Chemistry Commons^™

Exploring The Effects Of Different Classroom Environments On The Learning Process. Synthesis Of Thiazole-Linked Porous Organic Polymers For Co2 Separation And Nitro-Aromatics Sensing., Davide D'Urbino

Theses and Dissertations

When attempting to study the learning process of undergraduate chemistry student, the classroom and any interaction that take place within it constitute the social context of interest. By studying how different approaches can foster different classroom environments, it is possible to approach course design from an informed and scientifically sound perspective. Thus, it becomes necessary to identify and quantify the factors that have a positive or negative effect on the classroom environment. Social comparison concerns, comfort levels and self-efficacy have been shown to be social factors that affect each other as well as the learning process and have therefore been …

Investigations Into Structure And Properties Of Atomically-Precise Transition Metal-Chalcogenide Clusters Of Crte And Ligated Cr6te8(Pet3)6, Anthony F. Pedicini

Theses and Dissertations

The complete understanding of a clusters electronic structure, the primary mechanisms for its properties and stabilization is necessary in order to functionalize them for use as building blocks within novel materials. First principle theoretical studies have been carried out upon the electronic properties of Cr_xTe_y (x = 1 – 6, y = 0 – 8, x + y ≤ 14), as well as for the larger triethylphosphine (PEt₃) ligated cluster system of Cr₆Te₈(PEt₃)₆. Together, we aim to use the information garnered from the smaller clusters to address …

Polymer Grafted Nanoparticles For Designed Interfaces In Polymer Nanocomposites, Mohammad Mohammadkhani

Theses and Dissertations

This dissertation presents the design, synthesis, and characterization of polymer nanocomposite interfaces and the property enhancement from this interface design. Through the use of reversible addition fragmentation chain transfer (RAFT) polymerization for the grafting of polymer chains to silica nanoparticles, the surface of silica nanoparticles can be manipulated to tune the properties of nanocomposites by controlling the interface between the particles and the polymer matrix.

In the first part of this work, compatibility of 15 nm silica nanoparticles grafted with different alkyl methacrylates with linear low density polyethylene was investigated. SI-RAFT polymerization of hexyl, lauryl, and stearyl methacrylate on silica …

Disinfection By-Products: Formation In Pool Water And The Role Of Iodinated Medical Imaging Compounds As A Potential Precursor In The Formation Of Iodo-Dbps, Christina Marie Joseph

Theses and Dissertations

Disinfection by-products (DBPs) are the unintended consequence of using chemical disinfectants to kill pathogens in water. 1-11 They are formed from the reaction between disinfectants and natural organic matter (NOM), anthropogenic contaminants, and bromide/iodide present in the raw source water. DBPs are cause for concern because studies have found them to be toxic.11-16 This research focuses on identifying and studying the formation of DBPs. Specifically, the presence of DBPs in chlorinated pool water and tap water from Barcelona, Spain was studied to better understand which DBPs are formed in the pool as compared to those that enter the pool from …

Structural And Functional Studies Of Proteins From The Agricultural Pests Tetranychus Urticae And Aspergillus Fumigatus, Caleb Schlachter

Theses and Dissertations

Agricultural pests are a worldwide problem and cause billions of dollars in crop loss. In the United States alone, an estimated $40 billion USD is lost per year due to insecticide resistance [1]. Studied here are proteins (potentially new pesticide targets) from the agricultural pests Tetranychus urticae and Aspergillus fumigatus. T. urticae, or twospotted spidermite, is a polyphagous pest, and three proteins from this pest, a cyanase, a glutathione S-transferase and an intradiol ring-cleavage dioxygenase are described [2]. Cyanase is involved in the conversion of bicarbonate and cyanate, a toxic self-defense metabolite produced by plants, into ammonia and carbon dioxide. …

Metal-Organic Frameworks: A Versatile Platform For Light Harvesting And Energy Transfer, Derek E. Williams

Theses and Dissertations

The global energy demand is undoubtedly rising at an alarming rate, and as a result, humanity faces the problem of finding alternative energy supplies. Approximately 80 percent of the world’s energy currently comes from fossil fuels, and only a small fraction, 10 percent, from renewable energy sources. The study of energy transfer (ET) processes is a rapidly developing area of interest due to the necessity for more efficient photovoltaic devices, which are crucial to meet the growing energy demand. A promising approach to further advance organic photovoltaics is to precisely arrange many lightharvesting chromophores (e.g., porphyrin derivatives), attainable through a …

Mechanistic Studies Of Nucleic Acid Chaperone Activities Of Retroviral Nucleocapsid Protein, Lichao Sun

Theses and Dissertations

In this dissertation, I have used single molecule Fluorescence Resonance Energy Transfer (sm-FRET), as a nanoscale spectroscopic ruler to gain quantitative, molecular-level understanding about the kinetics and mechanism of NC-chaperoned TAR sequence rearrangements. Firstly, I have resolved the complex kinetics and underlying reaction pathways of TAR sequence annealing in the presence of HIV-1 NC over a broad NC concentration by performing the time-resolved sm-FRET measurements in a unique aggregation-free environment. I have further gained the insights that the NC-induced secondary structural changed of TAR hairpins modulate the annealing pathways and consequently affect the overall kinetics of the TAR sequence annealing. …

Assessing Aberrant Glycosylation With Synthetic Lectins To Detect And Stage Prostate Cancer, Anna Veldkamp

Theses and Dissertations

Aberrant glycosylation takes place during the onset of cancer and throughout the progression of the disease allowing certain glycans to serve as biomarkers1. Boronic acid functionalized synthetic lectins (SLs) have been shown to bind selectively and crossreactively to certain glycoproteins through covalent yet reversible interactions between the boronic acids and 1,2- or 1,3-diols found on saccharides2. This project focuses on 1) data acquisition optimization of an existing SL array; 2) the identification, isolation, and characterization of new SLs that interact with proteins and glycoproteins targeting the prostate and prostate cancer; and 3) the utilization of new SLs in cross-reactive sensor …

Characterization Of The Suf Fe-S Pathway In Escherichia Coli, Naimah Bolaji

Theses and Dissertations

Iron is an essential transition metal required by almost all organisms for use as a cofactor in many metabolic processes such as respiration and photosynthesis. Iron can be combined with elemental sulfur to form an iron-sulfur (Fe-S) cluster. In bacterial pathogens, Fe-S cluster cofactors carry out critical functions and the Fe-S cluster biogenesis pathway is essential for their survival. In E. coli, the Suf pathway assembles Fe-S clusters under conditions of iron starvation and oxidative stress. While some mechanistic details of the Fe-S cluster biogenesis have been well-characterized, the process of in vivo iron donation remains unclear. Iron storage proteins …

Investigation Of Iron(Ii) Autoxidation Rate And Iron Mediated Geochemical Production Of Reactive Oxygen Species At Oxic-Anoxic Interfaces, Dewamunnage Muditha Chathurangani Dias

Theses and Dissertations

Biogeochemical cycles in ecosystems regulate the flow of energy between reduced species (typically carbon compounds) and a variety of oxidants via both biotic and abiotic reactions. A key class of chemical compounds that can link these cycles through abiotic pathways are Reactive Oxygen Species (ROS). The production of ROS via photochemical pathways is well known. More recently, the non-photochemical production of ROS via the one electron oxidation of ferrous iron (Fe(II)) by dioxygen (O2) has been detected in a range of environments. The oxidation of Fe(II) initiates a pathway that generates an array of ROS as Fe is cycled between …

Chemical Sensing In Harsh Environments By Multivariate Optical Computing, Christopher Michael Jones

Theses and Dissertations

Multivariate optical computing (MOC) is a compressive sensing technique for which an analyte concentration is detected in an interfering mixture by direct detector output. The detector measures the dot product of a linear regression vector with a sample spectrum, as an analog optical computation. The computation is accomplished with the multivariate optical element (MOE), to which the optical regression vector is encoded as a transmission pattern. As a spectrum of light emanates from a sample and passes through the MOE, the dot product naturally occurs when light strikes the detector. The MOC platform allows a simple, robust, and direct measurement …

Sustainable Polymeric Materials Derived From Plant Oils: From Synthesis To Applications, Xinzhou Zhang

Theses and Dissertations

In this thesis, monomers and polymers derived from high oleic soybean oil are investigated. The properties of these monomers and polymeric materials are characterized and discussed. Chapter 1 describes an overall background of bio-based resources, monomers, polymers, and their potential impact on society. The overall objective of my research is described. Chapter 2 outlines a new large-scale preparation of a soybean based monomer and the use of this monomer in thermoplastic elastomers. The synthetic procedures and characterizations of the monomers and polymers are discussed. In Chapter 3, potential applications of soybean oil monomers in both supramolecular polymers and poly(phosphoester)s are …

Targeting Aberrant Glycosylation In Colon And Prostate Cancer With An Improved Synthetic Lectin Array, Tanya Hundal

Theses and Dissertations

Cancers of the colon and prostate, though treatable, necessitate early detection to improve patient outcomes. Current diagnostics, (visual methods or biopsies) besides being invasive, are subjective towards interpretation, thus decreasing accuracy. Alternatively, blood-based tests involving measuring of specific biomarkers (like CEA and PSA for colon and prostate cancers, respectively) are associated with high false-positive rates and are more useful for monitoring post-treatment patient health, thus driving efforts to identify better screening and diagnostic techniques.

Abnormal glycosylation of integral membrane and secreted glycoproteins is known to take place at the onset of many diseases, including cancer, and presents as the over, …

Preparation And Evaluation Techniques Of Porous Materials And Mixed Matrix Membranes For Targeted Co2 Separation Applications, Tsemre Tessema

Theses and Dissertations

The use of porous sorbents for physisorptive capture of CO₂ from gas mixtures has been deemed attractive due to the low energy penalty associated with recycling of such materials. Porous organic polymers (POPs) have emerged as promising candidates with potential in the treatment of pre- and post- fuel combustion processes to separate CO₂ from gas mixtures. Concurrently, significant advances have been made in establishing calculation methods that evaluate the practicality of porous sorbents for targeted gas separation applications. However, these methods rely on single gas adsorption isotherms without accounting for the dynamic gas mixtures encountered in real-life applications. …

Development Of General Purpose Liquid Chromatography Simulator For The Exploration Of Novel Liquid Chromatographic Strategies, Lena N. Jeong

Theses and Dissertations

The method development process in liquid chromatography (LC) involves optimization of a variety of method parameters including stationary phase chemistry, column temperature, initial and final mobile phase compositions, and gradient time when gradient mobile phases are used. Here, a general simulation program to predict the results (i.e., retention time, peak width and peak shape) of LC separations, with the ability to study various complex chromatographic conditions is described. The simulation program is based on the Craig distribution model where the column is divided into discrete distance (Δz) and time (Δt) segments in a grid and is …

Preparation And Application Of Catalysts For The Stereospecific Reduction And Photooxygenation Of Olefins In Continuous Operations: A Novel Method For The Production Of Artemisinin, Daniel C. Fisher

Theses and Dissertations

Over the last two centuries, the discovery and application of catalysts has had a substantial impact on how and what chemicals are produced.Given their broad significance, our group has focused on developing new catalyst systems that are recoverable and reusable, in an attempt to reduce concomitant costs.

Our efforts have centered on constructing a recyclable chiral heterogeneous catalyst capable of effecting asymmetric hydrogenations of olefins with high stereoselectivity. A class of phosphinoimidazoline ligands, developed by researchers at Boehringer-Ingelheim, known as BIPI ligands, have proven efficacious in the asymmetric reduction of alkenes. However, these chiral ligands are homogeneous and coordinated to …

Separation Of Transition And Heavy Metals Using Stationary Phase Gradients And Chelation Thin Layer Chromatography / Evaluation Of The Effectiveness Of Pogil-Pcl Workshops, Stacy L. Stegall

Theses and Dissertations

Gradient surfaces exhibit a variation in functionality along the length of the surface. One method for preparing gradients is controlled-rate infusion (CRI). In Part 1 of this work, CRI was used to prepare gradients for the purpose of separating transition and heavy metals. Initial work on this project was focused on controlling the retention of the metal ions by varying the number of amine groups, aminoalkoxysilane concentration, and the infusion time. The retention factors of four metal ions varied predictably with increasing number of amine groups, increasing aminoalkoxysilane concentration, and increasing infusion time, producing small but useful changes in the …

Synthesis And Characterization Of Metallic Nanoparticles For Catalytic Applications, Sarah Smith

Theses and Dissertations

In recent years, research has focused on reducing the cost of catalysts in a variety of ways including using less expensive materials, improving the synthetic method, and increasing the catalytic activity, recovery, and recyclability. Typically with nanoparticles, the size, shape, composition, and surface coating have an effect on catalytic activity.^1-2 In this work, we focused on reducing the cost of precious metal based catalysts by altering the synthetic methods.

One way to lower the cost of synthesizing precious metal nanoparticles is by debasing the precious metal with a second cheaper more abundant metal. CuPd nanoparticles were synthesized in oleylamine …

Effect Of Charged Species On The Gradient Properties, Kayesh Ashraf

Theses and Dissertations

Surface chemical gradients are materials that exhibit continuous, gradually varying chemical or physical properties along and across the length of a substrate. As a result, each point on the gradient surface can represent an individual sample. They are broadly classified as chemical and physical gradients depending upon the properties that the gradient exhibits. A physical gradient involves a continuous variation of physical properties such as surface roughness and film porosity on the micrometer scale. Chemical gradients involve a gradual variation of chemical properties such as polarity, acidity and basicity, etc. Such gradients have found various applications in cell adhesion, nanoparticle …

Sol-Gel Chemistry: An Advanced Technique To Produce Macroscopic Nanostructures Of Metal And Semiconductor Colloids, Lamia Nahar

Theses and Dissertations

The fascinating physical properties that arise in materials limited to dimensions of 1-100 nm have gained noteworthy interest from the scientific community. Accordingly, there has been a lot of attention paid to the synthesis of discrete nanoparticles (NPs) and they are being investigated for a range of advanced technologies. Nonetheless, efficient use of nanomaterials in device applications require them to be assembled into solid state macro-structures while retaining their unique, nanoparticulate properties. To date, most commonly investigated assembling techniques include: covalent coupling of NPs surface groups, control evaporation of the solvent to produce ordered supercrystals or non-ordered glassy films, and …

A Novel Synthesis And Subsequent Decyclization Of Iminothiozolidinones: Expansion Of Thiourea Chemistry For Biological Applications, Constance D. Franklin

Theses and Dissertations

Small molecule synthesis has become a valuable tool in the study of biological systems. Biologically active compounds can be designed based on well-characterized endogenous systems or they can be found through the screening of large libraries of small molecules. This work involves the development of a small library of cyclic thiourea-based small molecules by use of an unreported synthetic pathway. Briefly, parent thioureas were cyclized by reaction with bromoacetyl bromide, and one or two isomeric heterocycles were found to form. Further studies indicated that the reaction could be easily manipulated by temperature or solvent to effectively control the product distribution. …

Control Of Matrix Metalloproteinases In A Periodontitis Model: Molecules That Trigger Or Inhibit Mmp Production, Catalina Matias Orozco

Theses and Dissertations

In periodontitis, there is a disruption in the homeostasis of the oral microbiome by peridontopathogenic bacteria. However, while bacteria is essential for periodontitis to occur, the severity, pattern and progression of the disease is not solely determined by the microbial burden, and in fact has a lot to do with the overwhelming host inflammatory response. The response can vary even in two individuals with similar periodontopathogenic profiles. The host response leads to extracellular matrix (ECM) destruction, loss of attachment, alveolar bone resorption and eventually, edentulism. The host's reaction is orchestrated by proinflammatory cytokines and chemokines and matrix metalloproteinases (MMPs). MMPs …

Phytotoxicity Of Silver Species To Egeria Densa And Applications To Phytoremediation, Leonard James Bernas

Theses and Dissertations

Silver species pose a significant threat to aquatic ecosystems because the use of silver nanoparticles (AgNps) for industrial applications is significantly increasing, as are discharges into waterways. The effects have only been studied on select fish and aquatic plants, so more research is needed to understand the risks associated with silver species in the environment. Egeria densa (E. densa, also known as Elodea densa), a common freshwater submerged macrophyte, was exposed to 0-1.25 ppm silver cations and 2 and 15 nm AgNps in an aqueous environment for 7 days. E. densa was chosen for this study because it is a …

Investigation Of Dynamic Biological Systems Using Direct Injection And Liquid Chromatography Mass Spectrometry, Adam Clayton Swensen

Theses and Dissertations

In biological systems, small changes can have significant impacts. It is, therefore, very important to be able to identify these changes in order to understand what is occurring in the organism. In many cases, this is not an easy task. Mass spectrometry has proven to be a very useful tool in elucidating biological changes even at a very small scale. Several different mass spectrometry based techniques have been developed to discover and investigate complex biological changes. Some of these techniques, such as proteomics, have been through years of development and have advanced to the point that anyone can complete complex …

Structural Analysis Of Cell Signaling Complexes, Takuma Aoba

Theses and Dissertations

Bardet-Biedl syndrome (BBS) is a rare genetic disease that causes retinal degradation, obesity, kidney dysfunction, polydactyly, and other cilium-related disorders. To date, more than 20 BBS genes, whose mutants cause BBS phenotypes, have been identified, and eight of those (BBS1-2, 4-5, 7-9, and 18) are known to form the BBSome complex. Recent studies have revealed that the BBSome is closely involved in the trafficking of signaling proteins in the primary cilium. Mutations in BBS genes are highly pathogenic because trafficking in the primary cilium is not fully functional when BBS mutations impair assembly of the BBSome. However, the functional links …

Fluorescent Graphene For Cancer Cell Targeting And Detection, Rabab Nadeem Hamzah

Theses and Dissertations

The highest cause of death and illness around the world is cancer, and the range of cancers continues to increase. Breast cancer is the second leading cause of cancer death in women today, mainly in older women (over 40 years), younger women can also be affected, especially those with a genetic predisposition. Early detection of breast cancer is needed in order to limit the risk of this disease and make significant improvements in the rate of cure. Combining clinical trials with bionanotechnology for the diagnosis and treatment of cancer has received considerable attention in the last several years. Different nanomaterials …

Synthesis And Characterization Of Polycyclic Aromatic Hydrocarbon ( Pah )-Porphyrin Hybrids, Ruixiao Gao

Theses and Dissertations

Carbaporphyrins are porphyrin analogs where one or more pyrrole units are replaced with a carbocyclic ring. Benziporphyrins are porphyrin analogues with a 1,3-phenylene unit replacing one of the pyrrole subunits. Because of cross-conjugation, benziporphyrins are not aromatic species. However, protonation of benziporphyrins can afford some aromatic characteristics. Although the synthesis of many examples of monocarbaporphyrins have been successfully executed, no examples of porphyrinoids with pyrene subunits have been prepared. Pyrene-containing porphyrinoids, which have been named as pyreniporphyrins, are theoretically significant molecules that provide insights into the aromaticity and reactivity of porphyrinoid systems.

In this thesis, two projects were conducted to …

Studies Toward Yaku'amide A And Synthesis And Applications Of Bulky Α,Β-Dehydroamino Acids, Jintao Jiang

Theses and Dissertations

Yaku'amide A shows a unique inhibitory profile against a series of 39 human cancer cell lines (JFCR39). In our efforts to synthesize yaku'amide A, we have optimized our regioselective base-free aminohydroxylation method with a series of nitrogen sources, developed a chiral reagent-mediated aminohydroxylation strategy and chemoselective deprotections of the resulting aminohydroxylation product, and explored a stereospecific E2 dehydration and O-N acyl transfer sequence. In addition, we have prepared the right-hand tetrapeptide and the NTA subunit. For our bulky α,β-dehydroamino acids project, we have developed strategies to incorporate α,β-dehydroamino acids such as ΔVal and ΔEnv into small synthetic peptides via Solid …

Computational Studies On Mechanisms And Reactivity Of Mercury And Cobalt Organometallic Reactions, Jack Terrell Fuller

Theses and Dissertations

Density Functional Theory (DFT) is a powerful tool for treating large organometallic structures efficiently and accurately. DFT calculations on the Hg-catalyzed oxidation of methane to methyl bisulfate in sulfuric acid suggest the lowest energy pathway involves a closed-shell electrophilic C–H activation mechanism coupled with metal alkyl reductive functionalization and oxidation by SO3. Comparison to Tl, Zn, and Cd suggests that Hg is unique in its ability to catalyze this set of reaction steps. Comparison to K2S2O8 highlights the selectivity of this C–H activation reaction as opposed to radical conditions. In contrast, DFT calculations indicate that CoIII(TFA)3 oxidizes methane through a …

Synthesis And Biological Evaluation Of Small Molecule Inhibitors Of Bmpr1b, Paulo Andre Machicao Tello

Theses and Dissertations

Methods for preparing an array of potential small molecule inhibitors of Bone Morphogenetic Protein Receptor 1b (BMPR1b) are described. Target molecules were prepared from two general classes: (1) N9-aryl-N6-ureidoadenines, and (2) dicarbamyl iodoacetamides. Recent data from the Peterson lab indicated that both classes might bind to BMPR1b and thus inhibit this key receptor. Docking studies performed using Sureflex Dock suggested the N9-aryl-N6-ureidoadenines would bind to the active site of BMPR1b. In addition antiproliferative activities of dicarbamyl iodoacetamides previously synthesized in the Peterson lab pointed to this moiety as an attractive target for structure activity relationship (SAR) development. Compounds were prepared …