Chemistry Commons^™

Synthesis And The Genetic Encoding Of Novel Lysine Post-Translational Modifications, Sahan A. Galbada Liyanage

Theses and Dissertations

Post-translational modifications (PTMs) play a significant role in regulating cell signaling and regulating the inner cellular environment. The study of PTMs and their primary biological functions is critical for the development of new medicines targeting the pathways and biomolecules responsible for the PTMs.

Previous studies revealed the direct coupling of the β -hydroxybutyryl lysine (K_BHB) modification with the gene expression. K_BHB in histone proteins links metabolism to epigenetics and gene expression and enables to study in-depth, how cell metabolism controls the gene expression and vice versa. Similar novel histone modification, K_Lac, attracts a special interest …

Open Ensemble Modeling Of Confined Electrolytes, Serban Zamfir

Theses and Dissertations

The main purpose of my study was to work towards better understanding the behavior of salt solutions in nanoconfinements and its causes. To this end I have developed an in-house C++ code that can perform notoriously challenging open ensemble Monte Carlo molecular simulations, calculate relevant thermodynamic and extract structural information about each system. I use this code in my first project which deals with the intrusion/extrusion of aqueous NaCl into a nanopore open to a pressurized bulk environment. For my second project, I study the effect of explicitly accounting for intramolecular polarization and accompanying multi-body interactions on the uptake, structure, …

Synthesis And Design Of Novel Polymer Grafted Nanoparticles Relevant To Drug Delivery Vehicles For Biomedical Application, Maan Abduldiyem Hassan Al-Ali

Theses and Dissertations

The modification of inorganic nanoparticles with organic polymer chains has become a significant field of study for the engineering of advanced nanocomposite materials. This dissertation presents the design, synthesis, and characterization of novel polymer grafted silica nanoparticles as new strategies to combat bacterial resistance. Described herein is the synthesis of monomers that have been graft polymerized onto silica nanoparticles that can be used as a delivery drug vehicle for biomedical applications. The polymerization of these monomers was performed via reversible addition-fragmentation chain transfer (RAFT) polymerization. The molecular design of the RAFT agents that are attached to the surfaces of the …

Heparan Sulfate. A Ligand For Coordination Compounds., Eric Ginsburg

Theses and Dissertations

Heparan sulfate (HS), a type of glycosaminoglycan (GAG), has been identified as a ligand for interactions with polynuclear platinum complexes (PPCs). HS is involved in numerous biological processes, and often considered to be extracellular DNA. PPCs interact with HS through the formation of a “sulfate clamp”, where multiple anionic sulfate groups cluster around the cationic PPC. The masking of HS results in the inhibition of enzymatic activity, protein-HS interactions, and other biological processes. PPCs use HS proteoglycans as an method of cellular internalization. By targeting sulfated-GAGs, PPCs can offer precision medicine not currently observed with the FDA approved platinum therapies. …

Electrocatalytic Cathodes For Advanced Lithium–Sulfur Batteries, Ahmed Abdelkader

Theses and Dissertations

Energy demands are anticipated to increase in the next decades with the consumption of fossil fuels predicted to grow from the current levels. This will place an enormous burden on the non–renewable reserves of our energy sources and add to the preexisting environmental crisis with the emission of greenhouse gases like carbon dioxide (CO₂). Electrical energy storage (EES) is considered one of the most crucial needs of modern society to circumvent this crisis and potential applications include electric vehicles and devices, as well as storage systems for solar and wind sources.Lithium–ion batteries (LIBs) have proven to be …

Three Studies Of Research-Based Pedagogy In Physical Chemistry: Development Of A Zno Thin Film Experiment, Analysis Of Student Discourse By Graph Theory And Cognitive Engagement, Building A Physical Chemistry Faculty Network., Dilhara Liyanage

Theses and Dissertations

Three research projects, each focusing on a different aspect, development of a ZnO thin film experiment, student’s cognitive engagement behavior, and building of a faculty network, are presented in this dissertation.

In the first project, a physical chemistry laboratory experiment was developed to answer the question, “How do electrons move in a solid?”. The experiment structure follows the POGIL-PCL (Process Oriented Guided Inquiry Learning - Physical Chemistry Laboratory) model. Students begin by using the PhET “Quantum Bound States” animation to compare energy levels for single atoms to energy levels of a lattice containing many potential wells, and they incorporate that …

Synthesis Of Supported Metal Nanoparticles On High Surface Area Supports For Application In Energy Conversion And Heterogeneous Catalysis, Nazgol Norouzi

Theses and Dissertations

Precise control of metal nanoparticles’ size, composition, and dispersity over high surface area supports are highly desirable to address current challenges in energy storage and conversion as well as catalytic processes involving precious metals. Therefore, developing viable synthetic routes that enable new catalytic systems derived from inexpensive transition metals or limited use of precious metals is vital for clean energy applications such as fuel cells and rechargeable batteries or affordable drugs in the pharmaceuticals arena. In addition to metal components of heterogeneous catalysts, the catalyst support is an integral part of catalyst design as it can impart both physical stability …

Fabrication And Characterization Of Multicomponent Gradients Containing Weakly Acidic And Basic Functional Groups, Kallol Roy

Theses and Dissertations

Multicomponent synthetic chemical gradients containing amine (NH₂) and carboxylic acid (COOH) groups have been prepared on the silanol (Si-OH) containing a base-layer substrate by the controlled-rate infusion (CRI) method. The spatial variation of weakly acidic COOH and basic NH₂ functional groups on weakly acidic Si-OH surface was created in such a way that the two antagonist groups at high concentrations were in close proximity (aligned gradient) and were separated (opposed gradient). The difference in concentration of different components (acid, base, or silanol) along the length of aligned or opposed resulted in significantly different physicochemical properties …

Structure, Morphology And Composition-Property Elucidation Of Ni–Mo And Ni−Mo−P Nanocrystals For Water Splitting Reactions And Group Iv Alloy And Silicate Nanocrystals For Visible To Near Ir Optoelectronics, Ebtesam Hassan Abuelenein Eladgham

Theses and Dissertations

Abstract

Structure, Morphology and Composition-Property Elucidation of Ni–Mo and Ni−Mo−P Nanocrystals for Water Splitting Reactions and Group IV Alloy and Silicate Nanocrystals for Visible to Near IR Optoelectronics

by

Ebtesam Hassan Abuelenein Eladgham

A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at Virginia Commonwealth University.

Advisor: Indika U Arachchige

Associate Professor, Department of Chemistry

Nanomaterials have gained a great attention because of their unique physical properties with size intermediate between molecular materials and extended solids. They have a large surface to volume ratio and display size tunable physical properties that was not …

Metal-Oxide Nanostructures Fabricated From Reactive Laser Ablation In Liquid, Mallory G. John

Theses and Dissertations

The development of metal-oxide nanostructures is a growing area due to their applications in diverse fields spanning energy conversion and storage, chemical manufacturing, and en- vironmental technology. This interest in catalytically active nanomaterials has prompted the synthesis and investigation of highly functionalized nanoparticles (NPs), including core- shell, silicate-stabilized, and bi- and multi-metallic nanocomposites. While wet-chemical synthesis methods of metal-oxide nanostructures have led to several morphologies, compositions, and shapes, these syntheses often require high temperatures, toxic solvents or reducing agents, and long reaction times.

Laser synthesis and processing of colloids (LSPC) encompasses both ‘top down’ and ‘bottom up’ approaches to synthesize …

Investigation Into The Reaction Profile Of A Bioinspired Nickel Complex, Denver Heitger

Theses and Dissertations

Metal complexes that can activate natural oxidants like H₂O₂ and O₂ have become a key research topic in many labs in hope of mimicking nature, by generating a bioinspired complex that can perform unique chemistry through green processes. To prepare the perfect catalyst, this has lead scientists to explore numerous avenues, including the use of both natural and artificial oxidants, to tease apart the reaction pathway taking place. A ligand system dear to the Lucas Lab (13-DOB) has been metalated with nickel, a cheap and earth abundant transition metal. Our bioinspired metal-(di)oxygen adducts can be formed …

Probing Vibrational Wave Packets In Organophoshorous Molecules Using Femtosecond Time-Resolved Mass Spectrometry (Ftrms), Derrick Ampadu Boateng

Theses and Dissertations

The study of organophosphorus and nitroaromatic compounds is essential due to their suitability as models for understanding the dynamics of radiation induce damage to DNA sugar-phosphate backbone, and the detection of chemical warfare agents as well as nitroaromatic explosives (such as TNT). The ultrafast dynamics of these polyatomic radicals were studied using femtosecond time-resolved mass spectrometry (FTRMS), a versatile method that is capable of monitoring the ultrafast dynamics of rapid dissociation in the gas phase after the removal of an electron. The method uses a technique called pump-probe, which makes use of two time-delayed laser pulses. In this work, the …

Towards A Greener Route To Blockbuster Statin Drugs: Harnessing The Power Of Biocatalysis And Integrating Cross-Coupling Catalysis In The Synthesis Of Rosuvastatin, Chanaka M. Amarasekarage

Theses and Dissertations

As global and political awareness about green and sustainable practices sharpens in the face of dramatic climate change and environmentally detrimental practices, one attractive approach is to harness the catalytic potential of enzymes. Thus influenced, our efforts focused on the development of an innovative chemoenzymatic route to widely prescribed Blockbuster statin drugs, specifically rosuvastatin. In this work, we engineered novel deoxyribose phosphate aldolase (DERA) variants via rationally designed site-directed mutagenesis to accept non-natural, less polar substrate, acrolein, along with acetaldehyde. Several of new mutants displayed elevated tolerance towards aldehydes and showed effective incorporation of acrolein into the unprecedented enzymatically-derived chiral …

Investigations Of Graphene-Supported Single-Atom Catalyst Model Ions In The Gas Phase, Michael Borrome

Theses and Dissertations

Recent developments in heterogeneous catalysis has led to the conception of single-atom catalysts (SACs), a class of catalysts based on isolated metal atoms anchored to a support scaffold. SACs are often much more reactive and can offer better selectivity when compared to nano-scale catalysts. In order to realize the full potential of SACs, a sound understanding of the underlying catalytic mechanisms is required. However, surface analysis tools can become less effective in studying catalytic mechanisms at the atomic scale. Mass spectrometry has proven to be a robust technique for studying organometallic catalytic mechanisms at the single-molecule level. Using mass spectrometry, …

Mechanistic Study Of C-H Activation By Iridium Complexes, Rozalie S G Corea

Theses and Dissertations

C-H activation is considered the “holy grail” of chemistry. Remote, selective C-H activation has many applications such as modifying precursors, adding complexity to molecules, and modifying pre- existing structures in a reduced number of steps. Previous work by Swift and Gronert identified an iridium(III) phenanthroline complex that can activate C-H bonds of cyclohexane. The objective of this dissertation is to study the mechanism and regioselectivity of this complex in common precursors, namely 1-butanol, 1-methoxybutane and butyl acetate.

The studies were carried out in the gas phase on a modified mass spectrometer. Selectively deuterated alcohol, ether and ester were used to …

Photocatalytic Degradation Of Simazine Under Visible Light Using Zinc Oxide/Molybdenum Disulfide Heterostructures, Alexandria Castillo

Theses and Dissertations

The photocatalytic degradation of simazine under visible light by using ZnO/MoS2 heterostructures was investigated. Reaction parameters studied to optimize simazine degradation included pH, loading mass of the photocatalyst, and percentage of MoS2 in the heterostructure. pH 2 was the optimal environment for the degradation reaction of all catalysts. A loading mass of 20 mg for each of the ZnO/MoS2 photocatalysts was determined to be the most effective for in the degradation process. The degradation reactions were observed to follow 2nd order kinetics for all photocatalysts at all temperatures. Band gap studies confirmed a lower energy than that of pure ZnO …

Stacked Core-Shell & Self-Supported Nanorod Array Electrocatalysts For Pem Fuel Cells, Fatma Merve Yurtsever

Theses and Dissertations

Polymer electrolyte membrane fuel cell (PEMFC) is one of the most attractive technologies for clean, renewable energy in the twenty-first century. It has many advantages in terms of zero carbon emission, quiet operation mode, high power density, higher efficiency than Carnot engines, and it requires less warm-up & fast start-up time. However, oxygen reduction reaction (ORR) activity and stability are still significant issues for the next generation PEMFCs to increase its usage. In this study, we developed a new design of stacked core-shell nanorod array and self-supported composition graded Pt:Ni nanorod array electrocatalyst to improve ORR kinetics and catalyst stability. …

Syntheses, Characterization, And Preliminary Evaluation Of Potential Ruthenium Anticancer Complexes Containing Schiff Base Ligands, Stephen Mensah

Theses and Dissertations

Platinum-based drugs have over the years been administered in the treatment of tumours.

Unfortunately, platinum resistance and the severe side effects associated with the treatments has necessitated the research for new anti-cancer drugs. Ruthenium(II) and Ruthenium(III) complexes have shown promise as useful alternative anticancer agents. The lead candidates include the Ru(II) complex RAPTA-C, a ruthenium(II)-arene complex [Ru(η6-p-cymene)Cl2(1,3,5-triaza-7-phosphaadamantane)] and the Ru(III) complex NAMI-A [imidazoleH][trans-Ru(imidazole) (dimethyl sulfoxide)Cl4]. Both compounds have shown potent cytotoxic activity in several primary human tumor models. Unfortunately, NAMI-A could not advance in clinical evaluations due to limited efficacy in vivo, while the clinical evaluation of RAPTA-C is unknown. …

Macromolecular Engineering Of Biomass Polymers And Stimuli-Responsive Materials Towards Enhanced Thermomechanical Properties, Meghan E. Lamm

Theses and Dissertations

Commodity polymers are used in every aspect of daily life, and most of these polymeric materials are synthesized using petroleum-derived sources. There are direct environmental consequences to this petroleum dependence including greenhouse gas emissions and climate change. Biomass-based polymers show promise for the mitigation on negative environmental impact, in comparison with petroleum-derived counterparts. However, some biopolymers suffer from low chain entanglement due to bulky or long side chain structures, resulting in poor mechanical properties. In this dissertation work, macromolecular engineering is used to design biomass-derived polymers featuring a variety of structures and functionalities. Additionally, biopolymer properties (including thermomechanical enhancement) and …

Cdse Quantum Dot Surface Chemistry Thermodynamics Via Isothermal Titration Calorimetry: An Emphasis On The Fundamentals, Megan Y. Gee

Theses and Dissertations

For several decades, the study and development of colloidal semiconductor nanocrystals, or quantum dots (QD), has become a rich field heralding improved integration into applications ranging from photovoltaics and photocatalysis to biomedical imaging and drug delivery. CdxSey is the most extensively studied QD system, however numerous compositional details still confound the nanocrystal field. Although CdSe QDs with native ligand coatings can show high fluorescence quantum yield and may be suitable for some applications, often times these original ligand layers are comprised of long aliphatic chains that preclude incorporation into biological matrices or severely impede charge transfer – depending on the …

Ultra-Fast Sensors To Study The Fundamental Neurochemistry Underlying Disease, Alyssa West

Theses and Dissertations

Serotonin is a vital neurotransmitter whose exact roles are ill-defined. Dysfunctions in serotonin signaling are thought to underlie a myriad of neurological problems including depression and autism spectrum disorder (ASD). Prior to investigating serotonin’s role in disease states, one must understand more about the functionality of serotonin in healthy in vivo models. To study serotonin in vivo, fast-scan cyclic voltammetry (FSCV) and fast- scan controlled adsorption voltammetry (FSCAV) are employed to measure evoked and basal serotonin concentration, respectively. These methods, combined with mathematical modeling, provide information regarding regulatory mechanisms of serotonin neurotransmission. FSCV and FSCAV are first applied to …

Preparation And Detailed X-Ray Photoelectron Spectroscopy And Spectroscopic Ellipsometryanalysis Of Ultrathin Protective Coatings, Brian Ivins Johnson

Theses and Dissertations

Ultra-thin films (UTFs) are important in many applications, seen in the semiconductor industry, in chromatography, in sensing, in microfluidics, in aerospace, and in robotics. They also protect materials from corrosion, change surface energies, limit water intrusion into materials, allow material self-cleaning and self-healing, provide scratch resistance, and impart other specific chemical properties. In many cases, UTFs drastically alter surface properties and therefore their applications. It is imperative that proper and consistent characterization be performed on coatings to confirm and understand their desired properties. In Chapter two, Al oxidation under MgF2 protective layers is studied using real time X-ray photoelectron spectroscopy …

Self-Assembly And Emergent Properties Of Urea Tethered Triphenylamines For The Formation Of Regenerable Radicals, Ammon J. Sindt

Theses and Dissertations

Self-assembly of photoactive compounds in the solid-state can give rise to new photophysical properties. Key to these properties, is how these compounds can be organized in a uniform way. For this, hydrogen bonding building blocks can be used to guide the assembly of these compounds into organized structures. For instance, ureas, thioureas, and squaramides which contain both hydrogen bond donors and acceptors can guide the assembly of small m-xylene macrocycles in three distinct manners: 1-D columns, edge-to-face Herringbone patterns, and interdigitated networks. The former of these is commonly employed in our group to make either linear or macrocyclic dimers …

Heterogeneous Ozonation Of Model Drinking Water Contaminants Using Cbv-720 Zeolite, Benson Maxwell Solomon

Theses and Dissertations

Advanced Oxidation Processes (AOPs) are designed to remove aqueous organic contaminants through their reaction with hydroxyl radicals (HO∙). Ozone is classified as an AOP due to its ability to produce hydroxyl radicals, as well as its ability to oxidize a wide range of organic contaminants. Due to the unselective nature of hydroxyl radicals, many organic and inorganic co-solutes can act as scavengers, reducing the efficiency of an AOP. Here we show a probe system for testing the hypothesis that adsorptive ozonation of contaminants may yield a more selective environment that favors neutral contaminant oxidation over oxidation of co-solutes.

Initial experiments …

Synthesis And Characterization Of Hyaluronic Acid Based Biomaterials For Drug Delivery And Virus Modification, Amanda Wagner

Theses and Dissertations

In this thesis, hyaluronic acid based biomaterials are studied. The properties and potential applications of these polymers are characterized and discussed.

In Chapter 1, biomaterials are introduced as well as hydrogels and nanogels. Hyaluronic acid is highlighted as a remarkable bio-polymer. The overall objectives of my research are also discussed.

Chapter 2 is focused around trials for utilizing graphene oxide as a nanomaterial for controlling the drug release of an aromatic compound. Hyaluronic acid based hydrogels were synthesized as a delivery vessel. The results of the drug release profiles are examined and discussed.

A different direction is taken in Chapter …

Studies Of Ch Activation In Unsaturated Amides And Esters By Trinuclear Metal Carbonyl Clusters Of Osmium, Morteza Maleki

Theses and Dissertations

The chemistry of the reaction of Os3(CO)10(NCCH3)2 with representatives of unsaturated amides and esters, RCOCHCH2 (R=(CH3)2N, CH3O) has been investigated. In these reactions, it has been observed that a CH bond on the β-carbon atom is readily activated by triosmium carbonyl clusters. The activation of β-carbon C-H bond in unsaturated amides and esters provides a robust platform for studying multicenter C-H bond transformations and for C-C bond formation via hydrogen shift and CO insertion processes. In this work, proposed mechanistic approaches have been taken in order to better understand and study the relationship between the characterized species. In addition, a …

Frontiers In Fast Voltammetry: Novel Analytes And Applications, Jordan Holmes

Theses and Dissertations

Electrochemical sensors are beneficial towards the development and advancement of monitoring devices. As this type of technology progresses, so does our ability to create state-of-the-art sensing strategies to probe environmental and biological systems at the source. In the environment, it is essential to monitor particularly harmful contaminants like trace metals in order to better mitigate risk. Additionally, biological molecules are often times challenging to measure because matrices are complex and difficult to probe; Recent advancements in chemical ex vivo and in vivo sensing platforms have offered insight into physiological processes. The brain in particular requires a sophisticated, implantable sensor as …

Designing, Constructing, And Employing Two-Dimensional Ultrafast Spectroscopy To Resolve Complex Kinetics, Jason R. Darvin

Theses and Dissertations

Multiple population-period transient spectroscopy (MUPPETS) is a two dimensional ultrafast time resolved spectroscopy technique. MUPPETS uses three pairs of optical pulses over two time periods to separate homogeneous and heterogeneous causes of rate dispersion. This dissertation details improvements to the MUPPETS optical assembly enabling measurements on systems that previously fell outside of the MUPPETS 2-ns time window. In addition, the theoretical groundwork is laid to unveil the hidden coordinate controlling rate exchange using 2D and 3D correlation functions.

The first project details improvements made to the MUPPETS assembly. A detailed method was developed to eliminate astigmatism, coma, and spherical aberration …

Study Of Transition State Stabilization Using Molecular Rotors, Erik Carl Vik

Theses and Dissertations

Molecular devices that function as rotors and measurement devices are the main topic of this dissertation. Each study contains a device based on an N-phenylimide framework, which has restricted rotation about the N-C (imide-phenyl) single bond due to a steric clash from the imide carbonyl and the phenyl rings ortho substituent. In general, two ground states are observed by 1H NMR, which are separated by a single transition state (TS). Incorporation of non-covalent interactions into the TS led to measurable changes in the rate for rotation. While the molecules in this dissertation revealed details that could not have been predicted, …

Studies On The Mechanism And Application Of Steam Thermography, Raymond Gerard Belliveau Iii

Theses and Dissertations

The detection of blood on fabrics for forensic purposes is a widely studied topic in forensic science, and to that end, effort in this laboratory has been devoted to developing a thermal imaging method called steam thermography. Steam thermography is a method used to enhance chemical contrast in thermographic images by exposing a surface to water vapor during imaging. The exposure of water vapor to the surface generates heat, and can differentially increase the thermographically measured apparent temperature of imaged surfaces. This can result in thermographic contrast between surfaces with different chemical properties. Previously reported proposed mechanisms to describe the …