Chest Syndrome (ACS), stroke, infection, organ damage, and over the lifetime an SCD can harm a persons spleen, brain, kidneys, eyes, bones. Sickling of …

Authenticating Users With 3d Passwords Captured By Motion Sensors, Jing Tian

Theses and Dissertations

Authentication plays a key role in securing various resources including corporate facilities or electronic assets. As the most used authentication scheme, knowledgebased authentication is easy to use but its security is bounded by how much a user can remember. Biometrics-based authentication requires no memorization but ‘resetting’ a biometric password may not always be possible. Thus, we propose study several behavioral biometrics (i.e., mid-air gestures) for authentication which does not have the same privacy or availability concerns as of physiological biometrics.

In this dissertation, we first propose a user-friendly authentication system Kin- Write that allows users to choose arbitrary, short and …

Development Of A Locomotion And Balancing Strategy For Humanoid Robots, Emile Bahdi

Electronic Theses and Dissertations

The locomotion ability and high mobility are the most distinguished features of humanoid robots. Due to the non-linear dynamics of walking, developing and controlling the locomotion of humanoid robots is a challenging task. In this thesis, we study and develop a walking engine for the humanoid robot, NAO, which is the official robotic platform used in the RoboCup Spl. Aldebaran Robotics, the manufacturing company of NAO provides a walking module that has disadvantages, such as being a black box that does not provide control of the gait as well as the robot walk with a bent knee. The latter disadvantage, …

Average Modeling And Evaluation Of 18-Pulse Autotransformer Rectifier Unit Without Interphase Transformers, Shahbaz Khan, Xiaobin Zhang, Husan Ali, Haider Zaman, Muhammad Saad, Bakht Muhammad Khan

Turkish Journal of Electrical Engineering and Computer Sciences

This paper presents an improved average model and evaluation of an 18-pulse autotransformer rectifier unit (ATRU) in differential delta configuration. Average models remove the switching behavior of diode rectifiers and high bandwidth transients, which not only facilitates simulation of power systems by reducing computational cost but also enables impedance-based stability analysis for large complex power systems. To experimentally validate the proposed average model, a 2-kW, 18-pulse ATRU has been tested and the results of the derived model are compared with those of the switching model and experimental prototype. Computed transfer function of load impedance from the proposed average model closely …

A Novel Multistage System For The Detection And Removal Of Pectoral Muscles Inmammograms, İdi̇l Işikli Esener, Semi̇h Ergi̇n, Tolga Yüksel

Turkish Journal of Electrical Engineering and Computer Sciences

In this paper, a novel multistage scheme for pectoral muscle removal from mammography images is proposed, and the performance of this system is verified using the publicly available Mammographic Image Analysis Society digital mammogram database. This database is composed of mediolateral oblique mammography images including three different tissue types (fatty, fatty-glandular, and dense-glandular) with three health status types (normal, benign cancer, and malignant cancer). In the implementation of the proposed system, a mammography image is first preprocessed by performing noise reduction background removal followed by artifact suppression processes. Then a presegmentation procedure is applied using region growing and line fitting …