Computer Sciences Commons^™

Discovery Of Photosynthetic Oxic N2-Fixation In Cyanobacteria Using Wet Lab And Machine Learning Approaches, James A. Young Iii

Electronic Theses and Dissertations

No abstract provided.

Harnessing The Power Of Gradient-Based Simulations For Multi-Objective Optimization In Particle Accelerators, Kishansingh Rajput, Malachi Schram, Auralee Edelen, Jonathan Colen, Armen Kasparian, Ryan Roussel, Adam Carpenter, He Zhang, Jay Benesch

Data Science Faculty Publications

Particle accelerator operation requires simultaneous optimization of multiple objectives. Multi-objective optimization (MOO) is particularly challenging due to trade-offs between the objectives. Evolutionary algorithms, such as genetic algorithms (GAs), have been leveraged for many optimization problems, however, they do not apply to complex control problems by design. This paper demonstrates the power of differentiability for solving MOO problems in particle accelerators using a deep differentiable reinforcement learning (DDRL) algorithm. We compare the DDRL algorithm with model-free reinforcement learning (MFRL), GA, and Bayesian optimization (BO) for simultaneous optimization of heat load and trip rates in the continuous electron beam accelerator facility. The …

Fares On Fairness: Using A Total Error Framework To Examine The Role Of Measurement And Representation In Training Data On Model Fairness And Bias, Patrick Oliver Schenk, Christoph Kern, Trent D. Buskirk

Data Science Faculty Publications

Data-driven decisions, often based on predictions from machine learning (ML) models are becoming ubiquitous. For these decisions to be just, the underlying ML models must be fair, i.e., work equally well for all parts of the population such as groups defined by gender or age. What are the logical next steps if, however, a trained model is accurate but not fair? How can we guide the whole data pipeline such that we avoid training unfair models based on inadequate data, recognizing possible sources of unfairness early on? How can the concepts of data-based sources of unfairness that exist in the …

Privshap: A Finer-Granularity Network Linearization Method For Private Inference, Xiangrui Xu, Zhenzhen Wang, Rui Ning, Chunsheng Xiu, Hongyi Wu

Computer Science Faculty Publications

Private inference applies cryptographic techniques like homomorphic encryption, garble circuit and secret sharing to keep both sides privacy in a client-server setting during inference. It is often hindered by the high communication overheads, especially at non-linear activation layers such as ReLU. Hence ReLU pruning has been widely recognized as an efficient way to accelerate private inference. Existing approaches to ReLU pruning typically rely on coarse hypothesis, which assume an inverse correlation between the importance of ReLU and linear layers or shallow activation layers have less importance for universal models, to assign the budgets according to the layer while preserving the …

Prompt-Based Learning For Few-Shot Class-Incremental Learning, Jicheng Yuan, Hang Chen, Songsong Tian, Wenfa Li, Lusi Li, Enhao Ning, Yugui Zhang

Computer Science Faculty Publications

Few-Shot Class-Incremental Learning (FSCIL) aims to enable deep neural networks to incrementally learn new tasks from a limited number of labeled samples, while retaining knowledge of previously learned tasks, mimicking the way humans learn. In this paper, we introduce a novel approach called Prompt Learning for FSCIL (PL-FSCIL), which leverages the power of prompts alongside a pre-trained Vision Transformer (ViT) model to effectively tackle the challenges of FSCIL. Our approach explores the feasibility of directly applying visual prompts in FSCIL, using a simplified model architecture. PL-FSCIL integrates two key prompts: the Domain Prompt and the FSCIL Prompt. Both are tensors …

An Analytical Review Of Preprocessing Techniques In Bengali Natural Language Processing, Sovon Chakraborty, Protiva Das, Shakib Mahmud Dipto, Md Aktaruzzaman Pramanik, Jannatun Noor

Computer Science Faculty Publications

Research in Bengali Natural Language Processing (BNLP) is rapidly expanding. Despite being one of the most widely spoken languages in the world, BNLP research remains insufficient, particularly in Bengali speech recognition. The languages rich morphology, agglutinative structure, and diverse dialects make text and speech processing especially challenging. However, these challenges can be addressed with effective preprocessing techniques. Various organizations in Bangladesh and West Bengal are integrating Natural Language Processing (NLP) into their services, but without a thorough understanding of preprocessing, these implementations remain incomplete. Applying proper preprocessing techniques to the Bengali language will serve as a foundation for developing robust …

Can Llms Beat Humans On Discerning Human-Written And Llm-Generated Science News, Dominik Soós, Meng Jiang, Jian Wu

Computer Science Faculty Publications

Science news is increasingly important in connecting scientists and the public by sharing discoveries and innovations. With the rise of large language models (LLMs), there is potential to automate science news creation, but concerns exist about the quality of LLM-generated news versus human-written news. This paper explores whether LLMs can outperform humans in distinguishing between human-written and LLM-generated news. Inspired by the Chain-of-Thought prompting method, we designed a simple yet effective variant called Guided Few-shot (GFS), which encodes the characteristics of news of two types with examples. Our experiments indicated that GFS with just a single example effectively boosted the …

Deepssetracer 2.0: Improved Deep Learning Model Performance For Protein Secondary Structure Segmentation From Cryo-Em Maps, Bryan Hawickhorst, Thu Nguyen, Willy Wriggers, Jiangwen Sun, Jing He

Computer Science Faculty Publications

DeepSSETracer is a method for segmenting protein secondary structure from medium-resolution (5-10Å) cryogenic electron microscopy (cryo-EM) density maps. We conducted experiments and ablation studies to examine the effects of normalization methods, max-pooling, activation functions, and loss calculation region on DeepSSETracer. By combining multiple technical improvements, the performance of the new version, DeepSSETracer 2.0, was significantly enhanced compared to DeepSSETracer 1.1. On a set of 77 test cases, the weighted average per-voxel F1 score increased from 62.1% to 70.3% for helix detection, and from 47.8% to 62.5% for β-sheet detection. While each of the five modifications in the network enhanced the …

Benchmarking And Improving Foundation Model Dietary Estimates From Meal Images, Yongcheng Mu, Jiangwen Sun, Jing He

Computer Science Faculty Publications

Accurate quantifying dietary contents, such as calories, proteins, carbohydrates, and fats, from an image of a meal plate is vital for managing diabetes. Recently, Large Multimodal Models (LMMs) have excelled in complex vision-language tasks due to their use of very large, highly diverse data. This study benchmarked the use of seven LMMs that include full and lightweight models of GPT, Gemini, and Llama for nutrition estimation based on Google's Nutrition5k dataset and our own phone-collected DonateAndLearn dataset. We analyzed the performance of LMMs and the RGB-D fusion model, in which the RGB-D model was specifically trained using Nutrition5k data. On …

Understanding Pii Leakage In Large Language Models: A Systematic Survey, Shuai Cheng, Zhao Li, Shu Meng, Mengxia Ren, Haitao Xu, Shuai Hao, Chuan Yue, Fang Zhang

Computer Science Faculty Publications

Large Language Models (LLMs) have demonstrated exceptional success across a variety of tasks, particularly in natural language processing, leading to their growing integration into numerous facets of daily life. However, this widespread deployment has raised substantial privacy concerns, especially regarding personally identifiable information (PII), which can be directly associated with specific individuals. The leakage of such information presents significant real-world privacy threats. In this paper, we conduct a systematic investigation into existing research on PII leakage in LLMs, encompassing commonly utilized PII datasets, evaluation metrics, and current studies on both PII leakage attacks and defensive strategies. Finally, we identify unresolved …

Humans Vs. Llms On Open Domain Scientific Claim Verification: A Baseline Study, Benjamin Curtis, Stefania Dzhaman, Matthew Maisonave, Jian Wu

Computer Science Faculty Publications

Verifying scientific claims is challenging for the general public because most people lack domain knowledge. Manual verification by subject domain experts is accurate, but it is obviously not scalable to meet the rising number of scientific claims on the Web. Whether the emerging large language models and large reasoning models can be used for scientific claim verification, and how their performances compare to humans, are still research questions. To this end, we developed a new benchmark MSVEC2 that consists of 138 claims from credible fact verification websites and science news outlets. Two tasks were given to both human and LLM …

The Reliability Response To Patent Law’S Ai Challenges, Arti K. Rai

Faculty Scholarship

Pervasive AI use adds newfound importance to longstanding debates over patent timing and reliability. Patent claims on speculative ideas generated by AI, or even the infusion of speculative AI-generated ideas into the public domain, may defeat patent incentives for more careful research. Although challenges that AI use poses for patent validity requirements like human inventorship and nonobviousness have received more attention, reliability is equally important.

Indeed, as this Article argues, the issues are linked. If requirements for inventorship and nonobviousness were adjusted to emphasize reliability, a human role could be preserved, and AI use would not necessarily threaten patents. Currently, …

Large Scale Machine Learning Over Knowledge Graphs, Bedirhan Gergin

Electronic Theses & Dissertations (2024 - present)

Knowledge graphs (KGs) have become popular across various fields, providing convenient access to web-based knowledge while storing and formalizing domain-specific information. By analyzing KGs, patterns, connections, and dependencies can be identified across different data sources, enabling the inference of new knowledge from given facts. As the use of KGs expands, the size of modern KGs has grown significantly, making them impossible to process within the main memory of a single computer. Distributed computing offers a viable solution to this challenge by leveraging the combined capabilities of multiple servers within a cluster. This thesis explores how distributed computing can be effectively …

The Reliability Gap: How Traditional Search Engines Outperform Artificial Intelligence (Ai) Chatbots In Rosacea Public Health Information Quality, Houston C. Nelson, Morgan T. Beauchamp, April A. Pace

Department of Medicine Faculty Publications

Background: The internet has become a primary source of health information for the public, with important implications for patient decision-making and public health outcomes. However, the quality and readability of this content vary widely. With the rise of generative artificial intelligence (AI) tools such as ChatGPT and Gemini, new challenges and opportunities have emerged in how patients access and interpret medical information.

Objective: To evaluate and compare the quality, credibility, and readability of consumer health information provided by traditional search engines (Google, Bing) and generative AI platforms (ChatGPT, Gemini) using three validated instruments: DISCERN, JAMA Benchmark Criteria, and Flesch-Kincaid Readability …

Reinforcement Learning For Scheduling And Routing: Electric Vehicles Charging And Patrol Scheduling, Majid Ghasemi

Theses and Dissertations (Comprehensive)

This thesis offers a comprehensive exploration of Reinforcement Learning (RL), beginning with fundamental theoretical constructs, Markov Decision Processes, Dynamic Programming, Monte Carlo, and Temporal Difference methods, and extending into state-of-the-art deep RL approaches such as Deep Q-Networks (DQN) and policy-gradient algorithms. Through analytical experiments in controlled environments, the thesis demonstrates how distinct algorithmic choices (e.g., exploration techniques, eligibility traces, or network architectures) influence convergence and stability. These foundational insights pave the way for two in-depth case studies, which apply RL techniques to critical, real-world scheduling and routing challenges.

The first case study tackles the Electric Vehicle (EV) routing and charging …

Flexible Hybrid Self-Powered Piezo-Triboelectric Nanogenerator Based On Bto-Pvdf/Pdms Nanocomposites For Human Machine Interaction, Wentao Dong, Mengyun Li, Chang Chen, Kun Xie, Jinhua Hong, Lin Yang

Civil & Environmental Engineering Faculty Publications

As flexible and wearable electronics play more and more important role in smart watches, smart glass and virtual reality, and the power supply to the wearable electronics have been revealed more attentions for long-term usage and continuous healthy monitoring. To overcome the challenge, flexible self-powered BTO-PVDF/PDMS piezoelectric-triboelectric electric hybrid generators (BPP-HNG) are developed to human gesture monitoring and human machine interaction (HMI) application without external power supply. BPP-HNG based on BTO-PVDF and PDMS films are prepared by sol-gel and spin-coating method. When the BTO content is 20 wt.%, BPP-HNG exhibits better electrical performance with an output voltage of 20.51 V. …

Multi-Lingual And Cross-Domain Frontiers In Machine-Generated Content Detection, Gurunameh Singh Chhatwal

Theses and Dissertations (Comprehensive)

The rapid advancement of generative artificial intelligence, particularly Large Language Models (LLMs) such as GPT-4 and their multilingual capabilities, has significantly blurred the distinction between human-authored and machine-generated content. This technological evolution introduces critical challenges concerning the detection and attribution of textual authenticity and authorship, exacerbating societal issues like misinformation proliferation and compromising academic and professional integrity. Traditional detection methodologies, predominantly monolingual and heuristic-based, have demonstrated inadequate generalizability and efficacy against the sophisticated, multilingual capabilities of contemporary generative models.

This thesis addresses two major problems arising from these advancements. Firstly, it introduces novel multilingual detection methodologies explicitly designed to differentiate …

Energy-Aware Swarm Robotics In Smart Microgrids Using Quantum-Inspired Reinforcement Learning, Mohamed Shili, Salah Hammedi, Hicham Chaoui, Khaled Nouri

Electrical & Computer Engineering Faculty Publications

The integration of autonomous robots with intelligent electrical systems introduces complex energy management challenges, particularly as microgrids increasingly incorporate renewable energy sources and storage devices in widely distributed environments. This study proposes a quantum-inspired multi-agent reinforcement learning (QI-MARL) framework for energy-aware swarm coordination in smart microgrids. Each robot functions as an intelligent agent capable of performing multiple tasks within dynamic domestic and industrial environments while optimizing energy utilization. The quantum-inspired mechanism enhances adaptability by enabling probabilistic decision-making, allowing both robots and microgrid nodes to self-organize based on task demands, battery states, and real-time energy availability. Comparative experiments across 1500 grid-based …

Advances In Battery Modeling And Management Systems: A Comprehensive Review Of Techniques, Challenges, And Future Perspectives, Seyed Saeed Madani, Yasmin Shabeer, Ananthu Shibu Nair, Michael Fowler, Satyam Panchal, Carlos Ziebert, Hicham Chaoui, Shi Xue Dou, Khay See, Saad Mekhilef, Françios Allard

Electrical & Computer Engineering Faculty Publications

Energy storage systems (ESSs) and electric vehicle (EV) batteries depend on battery management systems (BMSs) for their longevity, safety, and effectiveness. Battery modeling is crucial to the operation of BMSs, as it enhances temperature control, fault detection, and state estimation, thereby maximizing efficiency and preventing malfunctions. This paper thoroughly examines the most recent advancements in battery and BMS modeling, including data-driven, thermal, and electrochemical methods. Advanced modeling approaches are explored, including physics-based models that incorporate mechanical stress and aging effects, as well as artificial intelligence (AI)-driven state estimation. New technologies that facilitate data-driven decision-making, real-time monitoring, and simplified systems include …

A New Deepfake Detection Method With No-Reference Image Quality Assessment To Resist Image Degradation, Jiajun Jiang, Wen-Chao Yang, Chung-Hao Chen, Timothy Young

Electrical & Computer Engineering Faculty Publications

Deepfake technology, which utilizes advanced AI models such as Generative Adversarial Networks (GANs), has led to the proliferation of highly convincing manipulated media, posing significant challenges for detection. Existing detection methods often struggle with the low-quality or compressed press, which is prevalent on social media platforms. This paper proposes a novel Deepfake detection framework that leverages No-Reference Image Quality Assessment (NRIQA) techniques, specifically, BRISQUE, NIQE, and PIQUE, to extract quality-related features from facial images. These features are then classified using a Support Vector Machine (SVM) with various kernel functions. We evaluate our method under both intra-dataset and cross-dataset settings. For …

Enhancing Cyber Situational Awareness Through Dynamic Adaptive Symbology: The Dass Framework, Nicholas Macrino, Sergio Pallas Enguita, Chung-Hao Chen

Electrical & Computer Engineering Faculty Publications

The static nature of traditional military symbology, such as MIL-STD-2525D, hinders effective real-time threat detection and response in modern cybersecurity operations. This research introduces the Dynamic Adaptive Symbol System (DASS), a novel framework enhancing cyber situational awareness in military and enterprise environments. The DASS addresses static symbology limitations by employing a modular Python 3.10 architecture that uses machine learning-driven threat detection to dynamically adapt symbol visualization based on threat severity and context. Empirical testing assessed the DASS against a MIL-STD-2525D baseline using active cybersecurity professionals. Results show that the DASS significantly improves threat identification rates by 30% and reduces response …

Ai-Based Steganography Method To Enhance The Information Security Of Hidden Messages In Digital Images, Nhi Do Ngoc Huynh, Jiajun Jiang, Chung-Hao Chen, Wen-Chao Yang

Electrical & Computer Engineering Faculty Publications

With the increasing sophistication of Artificial Intelligence (AI), traditional digital steganography methods face a growing risk of being detected and compromised. Adversarial attacks, in particular, pose a significant threat to the security and robustness of hidden information. To address these challenges, this paper proposes a novel AI-based steganography framework designed to enhance the security of concealed messages within digital images. Our approach introduces a multi-stage embedding process that utilizes a sequence of encoder models, including a base encoder, a residual encoder, and a dense encoder, to create a more complex and secure hiding environment. To further improve robustness, we integrate …

T3-Ciders: Fostering A Community Of Practice In Ci-And Data Enabled Cybersecurity Research Through A Train-The-Trainer Program, Wirawan Purwanto, Mohan Yang, Peng Jiang, Masha Sosonkina

Electrical & Computer Engineering Faculty Publications

We present a training program named T³-CIDERS, the Train- The-Trainer approach to fostering cyberinfrastructure (CI)- and Data-Enabled Research in CyberSecurity. T³-CIDERS is a train-the-trainer program for advanced cyberinfrastructure (CI) skills that is designed to be synergistic with research, teaching, and learning activities in cybersecurity and cyber-related disciplines. The participants, termed 'future trainers' (FTs), are trained in effective instructional design and CI hands-on materials from DeapSECURE, developed in a previous CyberTraining program. T³-CIDERS aims to enhance cybersecurity research and education through broader adoption of advanced CI techniques such as artificial intelligence, big data, parallel programming, and platforms like high-performance computing (HPC) …

Detecting Anomalous Srf Cavity Behavior With Unsupervised Learning, Hal Ferguson, Jiang Li, Adam Carpenter, Chris Tennant, Dillon Thomas, Dennis Turner

Electrical & Computer Engineering Faculty Publications

We present an unsupervised learning framework for detecting anomalous superconducting radio-frequency (SRF) cavity behavior at the Continuous Electron Beam Accelerator Facility (CEBAF), emphasizing its initial performance and effectiveness. Key to the system’s success was the development of data acquisition systems (DAQs) that capture fast-sampled, information-rich signals, essential for detecting transient effects. The approach involves creating daily cavity-specific models using principal component analysis to handle variations in rf signal behavior and mitigate performance degradation from data drift. This unsupervised method eliminates the need for expensive labeling by continuously updating models with recent data. Deployed and operational for 3 months before a …

Key Brain Region Identification In Obesity Prediction With Structural Mri And Probabilistic Uncertainty Aware Model, Walia Farzana, Megan A. Witherow, Ahmed Temtam, Liangsuo Ma, Melanie Bean, F. Gerry Moeller, K. M. Iftekharuddin

Electrical & Computer Engineering Faculty Publications

Objectives/Goals: Predictive performance alone may not determine a model’s clinical utility. Neurobiological changes in obesity alter brain structures, but traditional voxel-based morphometry is limited to group-level analysis. We propose a probabilistic model with uncertainty heatmaps to improve interpretability and personalized prediction. Methods/Study Population: The data for this study are sourced from the Human Connectome Project (HCP), with approval from the Washington University in St. Louis Institutional Review Board. We preprocessed raw T1-weighted structural MRI scans from 525 patients using an automated pipeline. The dataset is divided into training (357 cases), calibration (63 cases), and testing (105 cases). Our probabilistic model …

A Fast Framework For Generating Radioactive Mixture Spectra And Its Application To Remote High-Performance Mixture Identification, Chiman Kwan, Bulent Ayhan, Adam Stavola, Kazi Aminul Islam, Hongfang Zhang, Jiang Li

Electrical & Computer Engineering Faculty Publications

Remote detection of radioactive materials in mixtures using handheld or portal detectors remains a challenge because of factors such as low concentration, environmental interference, sensor noise, and other complications. This work introduces a fast framework for generating realistic mixture spectra. Moreover, we present mixture isotope identification using data generated by the fast framework. Researchers have examined a range of conventional and recent algorithms within the fields of machine learning and deep learning. An application to uranium enrichment-level prediction has been included. Extensive simulation experiments validated the efficacy of the proposed framework.

Data-Driven Gradient Optimization For Field Emission Management In A Superconducting Radio-Frequency Linac, S. Goldenberg, K. Ahammed, A. Carpenter, J. Li, R. Suleiman, C. Tennant

Electrical & Computer Engineering Faculty Publications

Field emission can cause significant problems in superconducting radio-frequency linear accelerators (linacs). When cavity gradients are pushed higher, radiation levels within the linacs may rise exponentially, causing degradation of many nearby systems. This research aims to utilize machine learning with uncertainty quantification to predict radiation levels at multiple locations throughout the linacs and ultimately optimize cavity gradients to reduce field emission-induced radiation while maintaining the total linac energy gain necessary for the experimental physics program. The optimized solutions show over 40% reductions for both neutron and gamma radiation from the standard operational settings.

Land Target Detection Algorithm In Remote Sensing Images Based On Deep Learning, Wenyi Hu, Xiaomeng Jiang, Jiawei Tian, Shitong Ye, Shan Liu

Electrical & Computer Engineering Faculty Publications

Remote sensing technology plays a crucial role across various sectors, such as meteorological monitoring, city planning, and natural resource exploration. A critical aspect of remote sensing image analysis is land target detection, which involves identifying and classifying land-based objects within satellite or aerial imagery. However, despite advancements in both traditional detection methods and deep-learning-based approaches, detecting land targets remains challenging, especially when dealing with small and rotated objects that are difficult to distinguish. To address these challenges, this study introduces an enhanced model, YOLOv5s-CACSD, which builds upon the YOLOv5s framework. Our model integrates the channel attention (CA) mechanism, CARAFE, and …

Detecting Sars-Cov-2 In Ct Scans Using Vision Transformer And Graph Neural Network, Kamorudeen Amuda, Almustapha Wakili, Tomilade Amoo, Lukman Agbetu, Qianlong Wang, Jinjuan Feng

Electrical & Computer Engineering Faculty Publications

The COVID-19 pandemic has presented significant challenges to global healthcare, bringing out the urgent need for reliable diagnostic tools. Computed Tomography (CT) scans have proven instrumental in detecting COVID-19-induced lung abnormalities. This study introduces Convolutional Neural Network, Graph Neural Network, and Vision Transformer (ViTGNN), an advanced hybrid model designed to enhance SARS-CoV-2 detection by combining Graph Neural Networks (GNNs) for feature extraction with Vision Transformers (ViTs) for classification. Using the strength of CNN and GNN to capture complex relational structures and the ViT capacity to classify global contexts, ViTGNN achieves a comprehensive representation of CT scan data. The model was …

Adaptive Fusion Neural Networks For Sparse-Angle X-Ray 3d Reconstruction, Shaoyong Hong, Bo Yang, Yan Chen, Hao Quan, Shan Liu, Minyi Tang, Jiawei Tian

Electrical & Computer Engineering Faculty Publications

3D medical image reconstruction has significantly enhanced diagnostic accuracy, yet the reliance on densely sampled projection data remains a major limitation in clinical practice. Sparse-angle X-ray imaging, though safer and faster, poses challenges for accurate volumetric reconstruction due to limited spatial information. This study proposes a 3D reconstruction neural network based on adaptive weight fusion (AdapFusionNet) to achieve high-quality 3D medical image reconstruction from sparse-angle X-ray images. To address the issue of spatial inconsistency in multi-angle image reconstruction, an innovative adaptive fusion module was designed to score initial reconstruction results during the inference stage and perform weighted fusion, thereby improving …