Computer Sciences Commons^™

Accelerating Relationship Discovery In Chronic Lower Back Pain Through Knowledge Graph And Ontology Enhanced Large Language Models, Damon Lin

Master's Theses

Chronic lower back pain (cLBP) is a widespread public health burden linked to anxiety, depression, and opioid addiction. Interventions aimed at treating cLBP have shown minimal improvements in pain outcomes, leading researchers to reexamine our understanding of cLBP through constructing a causal model. However, constructing causal models through Randomized Controlled Trials are often unfeasible, and relying on domain expertise requires extensive and time-consuming research, posing a serious bottleneck for designing effective treatments. To accelerate this process, we apply Knowledge Graphs, Ontologies, and Large Language Models (LLMs) to aid researchers in determining possible causal relationships. First, we demonstrate how LLMs can …

Generalized Detection Of Animal Behavior Using Accelerometers, Alexander J. Arrieta

Master's Theses

Animal mounted sensors are becoming increasingly used to passively monitor both domestic and wild animals. Advances in lightweight accelerometer and GPS technology have allowed many animals to be fitted with high accuracy sensors for extended periods of time. This leads to new opportunities to study animal behavior without direct observation. However, interpreting the raw data is difficult due to the high volume and missing context of the information. Machine learning techniques excel at extracting information from raw data streams and are excellent candidates for processing the sensor data. However, due to large variance in how different animals execute the same …

Human Identification And Action Recognition Using Small Data And Deep Domain Adaptation, Alexander M. Glandon

Electrical & Computer Engineering Theses & Dissertations

Human identification and human action recognition problems are two important research areas for real-world security and surveillance applications. In both human identification and action recognition, it is necessary to operate by collecting small datasets in the field, possibly in a short time window of observation. This dissertation studies and develops computational modeling and high-performance machine learning (ML) and deep learning (DL) models for human identification and human action recognition using small amounts of data. These methods and computational models may be useful for different security and surveillance applications.

This dissertation on human recognition develops a ML computational model to estimate …

Large Language Models (Llms) For Clinical Note Generation: International Classification Of Disease (Icd) Code, Knowledge Graph (Kg) And Prompt Evaluation, Ivan P. Makohon

Computer Science Theses & Dissertations

In the past decade, a surge in the amount of electronic health record (EHR) data in the United States occurred, driven by a favorable policy environment created by the Health Information Technology for Economic and Clinical Health (HITECH) Act of 2009 and the 21st Century Cures Act of 2016. Clinical notes for patients’ assessments, diagnoses, and treatments are captured in these EHRs in free-form text by physicians, who spend a considerable amount of time entering them. Manually writing these notes is time-consuming, increasing patient waiting times and potentially delaying diagnoses. Large language models (LLMs), such as GPT-4o, possess the ability …

Making Explanations Make Sense: Xai For Smishing Detection, Eleni Alexandra Katsarakes

Psychology Theses & Dissertations

Explainable Artificial Intelligence (XAI) is a key component of effective human-AI collaboration, particularly in high-stakes domains such as cybersecurity. While AI tools hold promise for mitigating threats such as SMS-based phishing (SMiShing), their real-world effectiveness may hinge not just on detection accuracy, but on whether users can make sense of the system’s outputs. As SMiShing attacks grow in both frequency and sophistication, so does the urgency of designing human-centered AI systems that support user decision-making under uncertainty. This study examined how four distinct AI explanation types - Normative (rule-based), Attributive (feature-based), Exemplar (case-based), and Recommendation-Only - influence user performance, confidence, …

Multi-Agent Robotaxi Dispatch Coordination In A Real-World Simulation – Optimizing Rider Assignment, Rebalancing, And Charging Using Battery-Dependent Rewards And Welfare Maximization, Paden Thompson

All Graduate Theses and Dissertations, Fall 2023 to Present

We propose an approach to coordinate a robotaxi fleet for an autonomous ride-hail service. This is a service similar to a traditional ride-hailing service (Uber, Lyft), where customers request a ride and are then picked up in a car and dropped off in a new location; except, driverless vehicles called robotaxis are used to transport the customers.

Our approach teaches helpful coordination strategies to a robotaxi fleet while taking into account the individual battery level of the robotaxis. Each robotaxi acts as an individual agent in our simulation and can choose to pick up a rider, reposition to a new …

A Bayesian Optimisation With Segmentation Approach To Optimising Liquid Handling Parameters, Estefania Yap, Viet Huynh, Calvin Vong, Peter Vogel, Viv Louzado, Thomas Barnes, Buser Say, Michael Burke, Dana Kulić, Aldeida Aleti

Research outputs 2022 to 2026

The automation of liquid handling has become integral in speeding up pharmaceutical development for faster drug development and more affordable treatments. However, the optimal parameters which define the aspirate and dispense procedures vary between liquids and liquid volumes, limiting transfer accuracy and precision. Even state-of-the-art liquid handling devices offer predefined parameters for only a handful of liquids and volumes, resulting in novel parameter sets being defined via a manual, time-consuming process. In this study, we propose an experimental framework for automating the optimisation of liquid class parameters for arbitrary liquids. Within our framework, we propose an optimisation and segmentation algorithm, …

Ai-Based Mapping Of Offshore Wind Energy Around The Korean Peninsula Using Sentinel-1 Sar And Numerical Weather Prediction Data, Jason Sung-Uk Joh, Son V. Nghiem, Menas Kafatos, Jay Liu, Jinsoo Kim, Seung Hee Kim

Institute for ECHO Articles and Research

Offshore wind farm projects are being promoted in the seas surrounding the Korean Peninsula to secure renewable energy. To support site selection, offshore wind resource maps were generated using deep neural networks trained on Sentinel-1 SAR imagery, numerical weather prediction data, offshore wind observations, sea surface temperature, and bathymetry. The deep neural network (DNN) framework consisted of six sub-models targeting eastward and northward wind components across three regions—the Yellow Sea, Korea Strait, and East Sea—to account for spatial heterogeneity. The proposed models outperformed existing approaches, achieving mean absolute errors (MAE) ranging from 1.31 to 1.69 m/s and correlation coefficients (CC) …

From Digital Divide To Equity-Enhancing Diffusion: Generative Ai And Writing Quality, Rebecca Tukachinsky Forster, Kerk Kee, Gabriel Miao Li

Communication Faculty Articles and Research

This study investigates whether generative AI can narrow the gap between stronger and developing writers and explores the mechanisms underlying these effects. In a within-subject experiment, students wrote two essays, with and without AI assistance. Computer-aided analysis of the writing quality confirmed that while all students benefited from AI, that less skillful writers gained more. There was also no evidence of skillful writers using AI in more sophisticated and beneficial ways. The study contributes to theorizing the digital divide and offers insights into maximizing the benefits of AI tools. Theoretically, we situate generative-AI use within Diffusion of Innovations, treating ChatGPT …

Benchmarking Dna Foundation Models For Genomic And Genetic Tasks, Haonan Feng, Lang Wu, Bingxin Zhao, Chad Huff, Jianjun Zhang, Jia Wu, Lifeng Lin, Peng Wei, Chong Wu

School of Medicine Faculty Publications

The rapid evolution of DNA foundation models promises to revolutionize genomics, yet comprehensive evaluations are lacking. Here, we present a comprehensive, unbiased benchmark of five models (DNABERT-2, Nucleotide Transformer V2, HyenaDNA, Caduceus-Ph, and GROVER) across diverse genomic and genetic tasks including sequence classification, gene expression prediction, variant effect quantification, and topologically associating domain (TAD) region recognition, using zero-shot embeddings. Our analysis reveals that mean token embedding consistently and significantly improves sequence classification performance, outperforming other pooling strategies. Model performance varies among tasks and datasets; while general purpose DNA foundation models showed competitive performance in pathogenic variant identification, they were less …

Introduction To Machine Learning And Machine Learning Systems, Raffi T. Khatchadourian Ph.D.

Open Educational Resources

Lecture slides introducing machine learning and machine learning systems for an undergraduate software engineering course. Topics include what machine learning is and how it differs from traditional programming, foundation models, the major types of learning (supervised, unsupervised, reinforcement, and others), and applications across domains. Using a food-delivery time-prediction case study, the deck walks through a typical ML pipeline—data collection and cleaning, feature engineering, model training, and evaluation—and covers evaluation methods (precision and recall, confusion matrices, error measures) along with underfitting versus overfitting and the realities of learning and evaluation in production. Based on "Machine Learning in Production/AI Engineering" by Christian …

Ai-Driven Optimization Of Wind Energy Distribution In Texas Using Multi-Agent Reinforcement Learning, Waleed Amer, Owolabi Oluwadamilola, Bassey Ogbonnaya

SMU Data Science Review

Abstract. The integration of large-scale wind power into modern electrical grids presents persistent challenges due to variability, curtailment, and compliance with operational constraints. This study proposes a multi-agent reinforcement learning (MARL) framework for optimizing wind energy distribution within the Texas power grid. The system employs three specialized agents—managing wind curtailment, storage utilization, and load adjustments—to collaboratively balance supply and demand under dynamic grid conditions. Using historical operational data from the Electric Reliability Council of Texas (ERCOT), the framework was trained and evaluated on a range of scenarios encompassing both typical and extreme operating conditions. Results demonstrate substantial performance improvements compared …

Archaeological Predictive Meta-Modeling In Pre-Columbian Mexico, Peter Stamm

Electronic Theses and Dissertations

Archaeological Predictive Modeling stands firmly as an important tool for Archaeologists to predict undiscovered sites from civilizations all across the globe. While powerful, this methodology is not without its own set of qualms. Striking a balance between pure a data-driven approach while also observing leading expert theories can be a complicated task. Going further, deciding on the specific domain of features to emphasize or overlook can be a challenge within itself, as one misstep can drastically change the output of model, sometimes for the worst. In addition, creating models that can expose their reasoning process can be rather difficult to …

Unless Ai Washes The Dishes, Can We Really Call It Intelligent?, Essraa Nawar

Library Articles and Research

"A few weeks ago, I found myself sitting with a question that keeps resurfacing as AI becomes louder, faster, and everywhere. What happens when the models know everything about our lives except the one thing that matters most in the moment. It is remarkable how much of human decision making is driven not by external information but by internal states. A tightening in the chest. A sudden clarity. A quiet discomfort that redirects us before we can explain why. These signals guide our choices in ways computation cannot replicate."

Fair Use In The Age Of Generative Ai: Navigating Copyright Challenges In Educational Contexts, Wendy Wallberg

Faculty and Staff Publications & Presentations

Generative AI tools are everywhere, but what’s actually allowed when it comes to copyright and teaching? This session breaks down what fair use means in the age of AI, covers current legal cases, and offers practical tools to help educators and institutions use AI responsibly and confidently.

A Usv Path Planning Algorithm Under Special Environment Based On Td3-Rrt, Jitong Chen, Jiajia Zhou, Di Wu, Hailong Jiang

Journal of System Simulation

Abstract: In view of USV path planning in special environments such as multiple obstacles, large-size obstacles, and narrow passages, the rapidly-exploring random tree (RRT) algorithm suffers from drawbacks such as a large sampling base, low success rate, and zigzagging planned path. To address these problems, a global path planning algorithm (TD3-RRT) was proposed based on the twin delayed deep deterministic policy gradient (TD3). The USV path search model was established by combining the RRT algorithm with deep reinforcement learning. Forward looking detection was used to sense the environment to adaptively adjust the step size. The path search direction was exported …

Twin Modeling Of Gearbox Fault Early Warning System Based On Spatio-Temporal Characteristics, Yuanxing Tian, Zeyin Han, Ning Wang, Baoding Su, Weilin Xiang

Journal of System Simulation

Abstract: The wind turbine gearbox cannot effectively collect vibration signals under complex faults, which leads to the decline of fault early warning accuracy of wind turbine gearbox. To address this issue, this study investigated the twin modeling of gearbox fault early warning system based on spatio-temporal characteristics. Through the information acquisition subsystem and optical fiber sensing technology, the time sequence and spatial position data of the wind turbine gearbox during operation were collected in real time to obtain spatio-temporal characteristic data. By using the twin space, the collected spatiotemporal characteristic data of the gearbox were transmitted to the virtual space. …

Path Planning For Mobile Robots Based On Improved Artificial Potential Field Algorithm, Chi Zhang, Wei Wei

Journal of System Simulation

Abstract: In view of the problems of unreachable target areas and easy local minima in traditional artificial potential field methods, an improved artificial potential field method was proposed. The improved algorithm optimized the repulsive field function by introducing obstacle angle factors and distance factors to control the repulsive force magnitude. At the same time, an additional repulsive force towards the target point was added to solve the problem of unreachable target areas in traditional algorithms. When the robot fell into a local minimum, by introducing turning towards obstacles and turning factors to accurately apply escape forces to the robot, the …

Improvement Of Slam Localization Accuracy In Ar By Enhancing Yolov8, Jia Liu, Zengwei Zhang, Dapeng Chen, Nanxuan Huang, Bin Wang, Hong Song

Journal of System Simulation

Abstract: In the presence of dynamic interference in the environment, traditional simultaneous localization and mapping (SLAM) methods often experience reduced precision and stability in the registration of virtual objects during three-dimensional registration in augmented reality (AR). To address these issues, an improved method for dynamic scenes based on semantic segmentation and optical flow tracking was proposed. The convolutional block attention module (CBAM) attention mechanism was incorporated into YOLOv8 to enhance its focus on dynamic objects in the environment, thereby improving detection performance and accuracy. The semantic segmentation functionality of the improved YOLOv8 was integrated into the front-end of ORB-SLAM3 to …

Optimization Of Service Caching And Computation Offloading In Digital Twin Cloud-Edge Networks, Jiayu Zheng, Zhuxue Mai, Zheyi Chen

Journal of System Simulation

Abstract: In mobile edge computing (MEC), to satisfy diverse user demands by jointly optimizing service caching and computation offloading and address low-efficiency resource utilization caused by irrational resource allocation, this paper proposed a novel joint optimization of service caching and computation offloading with a convex-optimization-enabled deep reinforcement learning (JCO-CR) method. Additionally, a new model for digital twin cloud-edge networks (DTCEN) was constructed. The joint optimization of service caching and computation offloading was decoupled into two sub-problems, which were solved by an improved deep reinforcement learning method and convex optimization theory, respectively. Simulation experiments demonstrate that the proposed JCO-CR method …

Research On Cgf-Oriented Natural Language Interaction Framework, Xinmeng Li, Kai Xu, Yue Hu, Hesong Huang, Quanjun Yin

Journal of System Simulation

Abstract: To address the mismatch between existing natural language interaction frameworks and training tasks in simulation-based military training, which limits smooth interaction between trainees and Computer Generated Forces (CGF), this paper proposes a Natural Language Interaction framework for Computer Generated Forces (NLI4CGF). The framework analyzes the logic and functional requirements of natural language interaction between trainees and CGF, and establishes an interaction architecture tailored for military simulation training scenarios. It supports semantic parsing and knowledge query tasks within a prototype system developed for infantry squad simulation training. Experimental results demonstrate that the proposed model performs effectively, meets the requirements of …

Preparing For The Artificial Intelligence (Ai) Economy In The Mountain West, 2025, Kian Parikh, Taylor Volk, Maisoon Faris, Kristian Thymianos, William E. Brown Jr.

Economic Development & Workforce

This fact sheet presents data from the Brainly report, “Here Are the States Most (and Least) Prepared to Win the AI Race in 2025” for the five Mountain West states of Arizona, Colorado, New Mexico, Nevada, and Utah. This fact sheet highlights the national and individual rankings of four key metrics for each Mountain West state: the fixed percentage of businesses using artificial intelligence (AI); the number of AI jobs per 1,000 workers; the number of AI-related degrees per 10,000 people ages 20-24; and federal funding for small business technology innovation per $1 million of gross domestic product (GDP).

Research On Vehicle Path Optimization Algorithms For Urban Logistics And Distribution, Zhenpeng Ma, Hanyang Jiao, Zhe Zhang, Cheng Liu, Bo Jiang, Lin Wang

Journal of System Simulation

Abstract: Existing optimization algorithms for solving the vehicle routing problem with time windows (VRPTW) are prone to fall into local optimal solutions and have slow convergence speed. To address this issue, a K-means clustering algorithm and improved large neighborhood search algorithm (K-means-ILNSA) was proposed. A strategy of clustering before optimization was adopted, and the K-means algorithm was adopted to group the customers to be delivered, so as to improve the optimization efficiency. The genetic algorithm was adopted to optimize each group of customers generated by clustering separately to initially plan the distribution routes. The large neighborhood search (LNS) algorithm was …

Bayesian Network Parameter Learning Based On Ahp-Dst Fusion Of Expert Prior Knowledge, Haiyang Chen, Hongkai Lin, Zhifang Ren, Jing Liu, Jing Zhang

Journal of System Simulation

Abstract: Aiming at the problem of low accuracy of BN parameter learning due to the uncertainty of a single expert prior knowledge under the condition of small sample data set, a BN parameter learning method based on AHP-DST fusion expert prior knowledge was designed. The synthetic prior knowledge of experts was calculated by using the thought of analytic hierarchy process combined with the rules of evidence theory synthesis. The expert comprehensive prior knowledge was added to the normal distribution and combined with the monotonicity constraint to obtain the virtual sample information. The virtual sample information was added to the Bayesian …

Self-Calibrating Passenger Flow Simulation And Spatial Optimization For Public Building Based On Gru-Sa, Jinglin Xu, Qianru Chen, Yang Peng, Fangqiang Yu

Journal of System Simulation

Abstract: Real-time and precise passenger flow simulation provides critical data support for the optimal allocation of resources in public building facilities and the rational design of spatial layouts. This study proposed a self-calibrating passenger flow simulation and spatial optimization method for public buildings based on the GRU-simulated annealing algorithm. A simulation model incorporating spatial structures and flow lines was constructed using Anylogic. A self-calibrating passenger flow simulation method for public buildings was designed based on the GRU-simulated annealing algorithm and applied to the outpatient department of a hospital in Shanghai for passenger flow simulation. The effectiveness of the method was …

Image Feature Point Matching Algorithm Based On Attention And Hierarchical Features, Na Chen, Jiajia Bai, Qiyin Zhou, Jialin Li

Journal of System Simulation

Abstract: Feature point detection and matching is one of the core technologies in the field of intelligent driving. Aiming at the lack of consistency and continuity of feature points extracted by the existing algorithms, as well as the problem of easily ignoring the contextual semantic information when matching, this paper proposes an image feature point matching algorithm based on attention and hierarchical features (AHMF). In the feature point detection stage, differential interaction attention module (DIAM) is proposed to enhance the model's attention to the salient regions so as to improve the robustness of the feature points; further introduction of hierarchical …

Cooperative Guidance Method Considering Impact Time And Area Sealing, Zheng Guo, Guofei Li, Hua Xiong, Yunjie Wu

Journal of System Simulation

Abstract: To address the problem of multi-vehicle cooperative strike against maneuvering targets, a cooperative guidance method considering impact time control and terminal area sealing was proposed. The distributed disturbance observer was utilized to estimate target maneuvers. Based on the consensus errors of the impact time, the cooperative guidance law in the line-of-sight direction was proposed to achieve simultaneous hits on targets at a specified time. By considering the motion states of targets, the instructions of the terminal area sealing were designed to construct the sliding mode surface and design the line-of-sight guidance law, so as to ensure the convergence of …

Parking Space Reasoning Model For Complex Scenarios, Congling Zhou, Chunpeng Wang, Qiwei Xie, Yongqiang Wang, Lijun Shen

Journal of System Simulation

Abstract: In the industrialization process of the combined driving assistance system, complex parking environments bring many challenges, such as occlusion of parking spaces, uneven lighting, and missed and false detections. To address these issues, a parking space reasoning model named PIPS-Net was proposed through PINet optimization. In terms of network architecture design, the model deeply integrated the stacked hourglass network with the recurrent feature-shift aggregator (RESA) to construct a context feature extraction architecture, which enhanced the feature reasoning ability in complex scenarios. Meanwhile, it reconstructed the output to meet the requirements of parking space detection tasks, thereby jointly improving the …

Auv Path Planning Based On Behavior Cloning And Improved Dqn In Partially Unknown Environments, Lijing Xing, Min Li, Xiangguang Zeng, Ping Zhang, Bei Peng

Journal of System Simulation

Abstract: To address the problems of large randomness and slow convergence of the DQN dynamic path planning algorithm for a single autonomous underwater vehicle (AUV) in a partially unknown environment, a path planning method combining behavior cloning with A* algorithm and DQN (BA_DQN) was proposed. Based on the known environmental information, an improved A* algorithm incorporating ocean current resistance was proposed to guide DQN, thereby reducing the randomness of the DQN algorithm. By considering the complexity of the marine environment, the sampling probability was improved again after expanding the positive experience pool to enhance the training success rate. To address …

Attitude Control Of Quadrotor Uav Based On Disturbance Observer And Command Filtering, Boning Li, Ming Chen, Shuchang Qi, Haoran Meng, Lei Wang

Journal of System Simulation

Abstract: A finite-time fault-tolerant control scheme based on backstepping was proposed for the attitude tracking control problem of quadrotor UAVs. A finite-time neural network disturbance observer was designed, which could quickly compensate for the impacts of actuator failures and external disturbances, thereby enhancing the system's robustness. A first-order command filter and a compensation mechanism were introduced, which could avoid the computational complexity caused by differentiating the virtual control law and eliminate the influence of filtering errors. The hyperbolic tangent function was selected as the constraint function for the input torque, which restricted the input signal to prevent excessive magnitude …