Chemistry Commons^™

An Endophytic Fungus As A Source Of New Antifungal Compounds, Lisa Marie Jungbauer

Honors Theses, 1963-2015

Medical advances in society such as organ transplants, prolonged chemotherapy, and those that lengthen the lives of AIDS patients and the elderly increase the number of immunocompromised individuals(1). When the immune system is compromised, opportunistic fungi can flourish and become fatal. Current antifungal treatments are limited and often toxic(2,3). In addition, strains of fungi resistant to available antifungals are emerging(4,5). Fungi were selected as the source of potential new antifungal agents because fungal antagonism has been reported in most fungal ecosystems(6). Endophytic fungi, which inhabit the spaces between plant cells, are known producers of natural products and that assist plants …

Investigation Of Iron-Removing Agents, Melanie Wolfe

Theses, Dissertations and Capstones

Benign chemical agents for removing iron from people with iron-overload diseases are lacking; thus the purpose of this investigation is to evaluate the toxicity of acetaminophen in iron-overloaded mice compared to normal mice and to evaluate the iron-mobilizing ability of this agent in an iron-overloaded mouse model. Female Hilltop (ICR) CVF mice, ranging between six months to one year of age, were used in these experiments. Mice were given intraperionteal(ip) injections of 300 mg/kg ferric hydroxide-dextran complex for a total of five, eight, or thirteen injections to achieve an iron-overloaded state. Iron-overloaded mice were given ip injections of either 350,200, …

Thin Layer Chromatographic Separation And Quantitation Of L-Dopa And L-Tyrosine In Mixtures, Gülendem Günendi̇, Farünni̇sa Pamuk

Turkish Journal of Chemistry

A new TLC separation and quantitation method for L-tyrosine and L-Dopa mixtures was developed. The minimum tyrosine and Dopa quantities which can be measured by this technique are 0.7 and 1.5 \mu g respectively. The method may be used to measure the kinetic parameters of polyphenoloxidase as well as to trace the enzyme catalyzed conversion of L-tyrosine into L-Dopa. For a set of 20 measurements the maximum difference between any two measurements of spot areas was found to be 3 mm^2 (4.5\%) for L-Dopa (4 \mu g) and 2mm^2 (5.6\%) for L-tyrosine (1\mu g).

Spectrophotometric Determination Of Uranium In Waste Water Of Phosphoric Acid And Fertilizer Manufacturing Process, Ahmet Uyanik, Ni̇hat Tinkiliç, M. Odabaşoğlu, Hüseyi̇n Karaca

Turkish Journal of Chemistry

In this study, waste water drains and produced phosphate fertilizers of conventional wet-process (hemihydrate) phosphoric acid and phosphate fertilizer plants were investigated to determine the average uranium contents in the active manufacturing period. The method chosen for the determination of uranium was an extension of an existing spectroanalytical method and was adopted for waste water analysis as described. The results show that average uranium contents (mg m^{-3}) in a three-month period are appreciable in the waste water channel of the H_3PO_4 unit, produce acid containing 28% P_2O_5 (20.75), H_3PO_4 unit, produce acid containing 54% P_2O_5 (35.69), NPK (Nitrogen, Phosphorus, Potassium …

The Effects Of Detergent Pollution On The Corrosion Of Iron And Aluminium, Si̇bel Zor, B. Yazici, M. Erbi̇l

Turkish Journal of Chemistry

The current-potential values were measured with iron or aluminium electrodes in solutions of 3.5% NaCl containing 30, 150, 300 ppm linear alkylbenzene (LAB) and detergents (LAS) at pH8. Polarization resistances (Rp) were determined using the values of current and potentials. The corrosion rates of iron and aluminium were determined in 2 and 4 hour intervals using the Mansfeld-Oldham equation based on the Stern-Geary and Butler-Volmer equations.

Cyclopropane Fatty Acid Expression In Plants, Katherine M. Schmid

Scholarship and Professional Work - LAS

Pants [sic] are transformed with a bacterial cyclopropane fatty acid synthase gene to produce lipids containing cyclopropane fatty acids. Using this technology dihydrosterculate is produced in oilseed crops such as rape.

Molecular Composition Of The Louse Sheath, Craig N. Burkhart, B Artur Stankiewicz, Irene Pchalek, Michael A. Kruge, Craig G. Burkhart

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

Flash pyrolysis-gas chromatography/mass spectrometry was used to assess the chemical composition of the head louse's nit sheath. The pyrolyzate of the female insect's secretions, which form a cement-like cylinder holding the egg onto the hair, is dominated by amino acid derivatives and fatty acids. No chitin-specific compounds were detected in the sheath. These results, contrary to previous reports, show that the polymeric complex of the sheath is composed of proteinaceous moieties, possibly cross-linked to aliphatic components. This study constitutes the first chemical characterization of the pyrolysis products of insect (louse) glue and unequivocally confirms that louse sheaths are not chitinous, …

A Biogeochemical Comparison Of Fossil (Carboniferous) And Modern Crustose Red Algae, Michael A. Kruge, John E. Utgaard, William Ferry

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

The nature of the contribution of the various types of algae to sedimentary organic matter continues to be a topic of research interest. Crustose red algae have however received less attention than other types. The fossil calcareous red algae (Rhodophyta) analyzed in this study are two relatively unrecrystallized specimens of Parachaetetes (Family Solenoporacea) from the lower part of the Ste. Genevieve Formation (Carboniferous, Visean) in Union County, Illinois, USA. They occurred in the patch reef phase of a small carbonate mudmound-patchreef. The three modern specimens (collected and identified by F. Collier) are the crustose algae Lithothamnion, Clathromorphum and Phymatolithon …

Chemistry Of Maceral And Groundmass Density Fractions Of Torbanite And Cannel Coal, Zhiwen Han, Michael A. Kruge

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

Microscopically, torbanite and cannel coal are composed of coarser macerals set in a fine-grained to amorphous groundmass. It is often assumed that the amorphous groundmass is genetically related to the distinct macerals. The separation of macerals and groundmass from 14 late Paleozoic torbanite, cannel, and humic coals permits the analysis of individual constituents using elemental analysis and flash pyrolysis-gas chromatography/mass spectrometry (Py-GC/MS). Cluster and principal component analyses of the Py-GC/MS data further reveal the chemical similarities and differences between the various constituents. Pyrolyzates of Botryococcus-related alginites are characterized by an abundance of normal alkadienes, alkenes, and alkanes. Even their …

Classification Of Torbanite And Cannel Coal. Ii. Insights From Organic Geochemical And Multivariate Statistical Analysis, Zhiwen Han, Michael A. Kruge

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

Petrographic and megascopic criteria have traditionally been used as the basis for the classification of torbanite and cannel coal. For this study, it was hypothesized that modern analytical organic geochemical and multivariate statistical techniques could provide an alternative approach. Towards this end, the demineralized residues of 14 torbanite (rich in Botryococcus-related alginite) and cannel (essentially, rich in organic groundmass and/or sporinite) coal samples were analyzed by pyrolysis-gas chromatography/mass spectrometry (Py-GC/MS). Cluster analysis performed on the Py-GC/MS data clearly distinguished the torbanite from the cannel coal, demonstrating a consistency between the chemical properties and the petrographic composition. All the torbanite …

Molecular Organic Geochemistry Of New York Bight Sediments. Sources Of Biogenic Organic Matter And Polycyclic Aromatic Hydrocarbons, Michael A. Kruge

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

As part of a multidisciplinary evaluation of the environmental impact of waste disposal in the New York Bight, a preliminary effort was undertaken to assess the molecular geochemistry of its sedimentary organic matter (OM). For this initial phase of the study, samples were taken from two New York Bight cores collected outside the area of known dumping [in Sandy Hook Bay, NJ], to establish the environmental context for future work on sediments from within dumpsite zones. The method employed was flash pyrolysis-gas chromatography/mass spectrometry (Py-GC/MS), which is an organic microanalysis technique suitable for solid samples, in this case dried, raw …

Some Aspects Of The Adsorption Of A Lennard-Jones Gas On A Rough Surface, Douglas Henderson, Pawel Bryk, Stefan Sokolowski

Faculty Publications

We study the adsorption, including wetting, of a Lennard-Jones gas on a rough surface consisting of rough layer on a smooth substrate with which the gas interacts via a 9-3 potential. The rough layer is two molecular diameters thick and consists of a disordered quenched matrix of hard spheres. As well as interacting with the other matrix spheres by the hard-sphere potential, the matrix molecules interact with the gas molecules by the hard-sphere potential. Hence, on average, the degree to which the gas molecules can approach the substrate depends only on the density of the matrix layer. The density of …

New Polyether Toxins From Shellfish And Marine Phytoplankton: Isolation Studies And Development Of Analytical Methods, Alan G. Bishop

Theses

There are three classes of polyether toxins responsible for Diarrhetic Shellfish Poisoning (DSP) world-wide. The causative toxins are okadaic acid (OA) and derivatives (DTXs), pectenotoxins (PTXs) and yessotoxins (YTXs). The origin of these toxins are phytoplankton from Dinophysis or Prorocentrum spp. OA has been demonstrated for most outbreaks in Europe and more recently a new isomer DTX-2 has been reported in Ireland.

Marine phytoplankton biomass samples consisting predominantly of Dinophysis acuta, were acquired using a large double plankton net from waters off the South-west coast of Ireland. Analysis of unialgal samples using high performance liquid chromatography (HPLC) with fluorescence and …

Characterisation And Optimisation Of Gypsum Crystallization, Catherine H. Shannon

Theses

Gypsum is produced as a by-product during the citric acid production process at ADM Ringaskiddy. The particle size and filterability of the gypsum has a critical bearing on the overall citric acid production rate. Prior to August 1996, research in the area of gypsum crystal optimisation at ADM had concentrated on the application of vortex mixing to perform the gypsum formation reaction. While the gypsum crystals produced with vortex mixing were found to be desirably clear of microcrystalline gypsum, the crystals were considerably smaller and more difficult to filter and wash. This research project sought to retain the advantages conferred …

Optimisation Studies In A Batch Pharmaceutical Company, Sarah Fitzgerald

Theses

This thesis outlines a collaborative project between industry and academia based on a short term research contract.

In the past in Eli Lilly, process optimisation in a multi-purpose, modular building had been mainly confined to equipment commissioning and new product development. It was necessary to embark upon an exercise to develop an optimisation programme m order to meet the increased requirements and demands of the building. Increased market demands, through the introduction of over-the-counter (OTC) drugs, and the demand for cycle time reduction through the expiry of existing patents, made the need for optimisation inevitable.

The purpose of this thesis …

X-Ray Absorption, Neutron Diffraction, And Mössbauer Effect Studies Of Mnzn-Ferrite Processed Through High-Energy Ball Milling, D. J. Fatemi, V. G. Harris, Mingxing Chen, Satish K. Malik, William B. Yelon, Gary J. Long, Amitabh Mohan

Physics Faculty Research & Creative Works

MnZn-ferrite has been prepared via high-energy ball milling of elemental oxides MnO, ZnO, and α-Fe₂O₃. Neutron diffraction measurements suggest a high density of vacancies in a spinel structure. The spinel phase appears to comprise 99.8 wt % of the material in the sample milled for 40 h, with the remainder attributable to unreacted α-Fe₂O₃. The x-ray absorption near-edge structure was analyzed to provide an understanding of the charge state of the constituent Fe ions. This analysis reveals about 2/3 of Fe cations to be trivalent, increasing to about 3/4 after a 5 …

1-Hydroxyethyl-2,2′-Biimidazole, Geng Lin, Harvest L. Collier, Russell G. Baughman

Chemistry Faculty Research & Creative Works

The two imidazole rings in the title compound, C₈H₁₀N₄O, are almost coplanar, having an angle of 2.3 (2)° about the C-C bond connecting the rings. the conformation adopted is such that the nitrogen substituents (-H and -CH₂CH₂OH) are in a trans orientation. the molecules are connected by intermolecular O-H. . .O and N-H. . .N hydrogen bonds to yield an arrangement of pairs of molecules reminiscent of side-by-side stacks of crinkled ribbon.

Soft X-Ray Photochemistry At The L₂,₃-Edges In K₃[Fe(Cn)₆], [Co(Acac)₃] And [Cp₂Fe][Bf₄], David Collison, Catherine David Garner, Catherine M. Mcgrath, J. Fred Willem Mosselmans, Mark D. Roper, Jon M. W Seddon, Ekkehard Sinn, Nigel A. Young

Chemistry Faculty Research & Creative Works

Soft X-ray photoreduction has been observed in K3[Fe(CN)6], [Co(acac)3] and [Cp2Fe][BF4].

Thermal Characterization Of Pmma Thin Films On Silica Using Modulated Differential Scanning Calorimetry, Crystal E. Porter, Frank D. Blum

Chemistry Faculty Research & Creative Works

The number of studies of thin polymer films has increased over recent years as technological processes incorporate the use of nanomaterials. An enhanced understanding of these films would enable us to predict bound-polymer behavior and thus improve the efficiency of processes and the quality of products. This is especially true as the thickness of the films approach molecular dimensions. The glass transition temperature of a polymer is one of the most important properties for characterization because it indicates how the polymer might perform macroscopically. when a polymer is confined, such as one the surface of a substrate, its behavior is …

Preparation Of Phase Homogeneous Mn-Zn Ferrite Powder By Spray Pyrolysis, Xinyu Zhao, Baicun Zheng, Hongchen Gu, Chunzhong Li, Shi C. Zhang, P. D. Ownby

Materials Science and Engineering Faculty Research & Creative Works

Two kinds of aqueous precursor solutions are used to synthesize Mn-Zn ferrite powders: (i) nitrate (NO) precursor-derived from solutions of Mn(NO₃)₂, Zn(NO₃)₂, and Fe(NO₃)₃; and (ii) acetate (AC) precursor-derived from solutions of Mn(CH₃COOO)₂, Zn(CHCH₃COOO)₂, and Fe(NO₃)₃. The composition of the powders synthesized from the precursor AC is very uniform, whereas powders derived from the precursor NO have Mn and Zn segregated on the particle surfaces. In addition, the powders synthesized from precursor AC are solid spherical …

Trans-Resveratrol Inhibits Calcium Influx In Thrombin-Stimulated Human Platelets, Yuliya Dobrydneva, Roy L. Williams, Peter F. Blackmore

Chemistry & Biochemistry Faculty Publications

1 The phytoestrogenic compound trans-resveratrol (trans-3,5,4'-trihydroxystilbene) is found in appreciable quantities in grape skins and wine. It has been shown that both products rich in trans-resveratrol and pure trans-resveratrol inhibit platelet aggregation both in vivo and in vitro. However the mechanism of this action still remains unknown.

2 An essential component of the aggregation process in platelets is an increase in intracellular free Ca²⁺ ([Ca²⁺]_i). Ca²⁺ must enter the cell from the external media through specific and tightly regulated Ca²⁺ channels in the plasma membrane. The objective …

Impedance Characteristics Of Conducting Polypyrrole-Poly(Ethylvinylether) Graft Films, E. Kalaycioğlu, Levent Toppare, T. Grchev, M. Cvetkovska, Y. Yağci

Turkish Journal of Chemistry

Impedance characterization of graft copolymers of poly(2-(N-pyrrolyl)ethylvinylether) and polypyrrole (doped with BF_4^-) was elucidated in comparison with pure polypyrrole doped with BF_4^-.

^{13}C-And ^{31}P-Nmr Study Of Tetracarbonylbis(Diphenylphosphino)Alkanemetal(0) Complexes Of The Group 6 Elements, Zahi̇de Özer, Sai̇m Özkar

Turkish Journal of Chemistry

Tetracarbonylbis(diphenylphosphino)alkanemetal(0) complexes of the general formula M(CO)_4[(C_6H_5)_2P (CH_2)_nP(C_6H_5)_2] (M: Cr, Mo, W; n: 1, 2, 3) were synthesized from the reaction of M(CO)_4(\eta^{2:2}-1,5-cyclooctadiene) with the appropriate ligand and characterized by means of IR and NMR (^{13}C and ^{31}P) spectroscopy. Spectroscopic data shows that two phosphorus atoms in the complexes are identical and occupy two cis-coordiantion sites in a pseudo-octahedral coordination sphere of the metal. The comparative study of the coordination shift and the ^{31}P-^{13}C coupling constant reveals that two carbonyl groups trans to one of two phosphorus atoms in the diphosphine ligand are shifted toward the lower magnetic field more …

An Efficient Acetylation Of Primary And Secondary Aliphatic Alcohols With Acetic Anhydride In The Presence Of Graphite Bisulphate, Hasan Seçen, A. Hami̇t Kalpar

Turkish Journal of Chemistry

In cyclohexane, thirteen examples of primary and secondary aliphatic alcohols were easily converted to the corresponding acetate derivatives within a short time, ranging from 5 min to 2.5 h, and in good yields close to 90%, using acetic anhydride as reagent and graphite bisulphate as an efficient catalyst.

The Effect Of Phosphate Ions (Po^{3-}_4) On The Corrosion Of Iron In Sulphat Solutions, Günay Kilinççeker, B. Yazici, M. Erbi̇l, H. Gali̇p

Turkish Journal of Chemistry

The effect of phosphate ions on the corrosion of iron in sulphate solutions at different temperatures (293 K, 313 K, 333 K and 353 K) and at different pH (pH=2.1, 7.2 and 12.3) values was investigated. The electrochemical three-electrode technique was employed. The cathodic and anodic current-potential curves were obtained by strating from the corrosion potential measured against SCE and polarizing it first in cathodic and then in anodic direction. The results obtained indicate that at high pH (pH=7.2 and 12.3) SO^{2-}_{4}+PO^{3-}_{4}ions together reduce the corrosion rate of iron to a greater extent than SO^{2-}_{4} alone. At low pH (pH=2.1), …

The Revovery Of Copper And Cobalt From Oxidized Copper Ore And Converter Slag, Berri̇n Zi̇yadanoğullari, Recep Zi̇yadanoğullari

Turkish Journal of Chemistry

The aim of this study was to develop a method for obtaining copper and cobalt from oxidized copper ore and converter slag. In order to convert the copper and cobalt into sulfate compounds the main step was to roast the samples obtained by sulfurization and transfer the samples into solution. First the oxidized copper ore was roasted, followed by the mixture of converter slag and oxidized copper ore. Since the levels of copper and cobalt were low, the sulfurization process was carried out under autoclave conditions. The samples obtained were roasted. The yields of copper and cobalt passed into the …

The Application Of A Scanning Electron Microscope With An Energy Dispersive X-Ray Analyser (Sem/Edxa) For Gunshot Residue Determination On Hands For Some Cartridges Commonly Used In Turkey, Kezban Gökdemi̇r, Ertan Seven, Yüksel Sarikaya

Turkish Journal of Chemistry

The primers of the 10 commonly used cartridges in Turkey, MKE MP5, GECO Luger, FC Luger, WIN Luger, S&B Luger, WRA Luger, FNB Luger, P Luger, KF 80 Luger and SINTOX ACTION Luger were first examined with a SEM/EDXA. Then these cartridges used in test firings and the GSR on the hands of the test shooters was collected using adhesive-coated sample stubs and examined with a SEM/EDXA. Samples were scanned by viewing the BSE (Backscattered electron) image and, brighter and spherical particles were located, and then analysed with an EDXA. The elemental compositions of the GSR of the studied cartridges …

Electrochemical Preparation And Sensor Properties Of Conducting Polyaniline Films, M. Özden Eki̇nci̇, Ergün Eki̇nci̇, A. Ersi̇n Karagözler

Turkish Journal of Chemistry

A polyaniline-glucose oxidase electrode was prepared by the electrochemical polymerization of aniline on a Pt electrode that was already pre-adsorbed by the enzyme (glucose oxidase) at a potential of 1 V vs. Ag/AgCl. Then, the amperometric responses of the enzyme electrode to the electroactive hydrogen peroxide formed by the enzyme-catalyzed reaction of the substrate (glucose) with oxygen were measured at a potential of 0.7 V in PBS solution. The effects of electrochemical polymerization (i.e., concentrations of monomer and electrolyte, film thickness) and amperometric measurement parameters (i.e. pH, temperature) on the amperometric response characteristics to glucose of the resultant enzyme electrode …

Transition Metal Compound Mediated Reduction Of \Alpha-Amino Acids To 1,2-Amino Alcohols With Nabh_4 In Water, Ayhan S. Demi̇r, İdris M. Akhmedov, Özge Şeşenoğlu

Turkish Journal of Chemistry

A new efficient and cost-effective method for the preparation of 1,2-amino alcohols is described. The reactions of amino acids with NaBH_4 in the presence of NiCl_2 or MoO_3 in water give 1,2-amino alcohols in high yield. When optically pure amino acids were used, optically pure 1,2-amino alcohols were obtained.

Synthesis And Properties Of The Phthalocyanines Containing Eugenol (4-Allyl-2-Methoxyphenol), Erbi̇l Ağar, Selami̇ Şaşmaz, Ayşen Ağar

Turkish Journal of Chemistry

New metal-free and metallophthalocyanines (M=Cu(II), Ni(II), Co(II), Zn(II) and Fe(II)) substituted with eugenol (4-allyl-2-methoxyphenol) from 1,2-dicyano-4-nitrobenzen are described. Cyclotetramerization of the substituted phthalonitrile leads to a product very soluble in common organic solvents. The characterization of the compounds was accomplished by elemental analysis, ^1H NMR, ^{13}C NMR, IR and UV-VIS spectral data.