Chemistry Commons^™

Effect Of Cmc And Hpc Mixture On The Photocatalytic Activity Of Nd-Tio_2/Sio_2 Film Under Visible Light Irradiation, Parviz Aberoomand, Shahram Moradi, Susan Samadi, Mohammad Saber Tehrani, Mohammad Hadi Givianrad

Turkish Journal of Chemistry

Neodymium-titania/silica films were prepared by the sol-gel method with the addition of various amounts of hydroxy propyl cellulose (HPC) and 5.09 \times 10^{-5} g g^{-1}_{solution} of carboxy methyl cellulose (CMC) in saturated conditions. The porous Nd-TiO_2/SiO_2 was obtained after heat treatment for 2 h at 500 °C, with the surface area up to 276 m^2 g^{-1}, which was measured using the Brunauer, Emmett, and Teller (BET) method. Scanning electron microscopy (SEM) showed that the particle size of Nd-TiO_2/SiO_2 decreased and the microstructure of the film became loose in suitable conditions with the addition of CMC to HPC. Subsequently, the photocatalytic …

Synthesis And Characterisation Of Tris(2,4-Dinitrophenoxo)Monooxovanadium(V) And Its Complex Salts, Neeraj Sharma, Reena Sharma, Meena Kumari, Subhash Chaudhry

Turkish Journal of Chemistry

The monooxovanadium(V) complex of composition [VO(OC_6H_3(NO_2)_2-2,4)_3] (I) was synthesized by the reaction of VOCl_3 with Me_3SiOC_6H_3(NO_2)_2-2,4 in toluene and characterised by elemental analyses, molar conductance, and IR, ^1H- and ^{13}C-NMR, and mass spectral studies. The reactions of (I) with alkali metal 2,4-dinitrophenoxides [MOC_6H_3(NO_2)_2-2,4] (M = Li, Na, K) yield complex salts of composition M[VO(OC_6H_3(NO_2)_2-2,4]_4 authenticated by physicochemical and IR spectral studies. Thermal behaviour of complexes was studied by TG and DTA techniques. The molecular modelling calculations of the parent complex and its complex salts were performed to visualise the probable geometry around vanadium metal, which, coupled with spectroscopic evidence, suggests …

Simultaneous Determination Of Trace Sn(Ii) And Sn(Iv) Using Differential Pulse Polarography And Application, Güler Somer, Ülkü Ünal

Turkish Journal of Chemistry

A new method was established for the simultaneous determination of Sn(II) and Sn(IV) using differential pulse polarography (DPP). Among several electrolytes, 0.1 M NaOH in the presence of 0.1 M KNO_3 was found to be the most suitable one. In this medium, Sn(II) had 2 peaks, at -0.74 and -1.17 V, which were sharp and very sensitive. Sn(IV), on the other hand, had a very small peak at -0.92 V when its concentration was higher than 4.0 \times 10^{-4} M. Thus, it was decided to determine Sn(IV) after reduction into Sn(II). In the presence of both Sn(II) and Sn(IV), Sn(II) …

Azocalixarenes.7: Synthesis And Study Of The Absorption Properties Of Novel Mono-Azo Substituted Chromogenic Calix[4]Arenes, Hasaletti̇n Deli̇göz, Özlem Özen Karakuş

Turkish Journal of Chemistry

Eight new mono-azo substituted chromogenic calix[4]arenes (1-8) were synthesized by diazo-coupling reactions in which 25,26,27-tribenzoyloxy-28-hydroxy-5,11,17-tri-(tert-butyl)calix[4]arene and diazonium salts (2-, 3-, and 4-nitroaniline; 4-phenyl azoaniline; 3- and 4-chloroaniline; or 2- and 4-methylaniline) formed the corresponding mono-azo substituted derivatives in high yields. The mono-azo substituted calix[4]arenes were characterized by UV-Vis, FT-IR, and ^1H-NMR spectroscopic techniques. Elemental analysis was also carried out. In addition, the effects of varying pH levels and solvents upon the absorption ability of azocalix[4]arenes substituted with electron-donating and electron-withdrawing groups at their o-, m-, and p- positions were studied. The results proved that the absorption maxima of the prepared …

Synthesis And Biological Activity Of 5-Substituted-2-Amino-1,3,4-Oxadiazole Derivatives, Sanjeev Kumar

Turkish Journal of Chemistry

Electrical energy offers numerous benefits for performing synthesis, including increased reaction rates, enhanced yields, and cleaner chemistries. 5-Substituted-2-amino-1,3,4-oxadiazoles were synthesized directly from the semicarbazone at a platinum electrode under controlled potential electrolysis in an undivided cell assembly in acetonitrile. The compounds were screened for antibacterial and antifungal activity against Staphylococcus aureus, Klebsiella pneumoniae, Pellicularia salmonicolor, and Macrophomina phaseolina.

A Study Of Behavior Of Some 5-Substituted- 4-Phenyl-1,2,4-Triazoline-3-Thiones In Sulfuric Acid Solution Using Characteristic Vector Analysis, Vesna Dimova

Turkish Journal of Chemistry

The protonation process of 1,2,4-triazoline-3-thiones (T3T) was studied in aqueous sulfuric acid using the UV method. Characteristic vector analysis (CVA) was used to reconstruct the experimentally obtained UV spectra, to overcome difficulties in calculating the protonation constants of T3T, and to separate the effect of protonation from the generalized medium effect. pK_{TH}+ values were calculated using the Hammett acidity function method, the Bunnett and Olsen method, and the excess acidity function method. The obtained values for m, \phi and m* were close to those characteristic for similar thio compounds, indicating that the protonation site in the molecule of T3T is …

Synthesis And Evaluation Of The Analgesic Activity Of Some New Isoxazolo[4,5-D]Pyridazin-4(5h)-One Derivatives, Oya Ünsal Tan, Keri̇man Özadali, Özgür Yeşi̇lyurt, Hakan Kayir, İsmai̇l Tayfun Uzbay, Ayla Balkan

Turkish Journal of Chemistry

Some isoxazolo[4,5-d]pyridazin4(5H)-one derivatives were synthesized and tested for their analgesic activity. The analgesic activities of the compounds were determined by hot-plate and acetic acid writhing tests using morphine and diclofenac as references. Compounds 4a, 4f, 4g, and 4i (25 mg/kg) showed analgesic profiles similar to that of morphine (5 mg/kg).

Synthesis And Antiinflammatory Activity Of Novel 2,5-Disubstituted Thiophene Derivatives, Sahar Badr

Turkish Journal of Chemistry

New series of 2,5-disubstituted thiophenes were synthesized. Thiosemicarbazones 1a-b were reacted with various reagents, such as diethyl-2-bromomalonate, ethyl-2-chloroacetoacetate, thioglycolic acid, 4-substituted phenacyl bromides, and acetic anhydride, to afford heterocyclic substituted thiophene derivatives 2a-b, 3a-b, 4a-b, 5a-b, 6a-b, and 7a-b, respectively. Moreover, cyclization of the key intermediate 1b with chloroacetic acid yielded thiazolidine 9, which on reaction with appropriate aromatic aldehydes afforded the corresponding arylidene derivatives 10a-f. Finally, reaction of N^\-arylidene cyanoacetohydrazide 11 with sulfur and phenylisothiocyanate yielded thiazoline derivative 12, which on treatment with triethylorthoformate and acetic anhydride afforded thiazolo[4,5-d]pyrimidinone derivative 13. Some of the newly synthesized compounds showed promising …

Antimicrobial Activity And Volatile Constituents Of The Flower, Leaf, And Stem Of Paeonia Daurica Grown In Turkey, Gonca Tosun, Nuran Kahri̇man, Canan Albay, Şengül Alpay Karaoğlu, Nuretti̇n Yayli

Turkish Journal of Chemistry

The volatile constituents of the essential oils from the flower, leaf, and stem of Paeonia daurica Andrews were analyzed by GC and GC-MS. A total of 74 compounds were identified, constituting over 95.0%, 80.8%, and 98.2% of the oil composition of the flower, leaf, and stem of P. daurica, respectively. Aldehydes were shown to be the main group of constituents of the flower and stem parts, at 39.1% and 79.8%, respectively. However, the major group in the leaf oil was found to be oxygenated monoterpenes (43.5%). Salicylaldehyde (20.7% and 79.5%) was the major component of the flower and stem oils …

A Simple And Rapid Spectrophotometric Determination Of Trace Level Simple And Rapid Spectrophotometric Determination Of Trace Level Chromium Using Bis (Salicylaldehyde) Orthophenylenediamine In Nonionic Micellar Media, Rubina Soomro, Jamaluddin Ahmed, Najma Memon

Turkish Journal of Chemistry

Bis(salicylaldehyde)orthophenylenediamine (BSOPD) has been proposed as new analytical reagent for the direct spectrophotometric determination of chromium. It reacts with chromium(VI) in slightly acidic (0.1 -- 0.3 M H_2SO_4) micellar medium to form a yellow - orange chelate with a molar ratio 2:3. The most remarkable point of this method is that the molar absorptivities of the Cr^{VI} -- BSOPD complex formed in the presence of nonionic TritonX -- 100 surfactant are almost 10 times higher than the value observed in aqueous solution. This results in enhancing the sensitivity and selectivity of the method. The reaction is instantaneous and the maximum …

Enantioselective Complexation Of Chiral Lariat Crown Ethers And Chiral Primary Alkylammonium Perchlorates, Mehmet Zafer Köylü, Tarik Aral, Mehmet Karakaplan, Şafak Özhan Kocakaya, Hali̇l Hoşgören

Turkish Journal of Chemistry

In order to investigate the enantiomeric recognition abilities toward 2 chiral alkylammonium perchlorates (AmI, AmII) by ^1H-NMR titration method in CDCl_3, 4 chiral lariat ethers 8-11 with a (p-methoxyphenoxy) methyl flexible side arm were used. The most effective enantiomeric recognition was obtained by LCEs 9 and 11 toward AmII, by K_R/K_S 6.58 and K_S/K_R 6.63, respectively. The effect of macroring size, subunit of macroring, and side arm appeared to have strong influence on the binding ability of these alkylammonium ions.

Controlled Growth Of Two-Dimensional Copper Nanoplates In Graphite Gallery, Xiaobei Bin, Jiazang Chen, Hong Cao

Turkish Journal of Chemistry

Copper nanoplates embedded in a graphite gallery were obtained by in situ reduction of stage 1, stage 2, and stage 3 CuCl_2-graphite intercalation compound precursors. The characterization results indicated that the morphology of the copper species was that of a 2-dimensional or quasi-2-dimensional nanoplate in the graphite gallery. Interaction between the metallic nanoplates and graphene sheet was also detected. The hexagonal graphene network restricted the crystallization orientation of the copper nanoparticles, and, at the same time, the finite space between the graphene sheets prevented the increase of the thickness. This method would provide a convenient route to synthesize or assemble …

Polarographic Determination Of Anticancer Drug Vitamin K_3 With Direct And Indirect Methods/Application To Serum And K_3 Injection Solution, Ümmi̇han Taşkoparan Yilmaz, Güler Somer

Turkish Journal of Chemistry

In this work, direct and indirect methods for determination of vitamin K_3 were developed using differential pulse polarography. The reaction between sulfite and the quinone (Q) form of vitamin K_3 was used for indirect determination, since the sulfite peak at -0.7 V is sharp and very reproducible in 0.1 M HAc NaAc (pH = 5.5). It was found that at pH 4.5-5.5, this reaction was quantitative and very fast when the temperature was 45 °C. For its direct determination, on the other hand, vitamin K_3 was standardized by the indirect method using standard sulfite as the reducing agent. The calibration …

Synthesis And Spectral Characterization Of A Decavanadate/Chitosan Complex, Violeta Dimitrova Kassabova Zhetcheva, Lilyana Parvanova Pavlova

Turkish Journal of Chemistry

A decavanadate/chitosan complex was synthesized by crosslinking chitosan with decavanadate anions at a pH of 3. The materials were characterized by Fourier transformed infrared spectroscopy (FT-IR), X-ray diffraction (XRD), X-ray photoelectron spectroscopy (XPS), absorption spectroscopy (UV-Vis), and transmission electron microscopy (TEM). The spectroscopic results indicated that the decavanadate/chitosan complex was successfully obtained as result of an ionic crosslinking of the chitosan with decavanadate anions.

Preparation, Morphology, And Thermomechanical Properties Of Coal Ash/Polyethylene Oxide Composites, Khalid Saeed, Muhmmad Ishaq, Muhmmad Ilyas

Turkish Journal of Chemistry

Coal ash/polyethylene oxide (ash/PEO) composite films were prepared by the solution casting technique. Scanning electron microscopy (SEM) micrographs indicated that the ash particles were dispersed and embedded well within the polymer matrix. The size of the ash particles in the PEO matrix was less than 3 \mu m. The polarized optical microscopic (POM) analyses revealed that the pure PEO, upon crystallization, showed distinct crystalline spherulites of a considerable size. The size of the spherulites was decreased by the incorporation of ash particles into the polymer matrix, which might be due to the nucleation role of ash in ash/PEO composite, and …

Assimilable Organic Carbon Generation From Algogenic Organic Matter In Drinking Water, Ji-Hoon Kim, Young-Ju Kim, Tahir Imran Qureshi

Turkish Journal of Chemistry

A study of assimilable organic carbon (AOC) derived from algogenic organic matter in different drinking water resources was conducted. Seasonal changes in the concentration of AOC at Kamafusa Dam were dependent on the algal cell numbers. Variations in AOC concentrations were found to be more reliant on the AOC-P17 component than the AOC-NOX component. The algal culture experiment showed that extracellular organic matter (EOM) released during the growth of Phormidium tenue in M-11 culture medium led to a significant increase in AOC concentration; however, no significant variations of AOC concentration were observed in CT culture medium containing high amounts of …

Determination Of Stability Constants Of 5-(2-Hydroxybenzylidene)-2-Thioxodihydropyrimidine-4,6(1h,5h)-Dione With Copper(Ii) And Mercury(Ii) Ions, Morteza Bahram, Nader Noroozi Pesyan, Abdolhossein Naseri, Masomeh Tasbihforosh

Turkish Journal of Chemistry

In this work, a hard model chemometric method was used to determine the stability constants of copper(II) and mercury(II) complexes with the newly synthesized ligand 5-(2-hydroxybenzylidene)- 2-thioxodihydropyrimidine-4,6(1H,5H)-dione in acetonitrile by UV-Vis spectrophotometry. The ligand forms stable complexes with both metal cations. The protonation constants of the ligand were also measured in an ethanol-water (1:1) mixture.

Synthesis, Crystal Structure, And Antioxidant Properties Of Novel 1,2,4-Triazol-5-Ones Containing 3,4-Dimethoxyphenyl And 3,4-Dihydroxyphenyl Moiety, Yasemi̇n Ünver, Sevgi̇ Meydanal, Kemal Sancak, Di̇lek Ünlüer, Reşat Ustabaş, Esra Düğdü

Turkish Journal of Chemistry

A series of new 4-(3,4-dimethoxyphenethyl)-5-akyl/aryl-2H- 1,2,4-triazol-3(4H)-ones (3a-g) was obtained by the reaction of ethyl 2-(ethoxy)(alkylidene/arylidene)hydrazinecarboxylate (1) and 2-(3,4-dimethoxyphen- yl)ethanamine (2). Compounds 4a-f and 5 were synthesized from the reaction of corresponding compounds 3a-f and 3g with BBr_3, respectively. With elemental analysis, IR, ^1H-NMR, and ^{13C-NMR spectral data, 14 newly synthesized compounds were characterized. The structure of compound 3a was inferred through IR, ^1H- and ^{13}C-NMR, elemental analysis, and X-ray spectral techniques. In addition, the newly synthesized chemicals were screened for their antioxidant properties. Among the chemicals tested, 4a, 4c, 4d, 4f, and 5 exhibited the highest degree of antioxidant activity.

Synthesis And Properties Of New Optically Active And Organosoluble Poly(Ester-Imide)S Containing L-Valine Moieties In The Main Chain By Direct Polycondensation Reaction, Khalil Faghihi, Meisam Shabanian, Mohsen Hajibeygi

Turkish Journal of Chemistry

New optically active poly(ester-imide)s (PEIs) containing bicyclo[2,2,2]oct-7-ene-2,3,5,6-tetracarboxylic diimide in the main chain were prepared by the reaction of N,N'-(bicyclo[2,2,2]oct-7- ene-2,3,5,6-tetra carboxylic)-bis-L-valine 4 as a diacid monomer with various aromatic diols 5a-g in a system of tosyl chloride (TsCl), pyridine (Py), and N,N-dimethylformamide (DMF). The reactions with TsCl were significantly promoted by controlling alcoholysis with diols, in the presence of catalytic amounts of DMF, to give a series of optically active poly(ester-imide)s. The resulting new polymers were obtained in good yields and inherent viscosities, ranging between 0.36 and 0.62 dL g^{-1}, and were characterized with FT-IR and ^1H-NMR spectroscopy, including specific …

Synthesis And Spectrophotometric Determination Of Acidity Constants Of 2,3,4,6'-Tetrahydroxy-3'-Sulfoazobenzene And Their Use In Determination Of Aluminum, Tufan Güray, Cemi̇l Öğreti̇r, Tevfi̇k Gedi̇kbey, Abu Ali̇ Hüseyi̇nli̇

Turkish Journal of Chemistry

A novel azo derivative, 2,3,4,6'-tetrahydroxy-3'-sulfoazobenzene (THSA), was synthesized by using pyrogallol. The acid dissociation constants, or K_a values, of THSA were determined by the UV-visible spectroscopic technique. The protonation and deprotonation behaviors of the title molecule were studied from the super basic to the super acid region (i.e. 10 N NaOH to 98% H_2SO_4), including the pH region. A selective and sensitive UV-visible spectrophotometric method was devised for determination of aluminum by using this ligand. The developed method was successfully applied to an alunite mineral and to pharmaceutical preparations for the determination of aluminum.

Synthesis And Anti-Helicobacter Pylori Activity Of (4-Nitro-1-Imidazolylmethyl)-1,2,4-Triazoles, 1,3,4-Thiadiazoles, And 1,3,4-Oxadiazoles, Asal Fallah-Tafti, Tahmineh Akbarzadeh, Parastoo Saniee, Farideh Siavoshi, Abbas Shafiee, Alireza Foroumadi

Turkish Journal of Chemistry

A series of [(4-nitro-1H-imidazol-1-yl)methyl]-1,2,4- triazoles and 1,3,4-thiadiazoles were prepared and evaluated for their activity against sensitive and resistant H. pylori strains. Study of the structure-activity relationship of these series of compounds indicated that the type of nitroimidazole moiety and the pendent group on the heteroaryl analog dramatically impact the anti-H. pylori activity. In triazole series, compound 5d, containing a 4-methyl phenyl group on the triazole ring, was the most potent compound tested against both metronidazole-sensitive and -resistant strains at a concentration of 8 \mu g.

Molecular Modeling And Antimycobacterial Studies Of Mannich Bases: 5-Hydroxy-2-Methyl-4h-Pyran-4-Ones, Barkin Berk, Demet Us, Si̇nem Öktem, Zühtü Tanil Kocagöz, Berrak Çağlayan, Işil Aksan Kurnaz, Di̇lek Demi̇r Erol

Turkish Journal of Chemistry

The World Health Organization lists tuberculosis among the top 3 leading causes of death from a single infectious agent, and reported cases of multidrug-resistant tuberculosis (MDR-TB) are on the rise. In an attempt to improve MDR-TB drug-directed therapy, we synthesized 11 4-substituted piperazine derivatives of 3-hydroxy-6-methyl-4H-pyran-4-one pharmacophore by reacting 5-hydroxy-2-methyl-4H-pyran-4-one with suitable piperazine derivatives under Mannich reaction conditions. Inhibitory effects of the 11 compounds on Escherichia coli DNA gyrase were evaluated via DNA gyrase supercoiling assay. The minimum inhibitory concentrations (MIC) of the 11 compounds and 41 compounds from our previous studies against Mycobacterium tuberculosis H37RV were assessed, in vitro, …

Synthesis And In Vitro Antimycobacterial Activities Of Novel 6-Substituted-3(2h)-Pyridazinone-2-Acetyl-2-(Substituted/ Nonsubstituted Acetophenone) Hydrazone, Semra Utku, Mehtap Gökçe, Gönül Aslan, Gül Bayram, Mahmut Ülger, Gürol Emekdaş, Mustafa Fethi̇ Şahi̇n

Turkish Journal of Chemistry

The difficulty in managing tuberculosis includes the prolonged duration of the treatment, the emergence of drug resistance, and coinfection with HIV/AIDS. Tuberculosis control requires new drugs that act on novel drug targets to help in combating resistant forms of Mycobacterium tuberculosis and reduce the treatment duration. For this purpose, 6-substituted-3(2H)-pyridazinone-2-acetyl-2- (substituted/nonsubstituted acetophenone) hydrazone derivatives were synthesized and their structures were elucidated by elemental analyses, IR, and ^1H-NMR. The in vitro antimycobacterial activities of synthesized compounds 5a-l were determined by the agar proportion method against Mycobacterium tuberculosis H37Rv. Among the target compounds, 5b and 5f exhibited the best antimycobacterial activity, with …

E)--2--Acetyl--4--(4--Methoxyphenyldiazenyl) Phenol: X--Ray And Dft--Calculated Structure, Serap Yazici, Çi̇ğdem Albayrak, İsmai̇l Erdem Gümrükçüoğlu, İsmet Şenel, Orhan Büyükgüngör

Turkish Journal of Chemistry

The crystal structure of the title compound, (E)-2-acetyl-4-(4-methoxyphenyldiazenyl) phenol, displays a trans configuration of the azo moiety as found for other azo (diazene) derivatives. The aromatic mean planes are nearly coplanar and the dihedral angle between the 2 aromatic rings is 3.04(8)°. The molecules, with strong intramolecular O--H...O hydrogen bonding, are linked by weak van der Waals interactions in the 3-dimensional network. The molecular geometry, determined using X-ray diffraction techniques, was also calculated with the density functional theory (DFT), employing the hybrid exchange-correlation functional B3LYP. Experimental and theoretical IR spectra of the compound were also calculated for comparison. The results …

Searching The Protein Structure Database For Ligand-Binding Site Similarities Using Cpass V.2, Robert Powers, Jennifer C. Copeland, Jaime L. Stark, Adam Caprez, Ashu Guru, David R. Swanson

Robert Powers Publications

Background: A recent analysis of protein sequences deposited in the NCBI RefSeq database indicates that ~8.5 million protein sequences are encoded in prokaryotic and eukaryotic genomes, where ~30% are explicitly annotated as “hypothetical” or “uncharacterized” protein. Our Comparison of Protein Active-Site Structures (CPASS v.2) database and software compares the sequence and structural characteristics of experimentally determined ligand binding sites to infer a functional relationship in the absence of global sequence or structure similarity. CPASS is an important component of our Functional Annotation Screening Technology by NMR (FAST-NMR) protocol and has been successfully applied to aid the annotation of a number …

Precise Control Of Highly Ordered Arrays Of Nested Semiconductor/Metal Nanotubes, Diefeng Gu, Helmut Baumgart, Kandabara Tapily, Pragya Shrestha, Gon Namkoong, Xianyu Ao, Frank Müller

Electrical & Computer Engineering Faculty Publications

Lithographically defined microporous templates in conjunction with the atomic layer deposition (ALD) technique enable remarkable control of complex novel nested nanotube structures. So far three-dimensional control of physical process parameters has not been fully realized with high precision resolution, and requires optimization in order to achieve a wider range of potential applications. Furthermore, the combination of composite insulating oxide layers alternating with semiconducting layers and metals can provide various types of novel applications and eventually provide unique and advanced levels of multifunctional nanoscale devices. Semiconducting TiO₂ nanotubes have potential applications in photovoltaic devices. The combination of nanostructured semiconducting materials …

Evaluation Of The Physicochemical Properties And Stability Of Solid Lipid Nanoparticles Designed For The Delivery Of Dexamethasone To Tumors, Melissa Howard

University of Kentucky Doctoral Dissertations

Pre-clinical and clinical trials suggest that pre-treatment with dexamethasone (Dex) may facilitate enhanced uptake of subsequently administered chemotherapeutic agents. To reduce the side effects associated with systemic administration of Dex, solid lipid nanoparticles (SLNs) containing dexamethasone palmitate (Dex-P) were prepared as a means of achieving tumor-targeted drug delivery. These studies were aimed at evaluating the physicochemical properties and both the physiological and storage stability of the SLNs.

SLNs were prepared using nanotemplate engineering technology. Stearyl alcohol (SA) was used as the lipid phase with Brij^® 78 and Polysorbate 60 as surfactants and PEG6000 monostearate as a long-chain PEGylating agent. …

Fabrication And Characterization Of Mesoscale Protein Patterns Using Atomic Force Microscopy (Afm), Pei Gao

University of Kentucky Doctoral Dissertations

A versatile AFM local oxidation lithography was developed for fabricating clean protein patterns ranging from nanometer to sub-millimeter scale on octadecyltrichlorosilane (OTS) layer of Si (100) wafer. This protein patterning method can generate bio-active protein pattern with a clean background without the need of the anti-fouling the surface or repetitive rinsing.

As a model system, lysozyme protein patterns were investigated through their binding reactions with antibodies and aptamers by AFM. Polyclonal anti-lysozyme antibodies and anti-lysozyme aptamer are found to preferentially bind to the lysozyme molecules on the edge of a protein pattern before their binding to the interior ones. It …

Interactions And Effects Of Biomolecules On Au Nanomaterial Surfaces, Manish Sethi

University of Kentucky Doctoral Dissertations

Au nanoparticles are increasingly being used in biological applications. Their use is of interest based upon their unique properties that are achieved at the nanoscale, which includes strong optical absorbances that are size and aggregation state dependent. Such absorbances can be used in sensitive chemical/biological detection schemes where bioligands can be directly attached to the nanoparticle surface using facile methods. Unfortunately, a number of complications persist that prevent their wide-scale use. These limitations include minimal nanoparticle stability in biological-based media of high ionic strength, unknown surface functionalization effects using simple biomolecules, and determining the binding motifs of the ligands to …

Investigation Of The Toxicity And Efflux Of Polychlorinated Biphenyls And Hydroxylated Polychlorinated Biphenyls In Escherichia Coli, Shen Geng

University of Kentucky Master's Theses

Polychlorinated biphenyls (PCBs) are persistent organic pollutants. Due to their properties, PCBs accumulate in the food-chain and post a threat to the health of human beings and wildlife. Hydroxylated PCBs (OH-PCBs) are oxidative metabolites of PCBs and are more hydrophilic than their parent PCBs. One of the best approaches to break down these contaminants is through bioremediation, which is an environmental friendly process that uses microorganisms to restore natural environment.

Towards this goal, we have investigated the toxicity and accumulation of PCBs and OH-PCBs in a Gram-negative bacterium, Escherichia coli. We have also determined the role played by a …