Chemistry Commons^™

Semester-Long Course-Based Research Project In Second-Semester Organic Chemistry: Synthesizing Potential Lead Compounds For The Treatment Of A Neglected Tropical Disease, Kerry L. Barnett, Kevin M. Shea, Catherine Mcgeough, Kristine Trotta, Steven A. Williams, Minh Ly, Kathryn Aloisio

Chemistry: Faculty Publications

A semester-long research project for second-semester organic chemistry lab sections was developed. Student projects were based on preliminary data from faculty research that suggested the natural product neurolenin B to be a treatment for lymphatic filariasis. Students isolated neurolenins from the Central American plant Neurolaena lobata and proposed syntheses of previously unknown analogues using reactions learned in first- and second-semester organic chemistry. Using literature-based procedures, students ran reactions on neurolenins and analyzed their results by TLC and NMR spectroscopy. The semester culminated with a public poster session and final report using the Organic Letters template. Students in a total of …

Ambient Air Quality In The Kathmandu Valley, Nepal, During The Pre-Monsoon: Concentrations And Sources Of Particulate Matter And Trace Gases, Md Robiul Islam, Thilina Jayarathne, Isobel J. Simpson, Benjamin Werden, John Maben, Ashley Gilbert, Puppala S. Praveen, Sagar Adhikari, Arnico K. Panday, Maheswar Rupakheti, Donald R. Blake, Robert J. Yokelson, Peter F. Decarlo, William C. Keene, Elizabeth A. Stone

Chemistry and Biochemistry Faculty Publications

The Kathmandu Valley in Nepal is a bowl-shaped urban basin that experiences severe air pollution that poses health risks to its 3.5 million inhabitants. As part of the Nepal Ambient Monitoring and Source Testing Experiment (NAMaSTE), ambient air quality in the Kathmandu Valley was investigated from 11 to 24 April 2015, during the premonsoon season. Ambient concentrations of fine and coarse particulate matter (PM2:5 and PM10, respectively), online PM1, inorganic trace gases (NH3, HNO3, SO2, and HCl), and carbon-containing gases (CO2, CO, CH4, and 93 nonmethane volatile organic compounds; NMVOCs) were quantified at a semi-urban location near the center of …

Restructuring A General College Chemistry Sequence Using The Acs Anchoring Concepts Content Map, Scott A. Reid

Chemistry Faculty Research and Publications

Many STEM (science, technology, engineering, and mathematics) disciplines require a two-semester sequence of introductory college chemistry, which are thus critical gateway courses to a variety of majors. Recognizing the benefit to educators of a structure of content learning across the chemistry curriculum, in 2012, the American Chemical Society (ACS) developed the Anchoring Concepts Content Map, or ACCM. The development and subsequent revision of the general chemistry ACCM inspired the restructuring of our first-year chemistry sequence. Thus our CHEM 1001 and 1002 courses, taught in an atoms-first framework, were reorganized into a set of nine modules, each intentionally linked to one …

Tuning Internal Strain In Metal–Organic Frameworks Via Vapor Phase Infiltration For Co2 Reduction, Fan Yang, Wenhui Hu, Chongqing Yang, Margaret Patrick, Andrew L. Cooksy, Jian Zhang, Jeffery A. Aguiar, Chengcheng Fang, Yinghua Zhou, Ying Shirley Meng, Jier Huang, Jing Gu

Chemistry Faculty Research and Publications

A gas-phase approach to form Zn coordination sites on metal–organic frameworks (MOFs) by vapor-phase infiltration (VPI) was developed. Compared to Zn sites synthesized by the solution-phase method, VPI samples revealed approximately 2.8 % internal strain. Faradaic efficiency towards conversion of CO₂ to CO was enhanced by up to a factor of four, and the initial potential was positively shifted by 200–300 mV. Using element-specific X-ray absorption spectroscopy, the local coordination environment of the Zn center was determined to have square-pyramidal geometry with four Zn−N bonds in the equatorial plane and one Zn-OH₂ bond in the axial plane. The …

Characterization Of Dimerization Domains On The Mannose-6-Phosphate/Insulin-Like Growth Factor 2 Receptor, Tyler Degener

UNO Student Research and Creative Activity Fair

The mannose-6-phosphate/insulin-like growth factor 2 (M6P/IGF2) receptor is a transmembrane protein with the ability to sequester growth factors from the extracellular matrix. This behavior links the receptor to tumor suppression. On a structural level, the extracellular portion of the protein is segmented into 15 homologous repeats, which can be divided further into 5 triplet domains, labelled 1-3, 4-6, 7-9, 10-12, and 13-15. Each triplet receptor displays its own unique ligand binding affinity, including the ability to form dimers with triplets on a second M6P/IGF2 receptor. In fact, previous studies indicate that this protein functions optimally when dimerized. Thus, the purpose …

Design, Construction, And Characterization Of A Low-Cost Spectrometer With Interchangeable Parts, Jack Godek

UNO Student Research and Creative Activity Fair

A low-cost spectrometer was designed for the purpose of teaching spectroscopy. The spectrometer can be built by the student and contains interchangeable pieces such as slit width, grating, and lenses. This will allow the student to understand how changing these variables effects resolution. The spectrometer was constructed from PVC pipe, a plastic electrical box, and a USB webcam. The actual resolution of the spectrometer is close to the theoretical value, depending on which lens and grating is used. In addition, an extra piece can be added that allows absorption spectra to be collected. Having the student piece together the spectrometer …

Optoelectronic Properties Of Carbon-Bound Boron Difluoride Hydrazone Dimers, Daniela Cappello, Ryan R. Maar, Viktor N. Staroverov, Joe Gilroy

Chemistry Publications

The creation of dimeric boron difluoride complexes of chelating N-donor ligands is a proven strategy for the enhancement of the optoelectronic properties of fluorescent dyes. We report dimers based on the boron difluoride hydrazone (BODIHY) framework, which offer unique and sometimes unexpected substituent-dependent absorption, emission, and electrochemical properties. BODIHY dimers have low-energy absorption bands (l_max = 421 to 479 nm, e = 17,200 to 39,900 M⁻¹ cm⁻¹) that are red-shifted relative to monomeric analogues. THF solutions of these dimers exhibit aggregation-induced emission upon addition of water, with emission enhancement factors ranging from 5 to 18. …

A Neuro-Ontology For The Neurological Examination, Daniel B. Hier, Steven U. Brint

Chemistry Faculty Research & Creative Works

Background: The Use of Clinical Data in Electronic Health Records for Machine-Learning or Data Analytics Depends on the Conversion of Free Text into Machine-Readable Codes. We Have Examined the Feasibility of Capturing the Neurological Examination as Machine-Readable Codes based on UMLS Metathesaurus Concepts. Methods: We Created a Target Ontology for Capturing the Neurological Examination using 1100 Concepts from the UMLS Metathesaurus. We Created a Dataset of 2386 Test-Phrases based on 419 Published Neurological Cases. We Then Mapped the Test-Phrases to the Target Ontology. Results: We Were Able to Map All of the 2386 Test-Phrases to 601 Unique UMLS Concepts. a …

Interactions Between The Azoarcus Ribozyme And Manganese (Ii) Divalent Cations, Joshua Martwick

University Honors Theses

The RNA world hypothesis suggests that RNA systems were the first form of life on the planet, beginning to appear approximately 4 billion years ago. Group I introns are self-splicing RNA elements in extant organisms and use Mg²⁺ as the principle divalent cation to promote catalysis. The group I intron ribozyme from Azoarcus is frequently used in origin of life studies, partially due to its autocatalytic abilities - the Azoarcus ribozyme is able to be broken into fragments and reassemble itself into its fully functional ribozyme. Previous work identified metal binding sites on the Azoarcus ribozyme which use both …

Assessing The Ecological Risk Of Heavy Metal Sediment Contamination From Port Everglades Florida, Dimitri G. Giarikos, Laura White, Amy C. Hirons

SECLER Data

Port sediments are often contaminated with metals and organic compounds from anthropogenic sources. Port dredging can remobilize contaminated sediments, resulting in harmful impacts to the benthic community. Twelve sediment cores were collected from four Port Everglades, Florida sites and a control site; surface sediment was collected at two nearby coral reef sites. Sediment cores, sampled every 5 cm, were quantified for 14 heavy metals using induced coupled plasma mass spectrometry (ICPMS). Geo-accumulation index shows moderate-to-strong contamination of As and Mo in port sediments, and potential ecological risk indicates moderate-to-significantly high overall metal contamination. Arsenic port sediment concentrations exceed threshold effect …

Long-Term Variations (2001-2016) Of Satellite-Based Pm2.5 Concentrations And Its Determinants In Xinjiang, Northwest Of China, Wei Wang, Alim Samat, Jilili Abuduwaili

Karakalpak Scientific Journal

Based on the long-term series of satellite-retrieved PM2.5 concentrations, this study explored the spatiotemporal variation and aggregation characteristics of PM2.5 concentrations in Xinjiang from 2001 to 2016 by using standard deviational ellipse analysis and spatial autocorrelation statistics method. The result showed that the annual average PM2.5 concentrations was high in the north slope of Tianshan mountain and the western Tarim desert where High-High clusters mainly distribute. Furthermore, PM2.5 concentrations in the north slope of Tianshan mountain increased significantly from 2001 to 2016. Based on the result of GeoDetector model, population density was the most dominant factor of PM2.5 concentrations (q=0.55). …

Influence Of The Glycirrizin Acid Complex On Fungal Diseases Of Winter Wheat, U. Shapulatov, M. K. Allaniyazova, S. Kh. Khozhiboboeva, Kh. Kh. Kushiev

Karakalpak Scientific Journal

This work presents the results of studies of the effect of glycyrrhizic acid complexes on phytoptogens and the growth and development of wheat. The study of the action of growth regulators in the field often leads to mixed results that GA: TA GA-Cu, GA-Zn, GA: YES, GA: BT significantly reduces the charge level of wheat with parasitic diseases. However, the positive effect of the studied drugs is limited by fungistatic activity. The exceptionally positive role of glycyrrhizic acid complexes indicates the need for a wide study of silicon fertilizers and their introduction into the production of grain crops. The ambiguity …

Development Of Hplc Separation Method Of Ginsenosides On A Polyvinyl Alcohol-Bonded Stationary Phase, A. B. Soliev, A. T. Adylova, I. Yu. Abdurakhmonov, G. N. Artikova

Karakalpak Scientific Journal

A simple high performance liquid chromatographic assay for the simultaneous quantitative analysis of seven ginsenosides, Rb1, Rb2, Rc, Rd, Re, Rf and Rg1 in commercial ginseng products is described. Chromatographic separation of the analytes was achieved in less than 20 min using a polyvinyl alcohol-bonded column with UV detection at 203 nm. Optimization of chromatographic conditions was determined by a three-factor central composite design, the variables being the percentage of acetonitrile in the mobile phase, column temperature and flow rate. A full quadratic model was found to be adequate in describing the separation of ginsenosides on the polyvinyl alcohol-bonded stationary …

Optimization Of A Digital Ion Trap To Perform Isotope Ratio Analysis Of Xenon For Planetary Studies, Timothy Vazquez

USF Tampa Graduate Theses and Dissertations

Ion trap mass spectrometers present a powerful analytical tool which not only enables mass spectrometric determination of analyte species but also has the added feature of being able to act as an ion storage device. As a mass spectrometer, ion traps can achieve a reasonable mass range with flexible mass resolution while boasting a considerably smaller footprint when compared to conventional time-of-flight or magnetic sector instruments. Due to their smaller geometries, high-pressure tolerance, and ability to perform tandem mass spectrometry, ion trap mass spectrometers are ideal candidates for portable applications such as deployment to another planetary body. While ideal candidates …

Crystal Structure Of Pantoprazole Sodium Sesquihydrate Form I, C16h14f2n3o4sna(H2o)1.5, Diana Gonzalez '20, Joseph T. Golab, James A. Kaduk, Amy M. Gindhart, Thomas N. Blanton

Student Publications & Research

No abstract provided.

Powder X-Ray Diffraction Of Fluorometholone, C22h29fo4, Diana Gonzalez '20, Joseph T. Golab, James A. Kaduk, Amy M. Gindhart, Thomas N. Blanton

Student Publications & Research

No abstract provided.

Powder X-Ray Diffraction Of Flucytosine, C4h4fn3o, Nilan V. Patel, Joseph T. Golab, James A. Kaduk, Amy M. Gindhart, Thomas N. Blanton

Student Publications & Research

No abstract provided.

Powder X-Ray Diffraction Of Trimethoprim Form I, C14h18n4o3, Jerry Hong '20, Joseph T. Golab, James A. Kaduk, Amy M. Gindhart, Thomas N. Blanton

Student Publications & Research

No abstract provided.

Valorization Of Carrot Processing Waste, Alexandra M. Duval

Master's Theses

Commercial carrot processors produce up to 175,000 tons of carrot waste annually. Carrot Mash (CM) is the term referring to the waste by-product of peeled baby carrot processing. Transportation of carrot processing waste is expensive due to its high- water content (approx. 83-95%). High in bioactive compounds (carotenoids) and dietary fibers, it is expected that its conversion into a value-added by-product is of interest to the carrot processing industry. Hemicellulose-rich plant materials have proven to be a source of oligosaccharides, which are known for their beneficial prebiotic activity. The objectives of this research were to: 1) determine the effect of …

An Assessment Of The Spatial Variation Of Isotopic Ratios In A Candu-6 Reactor For Nuclear Treaty Monitoring, Aaron W. Burkhardt

Theses and Dissertations

The Preparatory Commission for the Comprehensive Nuclear Test Ban Treaty Organization developed the International Monitoring System for monitoring for nuclear explosive testing and compliance with nuclear treaties. Many of the International Monitoring System stations are capable of detecting radionuclides that can be used to determine their origin and creation environment. However, there is not a single unique signature associated with each creation environment. Nuclear reactors, for example, can have a wide range of isotopic concentrations caused by spatial variations in neutron flux intensity and energy. As a single sample only provides a single isotopic measurement, this can make disambiguation difficult …

A Machine Learning Approach To Characterizing Particle Morphology In Nuclear Forensics, Daniel A. Gum

Theses and Dissertations

A machine learning approach is taken to characterizing a group of synthetic uranium bearing particles. SEM images of these lab-created particles were converted into a binary representation that captured morphological features in accordance with a guide established by Los Alamos National Laboratory. Each particle in the dataset contains an association with chemical creation conditions: processing method, precipitation temperature and pH, calcination temperature are most closely tied to particle morphology. Additionally, trained classifiers are able to relate final products between particles, implying that morphological features are shared between particles with similar composition.

Chitosan Curcumin Film As A Sensor For Detection Of O-Nitrophenol And Fluoride Ion Using Fluoresce Quenching Technique, Soma Chakraborty, Andrea Paola D. Ilagan

Chemistry Faculty Publications

Curcumin was immobilized in chitosan films fabricated by solvent casting method. The amount of curcumin immobilization was more when methanol was used as a solvent to dissolve curcumin than the butanol solvent. The maximum amount of curcumin immobilized per gram of chitosan film was 0.023 g. Immobilized curcumin was not released back in water even after prolong contact of the films with water. Fluorescence intensity of the films got quenched when these films were in contact with an aqueous solution of o-nitrophenol (ONP) and sodium fluoride (NaF). The extent of quenching depended on the concentration of these attributes. Fluorescence intensity …

Hydrophilic Porphyrins Based Chemosensors For First Transition Series Metal Ions [Chemistry], Sunaina Singh

Open Educational Resources

General Chemistry is a two-semester course (General Chemistry I, SCC 201 and General Chemistry II, SCC 202) required for majors in Biology and Environmental Sciences.

This lab experiment, aligned to LaGuardia Community College’s Inquiry and Problem Solving Core Competency and Written Communication Ability was designed for General Chemistry I (SCC 201 Honors) course. Honors courses in LaGuardia emphasize critical thinking, analytical writing, and introduce students to research. This lab experiment provides an opportunity for students to engage in hands-on laboratory work, to develop laboratory skills, and to conduct research in the classroom by using two water soluble porphyrins to detect …

Hydrogen Peroxide Triggers An Increase In Cell Surface Expression Of System XC− In Cultured Human Glioma Cells, Leah A. Chase, Mary Verheulen Kleyn, Natasha Schiller, Abby Goltz King, Guillermo Flores, Sasha Balcazar Engelsman, Christina Bowles, Sara Lang Smith, Anne E. Robinson, Jeffrey Rothstein

Faculty Publications

System x_c⁻ exchanges extracellular cystine for intracellular glutamate across the plasma membrane of many cell types. One of the physiological roles of System x_c⁻ is to provide cystine for synthesis of the antioxidant glutathione. Here we report that hydrogen peroxide (H₂O₂) triggers the translocation of System x_c⁻ to the plasma membrane within 10 min of the initial exposure. Specifically, we observed a three-fold increase in ³⁵S-L-cystine uptake following a 10 min exposure to 0.3 mM H₂O₂. This effect was dose-dependent with an EC₅₀ for …

A Halogen Bonding Perspective On Iodothyronine Deiodinase Activity, Eric S. Marsan, Craig A. Bayse

Chemistry & Biochemistry Faculty Publications

Iodothyronine deiodinases (Dios) are involved in the regioselective removal of iodine from thyroid hormones (THs). Deiodination is essential to maintain TH homeostasis, and disruption can have detrimental effects. Halogen bonding (XB) to the selenium of the selenocysteine (Sec) residue in the Dio active site has been proposed to contribute to the mechanism for iodine removal. Polybrominated diphenyl ethers (PBDEs) and polychlorinated biphenyls (PCBs) are known disruptors of various pathways of the endocrine system. Experimental evidence shows PBDEs and their hydroxylated metabolites (OH-BDEs) can inhibit Dio, while data regarding PCB inhibition are limited. These xenobiotics could inhibit Dio activity by competitively …

Evaluation Of The Overall Binding Of Acetohexamide And Tolbutamide With Methyl Glyoxal-Modified Hsa By High-Performance Affinity Chromatography, Ashley G. Woolfork, David S. Hage

Department of Chemistry: Dissertations, Theses, and Student Research

High performance affinity chromatography (HPAC) was used in a zonal competition format to investigate the overall binding of two sulfonylurea drugs with modified human serum albumin (HSA). The in vitro modifications of this protein that were examined included glycation, as occurs in the presence of elevated glucose levels during diabetes, and the formation of advanced glycation end-products (AGEs) due to the reaction of HSA with methylglyoxal (MGo). The sulfonylurea drugs acetohexamide and tolbutamide, which are used to treat type II diabetes, were each injected onto 10 mm x 2.1 mm i.d. affinity microcolumns that contained normal HSA and HSA modified …

Analysis Of Hydroxychloroquine Interaction With Serum Proteins By High Performance Affinity Chromatography, Kyungah Suh, Sadia Sharmeen, David S. Hage

Department of Chemistry: Dissertations, Theses, and Student Research

Personalized medicine or precision medicine has been an emerging market for better treatments of patients under varying physiological conditions.To improve the development of personalized medicine, a higher understanding of drug-protein binding between serum transport proteins and the unbound form of pharmaceuticals is needed. Human Serum Albumin (HSA) and Alpha1-acidglycoprotein (AGP) play a crucial role in pharmacokinetics as they are two most abundant transport serum proteins in body circulatory system. Inter-individual variabilities of serum proteins, such as the physiological condition of patients, have been believed to alter the drug-serum protein binding. Fig. 1 shows an example of the cause of inter-individual …

Toxic Ketene Gas Forms On Vaping Vitamin E Acetate Prompting Interest In Its Possible Role In The Evali Outbreak, Robert Strongin

Chemistry Faculty Publications and Presentations

Recent efforts by the Centers for Disease Control and Prevention (CDC), the US Food and Drug Administration (FDA), and state authorities have led to the determination that vitamin E acetate (VEA) is strongly associated with e-cigarette or vaping product use-associated lung injury (EVALI) (1). VEA has been found in nearly all patient lung fluid samples analyzed and not observed in lung fluid from healthy cohorts. Despite strong evidence linking VEA to EVALI, its putative role as a causative agent has yet to be determined. To address the key issue of whether VEA is a just marker or a significant mediator …

Synthesis And Fabrication Of Trimetallic (Ru-Mn Co) Catalyst Supported On Tio2 And Ni(Oh)2 Thin Films For Photoelectrochemical Applications, Che Mat Ahmad Nazeer

Student Works (2020-2029)

Anatase supported heterogeneous photocatalyst consisting of RuO2, MnO2 and Co3O4 (1:13:13 ratio) was synthesized by precipitation method. The film of the prepared catalyst was fabricated by electrophoretic deposition technique in an aqueous solution of 0.1 mM ammonia and tested for photoelectrocatalytic (PEC) oxidation of methanol in 0.1M KOH under visible light irradiation. The as-prepared photocatalyst was characterized by FTIR, UV–Vis, XRD, Raman spectroscopy, FESEM/EDX, TEM, BET, XPS and TPR. The PEC study by cyclic voltammetry indicates that the oxidation of methanol to CO2 and H2O upon exposure to visible light occurs between 400 and 800 nm. The smaller value of …

Asking Why: Analyzing Students' Explanations Of Organic Chemistry Reaction Mechanisms Using Lexical Analysis And Predictive Logistic Regression Models, Amber J. Dood

USF Tampa Graduate Theses and Dissertations

In order to evaluate student understanding of chemical reactions and reaction mechanisms, it is necessary to ask students to construct written or oral explanations of mechanistic representations. Studies have shown that students can reproduce pictorial representations of organic chemistry mechanisms without understanding the meaning of the representations. Grading written assessments is time-consuming, which limits their use in large-lecture courses. To address this limitation, lexical analysis and logistic regression techniques can be used to develop models that predict human scoring for constructed-response items. In this dissertation, students’ responses to constructed-response items about what is happening and why in organic chemistry reaction …