Chemistry Commons^™

Horseradish Peroxidase-Attapulgite Clay Nanocomposites: Fabrication And Application To Sensing The Extracellular H2O2 Released From Cells, Ping Wu, Chen-Xin Cai

Journal of Electrochemistry

The nanostructured attapulgite clay was employed as a support matrix for immobilizing horseradish peroxidase (HRP). FTIR and electrochemical methods demonstrated that HRP had been effectively assembled on attapulgite surface with the formation of HRP-attapulgite nanocomposites. The HRP-attapulgite hybrid was deposited on the glassy carbon (GC) electrode forming the HRP-attapulgite/GC electrode. Cyclic voltammetric results showed a pair of well-defined redox peaks, which were ascribed to direct electron transfer (DET) of HRP, with the formal potential E₀′ = -335 mV (vs. SCE) in the phosphate buffer solution (PBS, pH 7.0). The dependence of E₀′ on solution pH indicated …

Novel Electrochemical Interfaces Based On Functional Nanomaterials And Their Related Applications, Cheng-Zhou Zhu, Lei Han, Shao-Jun Dong

Journal of Electrochemistry

Due to the unique optical, electronic, magnetic and catalytic properties, functional nanomaterials provide new opportunities for the rapid development in a variety of disciplines and show considerable promise in different fields. Specifically, constructions of the novel electrochemical interface using various nanomaterials and exploring their advanced electrochemical properties have received great attention to develop electrochemical devices with potential applications. In this account, we focus on our up-to-date progress in the construction of novel electrochemical interfaces based on nanomaterials, mainly highlighting our research advances on electrochemical sensors, fuel cells and fluorescence spectroelectrochemistry. These novel advanced nanomaterials endow them excellent performances and open …

Preparation And Photocatalytic Properties Of Zno Nanorod Arrays On Ti Substrates, Jia-Ming Yang, Ling-Jun Han, Li-Ping Zhong, Zhen-Hai Liang

Journal of Electrochemistry

In this paper, the uniform ZnO nanorod arrays were prepared by galvanostatic electrodeposition on Ti Substrates. The morphology and structure of samples were characterized by scanning electron microscopy (SEM) and X-ray diffraction (XRD). The effects of the concentration of Zn(NO₃)₂ and the deposition current on the morphology of the ZnO nanorod arrays were investigated. Photocatalytic properties of ZnO nanorod arrays were investigated by degradation of methyl orange (MO) under UV-light irradiation. The analysis revealed that the concentration of Zn(NO₃)₂ and the deposition current strongly influenced the morphology of the ZnO nanorod arrays. Compared with …

The Ionic Diffusion Model For The Solid Oxide Cathode And Its Verification By The Electrolysis Of Ta2O5 In Molten Cacl2, Hua-Lin Chen, Zhi-Yong Wang, Xian-Bo Jin, George Z. Chen

Journal of Electrochemistry

The deoxidation speed of a solid oxide cathode in molten CaCl₂ can be estimated by the PRS steady diffusion model of O^2-, which correlates the deoxidation speed with the precursor porosity, P, the metal-to-oxide molar volume ratio, R, and the cathode volume shrinkage S. The PRS model indicates that the porosity of the oxide cathode has important influence on the deoxidation speed, and provides a very simple equation for the prediction of the optimal cathode porosity. For the electrolysis of Ta₂O₅, the porosity of the cathode is better to be within 50%. …

Effects Of Conformational Transformations On Electronic Transport Properties Of Optical Molecular Switches: An Ab Initio Study, Yuan-Yuan He, Jian-Wei Zhao

Journal of Electrochemistry

A series of model molecules with 4 kinds of conformational transformations have been investigated as optical molecular switches by using density functional theory combined with nonequilibrium Green’s function method. The theoretical calculations show that molecules after conformational transformations have photoswitching characteristics. We find that the photochromic molecules with the same conformational transformation usually have a similar current on/off state when they are applied as photoshwitches. Among these transformations, the molecular switch with E(“trans”)/Z(“cis”)-isomerisation of the NN double bond has the highest current on-off ratio. The influences of the energy gap (HLG) between the highest occupied molecular orbital (HOMO) and the …

Microfabrication And Redox Properties Of The Single Microcrystal Of Na3Co(Cn)6/Nacl Solid Solution, Yi-Liang Zhu, De-Zhi Yang, Ya-Qiong Su, De-Yin Wu, Zhong-Qun Tian, Dong-Ping Zhan

Journal of Electrochemistry

Although the molecular structures are similar to each other, the redox property of Co(CN)₆^3- at solid/liquid interface is not so good as Fe(CN)₆^3-. In this paper, scanning electrochemical microscopy (SECM) was adopted to construct an electrochemical microsystem with a volume of fL~pL, in which a micropipette with micrometer-sized orifice was employed as the scanning tip. Due to the evaporation of water, the NaCl electrolyte is concentrated to form a microcrystal. During the crystallization, the redox species Co(CN)₆^3- replaced the sites of NaCl₆^5- unit due to their matching lattice parameters, i.e., the …

23Na Mas Nmr Spectroscopic Study Of Na2Mnpo4F As Cathode Material For Sodium-Ion Battery, Xu Hou, Gui-Ming Zhong, Xiao-Chen Lin, Zi-Geng Liu, Xiao-Biao Wu, Yong Yang

Journal of Electrochemistry

The Na₂MnPO₄F is one of the promising cathode materials for the sodium ion batteries. In the paper, we employed the ex situ X-ray diffraction and solid state NMR techniques to study the charge and discharge processes of this material, including the crystal structure and sodium sites changes. The ex situ x-ray diffraction patterns showed that two new diffraction peaks could be observed at 31^o and 36^o indicating an intermediate phase formed with the extraction of Na⁺. From the ²³Na MAS NMR spectrum of the material, three peaks were seen at -209 …

Effects Of Oxygen Coverage And Hydrated Proton Model On The Dft Calculation Of Oxygen Reduction Pathways On The Pt(111) Surface, Li-Hui Ou, Sheng-Li Chen

Journal of Electrochemistry

DFT calculation is used to study various possible steps in the oxygen reduction reaction (ORR), including the adsorption and dissociation process of O₂ and the serial protonation process of dissociated products to form H₂O on the Pt(111) surface. By using slabs of different sizes, and different numbers of pre-adsorbed oxygen atoms, the coverage effects on the pathways are investigated. The calculated results using different hydrated proton models are also compared. It is shown that the initial step of the ORR is the formation of a protonated end-on chemisorbed state of OOH*, which can transform to an unprotonated …

Electrochemistry At Liquid/Liquid Interfaces And Its Recent Progresses, Jing Gu, Yong-Hui Qiao, Xin-Yu Zhu, Xiao-Hong Yin, Xin Zhang, Ye Chen, Zhi-Wei Zhu, Yuan-Hua Shao

Journal of Electrochemistry

Electrochemistry and electroanalytical chemistry at a liquid/liquid interface have attracted much attention in the past few decades since they have been closely related to many applications including exploration in mechanisms of extraction processes and chemical sensing, as well as investigations in phase transfer catalysis, drug release and mimicking the function of biological membranes. In this review, recent progresses in this field in the last decade, especially the investigations in microstructure of liquid/liquid interface, charge (ion and electron) transfer reactions and functionalization of liquid/liquid interfaces, are reviewed.

Laser-Induced Fluorescence Imaging Of Calcium And Barium Ion Beams In The Second Vacuum Stage Of A Commercial Inductively Coupled Plasma Mass Spectrometer, Alisa Jane Edmund

Theses and Dissertations

Inductively coupled plasma-mass spectrometers (ICP-MS) have become the workhorses of many analytical labs over the past few decades. Despite the instruments' high sensitivities and low detection limits there is still a demand for improvements in several aspects of their performance. One area of improvement is in the understanding of "space charge effects" Space charge effects are classified as problems associated with the ion beam. Problems are created when the mutual repulsions of the ions make consistent focusing of the ion beam difficult. This is particularly problematic with samples containing a low concentration analyte contained within a high salt solution matrix, …

Plasminogen Activator Inhibitor-1 Inhibitors And Methods Of Use Thereof To Modulate Lipid Metabolism, Daniel A. Lawrence, Dudley Strickland, Jacqueline Cale, Enming Joe Su, Cory Emal, Mark Warnock

Patents

The invention relates to plasminogen activator-I (PAI-1) inhibitor compounds and uses thereof in the treatment of any disease or condition associated with elevated PAI-1. The invention includes, but is not limited to, the use of such compounds to modulate lipid metabolism and treat conditions associated with elevated PAI-1, cholesterol, or lipid levels.

Application Of Nuclear Magnetic Resonance Based Metabolomics To Study The Central Metabolism Of Staphylococci, Bo Zhang

Department of Chemistry: Dissertations, Theses, and Student Research

Metabolomics studies the collection of small molecules (metabolites) involved in enzymatically catalyzed reactions, cell signaling and cellular structure. Perturbations in metabolite concentrations have been used to reflect the activity of corresponding enzymes or proteins. Nuclear magnetic resonance (NMR) spectroscopy is a well-known approach for the structure determination of biological macromolecules. Alternatively, NMR has recently been established as a valuable tool of metabolomics, in which NMR spectral signals correlate small molecules with cellular activities. This has been accomplished through the chemometric analysis of high-throughput one dimensional ¹H spectra (metabolic fingerprinting) and quantitative metabolite identification based on two dimensional ¹H, …

Synthesis, Characterization And Mechanistic Studies Of Biomolecules@Mesomofs, Yao Chen

USF Tampa Graduate Theses and Dissertations

Encapsulation of biomolecules is of great interest to research advances related to biology, physiology, immunology, and biochemistry, as well as industrial and biomedical applications such as drug delivery, biocatalysis, biofuel, food and cosmetics. Encapsulation provides functional characteristics that are not fulfilled by free biomolecules and stabilizes the fragile biomolecules. In terms of biocatalysis, solid support can often enhance the stability of enzymes, as well as facilitate separation and recovery for reuse while maintaining activity and selectivity. Various kinds of materials have been used for encapsulation of biomolecules, among which, porous materials are an important group. Metal-organic frameworks (MOFs) have attracted …

Glycosylation Modulates Melanoma Cell Α2Β1 And Α3Β1 Integrin Interactions With Type Iv Collagen, Maciej J. Stawikowski, Beatrix Aukszi, Roma Stawikowska, Mare Cudic, Gregg B. Fields

Chemistry and Physics Faculty Articles

Although type IV collagen is heavily glycosylated, the influence of this posttranslational modification on integrin binding has not been investigated. In the present study, galactosylated and non-galactosylated triple-helical peptides have been constructed containing the α1(IV)382-393 and α1(IV)531-543 sequences, which are binding sites for the α2β1 and α3β1 integrins, respectively. All peptides had triple-helical stabilities of 37 °C or greater. The galactosylation of Hyl393 in α1(IV)382-393 and Hyl540 and Hyl543 in α1(IV)531-543 had a dose dependent influence on melanoma cell adhesion which was much more pronounced in the case of α3β1 integrin binding. Molecular modeling indicated that galactosylation occurred on the …

Metabolomics Of Apcmin/+ Mice Genetically Susceptible To Intestinal Cancer, Jean Eudes J. Dazard, Yana Sandlers, Stephanie K. Doerner, Nathan A. Berger, Henri Brunengraber

Chemistry Faculty Publications

Background: To determine how diets high in saturated fat could increase polyp formation in the mouse model of intestinal neoplasia, ApcMin/+, we conducted large-scale metabolome analysis and association study of colon and small intestine polyp formation from plasma and liver samples of ApcMin/+ vs. wild-type littermates, kept on low vs. high-fat diet. Label-free mass spectrometry was used to quantify untargeted plasma and acyl-CoA liver compounds, respectively. Differences in contrasts of interest were analyzed statistically by unsupervised and supervised modeling approaches, namely Principal Component Analysis and Linear Model of analysis of variance. Correlation between plasma metabolite concentrations and polyp numbers was …

A Novel Label-Free Colorimetric Assay For Dna Concentration In Solution, Molla R. Islam, Michael J. Serpe

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Optical devices were fabricated by sandwiching a “monolithic” poly(N-isopropylacrylamide-co-N-(3-aminopropyl) methacrylamide hydrochloride) (pNIPAm-co-APMAH) microgel layer between two semitransparent Au layers. These devices, referred to as etalons, exhibit characteristic multipeak reflectance spectra, and the position of the peaks in the spectra primarily depends on the distance between the Au surfaces mediated by the microgel layer thickness. Here, we show that the positively charged microgel layer can collapse in the presence of negatively charged single stranded DNA (ssDNA) due to ssDNA induced microgel crosslinking. The collapse results in a change in the etalon's optical properties, which can be used to detect target DNA …

Characterizing The B-P Stretching Vibration In Phosphorus-Substituted Phosphine Boranes, Dana N. Reinemann, Gregory S. Tschumper, Nathan I. Hammer

Chemistry Faculty Research & Creative Works

The experimental Raman spectra of three phosphorus-substituted phosphine boranes with bulky hydrocarbon substituents are presented and compared to the results of electronic structure computations by using the M06-2X method and the 6-311G(2df,-2pd) basis set. Total-energy distributions (TEDs) are calculated to describe the degree of mixing of the dative-bond stretching vibration with other simple internal coordinates. This level of theory is found to accurately reproduce the B-P stretching frequency in all three crystalline solids. The Raman spectra of five smaller B-P-containing molecules, including BH₃PH₃, are also simulated at this level of theory and compared to previous experimental …

Environmentally Persistent Free Radicals (Epfrs). 3. Free Versus Bound Hydroxyl Radicals In Epfr Aqueous Solutions, Lavrent Khachatryan, Cheri A. Mcferrin, Randall W. Hall, Barry Dellinger

Collected Faculty Scholarship

Additional experimental evidence is presented for in vitro generation of hydroxyl radicals because of redox cycling of environmentally persistent free radicals (EPFRs) produced after adsorption of 2-monochlorophenol at 230 °C (2-MCP-230) on copper oxide supported by silica, 5% Cu(II)O/silica (3.9% Cu). A chemical spin trapping agent, 5,5-dimethyl-1-pyrroline-N-oxide (DMPO), in conjunction with electron paramagnetic resonance (EPR) spectroscopy was employed. Experiments in spiked O¹⁷ water have shown that ∼15% of hydroxyl radicals formed as a result of redox cycling. This amount of hydroxyl radicals arises from an exogenous Fenton reaction and may stay either partially trapped on the surface …

Development And Assessment Of Self-Explaining Skills In College Chemistry Instruction, Adrian Villalta-Cerdas

USF Tampa Graduate Theses and Dissertations

The prevalent trend in chemistry instruction relies on what has been described as the classroom game. In this model, students take a passive role and the instructor does all the explaining (thinking), and learning is trivialized to knowing the correct answers (memorizing) and being able to produce them when prompted (regurgitating). The generation of explanations is central to scientific and technological development. In the process of figuring out explanations, the generation of inferences relies on the application of skills associated with scientific behaviors (e.g., analytical reasoning and critical thinking). The process of explanation generation causes a deeper analysis and revision …

A New Liquid Chromatography/Tandem Mass Spectrometry Method For Quantification Of Gangliosides In Human Plasma, Qianyang Huang, Xiang Zhou, Danting Liu, Baozhong Xin, Karen Cechner, Heng Wang, Aimin Zhou

Chemistry Faculty Publications

Gangliosides are a family of glycosphingolipids characterized by mono- or polysialic acid-containing oligosaccharides linked through 1,3- and 1,4-β glycosidic bonds with subtle differences in structure that are abundantly present in the central nervous systems of many living organisms. Their cellular surface expression and physiological malfunction are believed to be pathologically implicated in considerable neurological disorders, including Alzheimer and Parkinson diseases. Recently, studies have tentatively elucidated that mental retardation or physical stagnation deteriorates as the physiological profile of gangliosides becomes progressively and distinctively abnormal during the development of these typical neurodegenerative syndromes. In this work, a reverse-phase liquid chromatography/tandem mass spectrometry …

Rovibrational Analysis Of The V7 Band Of Isobutylene, Zach Gutmann

Student Theses and Dissertations

Isobutylene is a molecule of great interest for modeling an explosive detection scheme. Previous analyses in the Reeve lab include low resolution (0.125 cm -1) FTIR scans of the 7 and 28 bands of isobutylene. These scans were used as a baseline for calibrating high resolution (0.01 - 0.001 cm -1) QCL scans of the 7 band. Amplitude modulation and frequency modulation techniques were utilized, though the latter was primarily used in this work. Rotational constants, including J', Ka, and Kc values for several peaks were assigned using combination differences.

Generation Of Chimeric Antibody Light Chain Plasmid, Lily Arendt

DePaul Discoveries

In order to determine the distance between the antigen-binding site and the fragment crystallizable (Fc) region of an antibody using single-molecule Förster Resonance Energy Transfer, dyes must be attached to these locations. To accomplish this, the variable regions of the light and heavy chains of an antibody can be modified and a dye-reactive amino acid introduced into the Fc region. Initial attempts to alter the variable light chain (V_L) gene included trying to ligate a 350bp variable gene into an 11,000bp plasmid. When these attempts were unsuccessful, the variable light chain gene was ligated into a commercially available …

Lead Optimization Of Dual Tubulin And Hsp27 Inhibitors, Bo Zhong, Rati Lama, Daniel G. Kulman, Bibo Li Ph.D., Bin Su Ph.D.

Chemistry Faculty Publications

Tubulin and heat shock protein 27 (Hsp27) are well-characterized molecular targets for anti-cancer drug development. We previously identified lead compounds that inhibited both Hsp27 and tubulin. These compounds exhibited extensive anti-cancer activities against the proliferation of various human cancer cell lines. In the current study, a systematic ligand based structural optimization led to new analogs that significantly inhibited the growth of a panel of breast cancer cell lines. Furthermore, the most potent compounds were examined with tubulin polymerization assay and Hsp27 chaperone activity assay. The compounds showed potent tubulin polymerization inhibition but no Hsp27 inhibitory effect. The structural optimization dissected …

Examination Of Quasienantiomers Of Oxadiazinanones Which Fail To Fractionally Crystallize, Patricia Ann Higgins

Theses and Dissertations

This thesis reports the crystallization of two new quasiracemic crystals, the synthesis of a new oxadiazinanone, and the identification of crystals of two new compounds. In previous research the quasiracemates, (5,R,6,S)-4-cyclohexyl-5-methyl-6-phenyl-2H-1,3,4-oxadiazinan-2-one and (5S,6R)-4-isopropyl-5-methyl-6-phenyl-2H-1,3,4-oxadiazinan-2-one, were mixed in solution and crystallized. Instead of fractionally crystallizing, as would be expected, the compounds formed quasiracemic co-crystals. This suggested that other mixtures of oxadiazinanones would be possible candidates for studying compounds which fail to fractionally crystallize.

The first step in the process involves the synthesis of oxadiazinanones, using literature methods. A 4-step process …

Chemiluminescence, Ronald Lovett

Topics in Quantum Mechanics

No abstract provided.

Characterization Of Methylene Diphenyl Diisocyanate Protein Conjugates, Morgen Mhike

Dissertations and Theses

Diisocyanates (dNCO) such as methylene diphenyl diisocyanate (MDI) are used primarily as cross-linking agents in the production of polyurethane products such as paints, elastomers, coatings and adhesives, and are the most frequently reported cause of chemically induced immunologic sensitization and occupational asthma (OA). Immune mediated hypersensitivity reactions to dNCOs include allergic rhinitis, asthma, hypersensitivity pneumonitis and allergic contact dermatitis.

There is currently no simple diagnosis for the identification of dNCO asthma due to the variability of symptoms and uncertainty regarding the underlying mechanisms. Immunological sensitization due to dNCO exposure is traditionally thought to require initial conjugation of the dNCO to …

Interactions Of Eukaryotic Translation Initiation Factors And 3' Untranslated Region Of Barley Yellow Dwarf Virus Mrna During Protein Synthesis: A Study Of Equilibrium Binding, Kinetics And Thermodynamics, Bidisha Banerjee

Dissertations, Theses, and Capstone Projects

Eukaryotic initiation factor (eIF) 4F binding to mRNA is the first committed step in cap-dependent protein synthesis. Barley Yellow Dwarf Virus (BYDV) employs a cap-independent mechanism of translation initiation which is mediated by a structural element BTE (BYDV translation element) located in the 3’ UTR of its mRNA. eIF4F bound the BTE and a translational inactive mutant with high affinity; thus questioning the role of eIF4F in translation of BYDV. To examine the effects of eIF4F in BYDV translation initiation, BTE mutants with widely different in vitro translation efficiencies ranging from 5-164% compared to WT were studied. Using fluorescence anisotropy …

The Application Of Dispersion Staining And Infrared Microspectroscopy To Analyze Physical Evidence In Developing Countries, Thiti Mahacharoen

Dissertations, Theses, and Capstone Projects

In developing countries like Thailand and in remote forensic laboratories around the world, scientific investigations of crimes are limited by the shortage of trained personnel and financial resources. The premise of this research is that polarized light microscope and dispersion staining methods will be developed which allow investigators with limited training to analyze physical evidence at a minimal cost. This research identifies specific liquids for the analysis of trace evidence using the dispersion staining technique. The development of dispersion staining technique and identification of specific liquid will extend the application of forensic science to remote laboratories and in the field …

Metal Nanoparticles Immobilized On Basic Supports As Catalysts For Hydrogenation And Dehydrogenation Reactions Of Relevance To Cleaner Fossil Fuels And Alternative Sources Of Energy, Reena Rahi

Dissertations, Theses, and Capstone Projects

We developed a series of catalysts, composed of metal nanoparticles immobilized on basic supports for the hydrogenation of heteroaromatics of relevance to cleaner fossil fuels and biodiesel, and for the dehydrogenation of heteroaromatics of relevance to hydrogen storage in organic liquids. Our catalyst design involves nanostructured catalysts composed of metal particles immobilized on basic supports capable of ionic mechanism that may avoid catalyst poisoning and enhance catalytic activity.

We prepared a new catalyst composed of Pd nanoparticles immobilized on MgO by NaBH4 reduction of Na2PdCl4 in methanol in the presence of the support. TEM measurements revealed well-dispersed 1.7 nm Pd …

Studies On The Synthesis Of Orthogonally Protected Azalanthionines, And Of Routes Towards B-Methyl Azalanthionines, By Ring-Opening Of N-Activated Aziridine-2-Crboxylates, Keith O'Brien, Keith Ó Proinsias, Fintan Kelleher

Articles

Orthogonally protected azalanthionines were successfully synthesised by the ring-opening of N-activated aziridine-2-carboxylates with protected diaminopropanoic acids (DAPs). The required DAPs were also prepared by ring-opening of N-activated aziridine-2-carboxylates with para-methoxybenzylamine, but it was found that the choice of aziridine protecting groups dictated both the success of the reaction as well as the regioselectivity of the isolated products. Attempts to extend the methodology to the preparation of the more sterically demanding b-methyl azalanthionines have, so far, been unsuccessful.