Chemistry Commons^™

An Effective Microwave-Induced Iodine-Catalyzed Method For The Synthesis Of Quinoxalines Via Condensation Of 12-Diamines With 12-Dicarbonyl Compounds, Debasish Bandyopadhyay, Sanghamitra Mukherjee, Robert R. Rodriguez, Bimal K. Banik

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

A microwave-induced iodine-catalyzed simple, rapid and convenient synthesis of different types of quinoxalines via condensation of 1,2-diamines with 1,2-dicarbonyl compounds has been accomplished with an excellent yield.

A Synthetic Approach Toward Novel Β-Lactams, Mohamed Hashim

Theses and Dissertations - UTB/UTPA

β-lactam antibiotics which is a class by itself, covers a wide range of antibiotics that includes penicillin, penicillin derivatives, cephalosporins, carbapenems, and any antibiotic agent that contains a 2-azetidinone ring.[2] In recent past research it has been established that β-lactams show therapeutic and anticancer activity with low toxicity. [2] It has also been reported by our lab that N-chrysenyl and N-phenanthrenyl 3-acetoxy-4-aryl-2- azetidinone can exhibit potent selective anticancer activity towards prostate, colon, pancreatic cancer and leukemia at low concentrations, all of this was revealed by means of a structure activity study. [2] The goal of our research is the synthesis …

Trace Analysis Of Volatile Organic Compounds In The Water Of The Arroyo Colorado And The Lower Laguna Madre Utilizing E.P.A.Sw846 Method 8260, Humberto Valdez

Theses and Dissertations - UTB/UTPA

Volatile organic compounds (VOC) can cause a major environmental concern since they create a hazard to public health and the environment. This study focused on determining concentration of VOCs in Arroyo Colorado waters and the Lower Laguna Madre (LLM) utilizing GC/MS. Little is known on the concentration and composition of VOCs. Toluene was the most common VOC. Concentrations ranged from 0.0010 mg/L to 0.0039 mg/L. Analysis of a sediment pore water sample collected near the mouth of the Arroyo Colorado also detected toluene (0.0023 mg/L). This study showed that VOCs were concentrated near the county boat launch and somewhat downstream. …

A Proposal For The Mechanism Of The Iron-Ascorbate, Fenton, And Hydroxyl Radical-Quenching Series, Jonathan Velasco

Theses and Dissertations - UTB/UTPA

The Fenton reaction between [Fe(II)] and [HOOH] is observed in the presence of ascorbic acid, [AscH-], during [Fe(III)] and HO• reduction; this is done as part of consecutive redox reactions between [Fe(III)] and [Fe(II)]. As a result, the rate orders with respect to [Fe(III)], ascorbic acid, and [HOOH] are of (approximately) 2nd, 1st, and 4 th order, respectively. However, the rate constants for each reaction in this study show patterns when measured against solution pH; empirically, reactions proceed faster at smaller pH and vice versa.

Identification Of Phosphatases Involved In E2f-Associated Apoptosis, Liza D. Morales Smith

Theses and Dissertations - UTB/UTPA

Retinoblastoma (Rb) is a tumor suppressor protein that controls a critical checkpoint between the G1 phase and the S phase of the cell cycle. Rb is able to suppress cell proliferation by binding to the E2F family of transcription factors, inhibiting its ability to activate transcription of genes necessary for cell cycle progression. Mutations in proteins involved with the Rb/E2F pathway can result in hyper-proliferative cells that overtime can acquire and accumulate additional mutations, which could lead to tumorigenesis. To prevent hyper-proliferation, aberrant cells can be eliminated through apoptosis. E2F can induce apoptosis through two pathways: through transactivation of the …

Genotyping Of Tgif Polymorphisms Associated With Schizophrenia And Psychosis, George Vera Jr.

Theses and Dissertations - UTB/UTPA

Polymorphisms in Transforming Growth β-Induced Factor (TGIF) have been found to contribute to the risk of development of psychosis and related disorders. Identifying the genes responsible for causing schizophrenia and psychosis will allow for treatment at an earlier stage of development, saving the patient problems, time, and money. The purpose of this experiment is to determine the haplotype of DNA samples obtained from earlier experiments. The DNA samples were collected from people with schizophrenia in Costa Rica, Southern Texas, and Northern Mexico. The samples were tested using 5 single nucleotide polymorphisms (SNPs) and amplified using polymerase chain reaction (PCR). Haplotypes …

An Exploratory Study Of Methicillin-Resistant Staphylococcus Aureus And Sccmec Elements Obtained From A Community Setting Along The Texas Border With Mexico, David R. Ammons, Raghuveer Puttagunta, Jose C. Granados, Georgina De La Garza, George Eyambe, Joanne Rampersad-Ammons

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

An exploratory study of methicillin-resistant Staphylococcus aureus (MRSA) and SCCmec elements in bacteria along the Mexican border of south Texas was performed. Between September and December of 2008, 375 swabs of anterior nares were self-collected by students attending the University of Texas-Pan American (UTPA) and cultured for MRSA. Fifty seven bacterial isolates were kept for further analysis that included suspected MRSA and other SCCmec-containing bacteria. Isolates were examined for the presence of nuc, mecA, lukS-PV, and spa genes using PCR. SCCmec and spa typing were also performed. Seven S. aureus isolates were found …

An Expeditious Synthesis Of N-Substituted Pyrroles Via Microwave-Induced Iodine-Catalyzed Reactions Under Solventless Conditions, Debasish Bandyopadhyay, Sanghamitra Mukherjee, Bimal K. Banik

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

An expeditious synthesis of N-substituted pyrroles has been developed by reacting 2,5-dimethoxy tetrahydrofuran and several amines using a microwave-induced molecular iodine-catalyzed reaction under solventless conditions.

Nuclear Quantum Effects In The Structure And Lineshapes Of The N2 Near-Edge X-Ray Absorption Fine Structure Spectrum, Shervin Fatehi, Craig P. Schwartz, Richard J. Saykally, David Prendergast

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

We study the relative ability of several models of x-ray absorption spectra to capture the Franck–Condon structure apparent from an experiment on gaseous nitrogen. In doing so, we adopt the Born–Oppenheimer approximation and a constrained density functional theory method for computing the energies of the x-ray-excited molecule. Starting from an otherwise classical model for the spectrum, we systematically introduce more realistic physics, first by substituting the quantum mechanical nuclear radial density in the bond separation R for the classical radial density, then by adding the effect of zero-point energy and other level shifts, and finally by including explicit rovibrational quantization …

Microscopic And Spectroscopic Studies Of Thermally Enhanced Electrospun Pmma Micro- And Nanofibers, Sean Pelfrey, Travis Cantu, Michael R. Papantonakis, Duane L. Simonson, R. Andrew Mcgill, Javier Macossay-Torres

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

Carbon nanofibers (CNFs) have been incorporated into poly(methyl methacrylate) (PMMA) through electrospinning. The resulting micro- and nanofibers have been characterized by Scanning Electron Microscopy (SEM), which confirmed fiber formation and demonstrated a core-sheath structure of the PMMA fibers. Thermogravimetric Analysis (TGA) was used to obtain the thermal properties of the materials, indicating an enhancement in the thermal properties of the composite fibers. In addition, Fourier Transform Infrared Spectroscopy (FTIR) was utilized to investigate the interactions of PMMA micro- and nanofibers with CNFs, demonstrating the preferred sites of intermolecular interactions between the polymer matrix and the filler.

Remarkable Iodine-Catalyzed Synthesis Of Novel Pyrrole- Bearing N-Polyaromatic B-Lactams, Debasish Bandyopadhyay, Gildardo Rivera, Isabel Salinas, Hector Aguilar, Bimal K. Banik

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

Because of their interesting biological properties various methods for the synthesis of substituted pyrroles are described in the literature. However, synthesis of pyrroles fused with a β-lactam ring has not been reported. Our group has demonstrated synthesis and biological evaluation of various β-lactams as anticancer agents. The anticancer activities of these compounds have prompted us to study the synthesis of pyrroles bound to the β-lactams. We have identified an expeditious synthetic method for the preparation of pyrroles fused with β-lactams by reacting 3-amino β-lactams with acetonylacetone in the presence of catalytic amounts (5 mol%) of molecular iodine at room temperature. …

Utilizing Concept Mapping As A Teaching And Learning Tool To Prepare For The Science Taks Test, Rosa Linda Zuniga

Theses and Dissertations - UTB/UTPA

Concept mapping was used with Donna High School students to determine its effect on the Texas Assessment of Knowledge and Skills (TAKS) test. Concept mapping was used with models such as the Sheltered Instruction Observation Protocol model (SIOP), the 5- E model, and the Learning Groups model. This measure was taken because the models used have not helped students improve their TAKS scores significantly. The findings of this research reveals that using the process of concept mapping together with the SIOP model helps students clearly see related concepts and motivates them to think more deeply. Students quickly realize what concepts …

An Expeditious Synthesis Of 3-Amino B-Lactams Derived From Polyaromatic Compounds, Gildardo Rivera, Debasish Bandyopadhyay, Sonam Jaggi, R. Christopher Gonzales, Bimal K. Banik

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

A simple an effective method for the synthesis of a few trans 3-amino B-lactams derived from polyaromatic compounds has been accomplished via the deprotection of phthalimido groups with ethylene diamine.

Effects Of Adding An Enhanced Material Instructional Model To A Collaborative Grouping Instructional Strategy In A College Preparatory Chemistry Course, Chinyere Fidelia Shaw-Nnajiofor

Theses and Dissertations - UTB/UTPA

This research study investigated comparable academic achievement outcomes between an experimental group (EG) and a control group (CG) in a college preparatory chemistry course using a mixture of instructional pedagogies. The subjects comprised native and non-native English speakers, often identified as Limited English Proficiency (LEP) students. The study found no statistically significant difference between the pre-test scores of EG and CG students and a significant difference between the post-test scores of students in the experimental group compared to those of the control group. No significant difference was observed when comparing the test scores of the post-tests of the LEP-EG students …

Excess Of Glucocorticoid Induces Cardiac Dysfunction Via Activating Angiotensin Ii Pathway, Sreerupa Ghose Roy, Priyanka De, Debasri Mukherjee, Vivek Chander, Aditya Konar, Debasish Bandyopadhyay, Arun Bandyopadhyay

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

Background: Glucocorticoid is widely used as an anti-inflammatory drug in various diseases however excess of it often causes cardiovascular complications. The present study was undertaken to understand the molecular mechanism of glucocorticoid-induced cardiac dysfunction.

Methods: Rats were treated daily with synthetic glucocorticoid, dexamethasone with or without mifepristone or losartan up to 15 days. Hemodynamic parameters were measured by PV-loop method using Millar's instrument. Cardiac remodelling, fibrosis and oxidative stress were monitored after 15 days.

Results: The systolic blood pressure was increased whereas the heart beat and cardiac output (n=6) were decreased by dexamethasone. Dexamethasone caused increase in the heart …

Luminescent Properties Of Ensemble And Individual Erbium-Doped Yttrium Oxide Nanotubes, Yuanbing Mao, Xia Guo, Thai Tran, Kang L. Wang, C. Ken Shih, Jane P. Chang

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

The luminescent properties, including cathodoluminescence and photoluminescence, of the erbium-doped yttrium oxide (Er3+: Y2 O3) nanotubes (NTs) have been systematically studied. These NTs were synthesized by a hydrothermal treatment followed by a dehydration process. Cathodoluminescent measurements show that every Er3+: Y2 O3 NT is luminescent under electron excitation. In the near-infrared region, sharp, well-resolved, pump-power-dependent, and thermally stable photoluminescence was observed from ensemble NTs. Individual NTs also present characteristic luminescent emissions in the same spectral region. These properties make these NTs promising for applications in display, bioanalysis, and telecommunication.

Impact Of Flash Animation In Learning Concepts Of Matter Among Elementary Students, Rhodora S. Santos

Theses and Dissertations - UTB/UTPA

This study examines the instructional effect of flash animation on students' achievement in learning specific concepts of matter. The subjects used in this study were 5th-grade students of the researcher from Dan Ramirez Elementary. Each class or section of these students was randomly assigned as the control group (n = 20) and the experimental group (n =20). The subjects in the control group were exposed to traditional textbook reading while the subjects in the experimental group were exposed to flash animation. To measure the students' achievement from the concepts learned, a pre-test and a post test were both administered to …

Synthesis And Characterization Of Two Metal-Organic Frameworks, Roxanna Schaffino Moore

Theses and Dissertations - UTB/UTPA

Herein, the design and synthesis of two metal-organic frameworks, Zn 4O(FMA)3 (FMA = fumaric acid) and Zn2(CNC) 2(DPT) (CNC = 4-carboxycinnamic acid; DPT = 3,6-Di-4-pyridy1-1,2,4,5-tetrazine) via solvothermal methods are reported. Zn4O(FMA)3 was isolated as light yellow cubic crystals and Zn2(CNC)2(DPT) as light pink-block shaped crystals. The structures of both MOFs were characterized by single X-ray diffraction. Integrity of both MOFs were determined via powder X-ray diffraction and thermal gravimetric analysis. Zn4O(FMA) 3 is an isoreticular MOF exhibiting 6.8 Å pores taking up 5.2 wt % of hydrogen gas at 40 bar and 77K. Zn2(CNC)2(DPT) is a 3D primative cubic net …

Completing Chemistry Taks Objective 4(9d): The Effect Of Flash Animation, Judith B. Dano

Theses and Dissertations - UTB/UTPA

This study examines the effect of flash animation on learning effectiveness. The main goal of the study was to verify if using flash animation on learning chemistry concepts particularly Chemistry TAKS Objective 4 (9D) will have an impact on students learning achievement. The subjects in this study were 10th grade students from PSJA Memorial High School. Two class sections were randomly assigned as the treatment group each with 20 subjects (n=40) and another two class sections were assigned as the control group (n=40). The treatment group was exposed to flash animation while the control group had the traditional lecture type …

Electrospinning Polystyrene Reinforced With Multi-Walled Carbon Nanotubes: Parameters For Obtaining Nanofibers With Enhanced Thermal Properties, Ana Veronica Rodriguez Ybarra

Theses and Dissertations - UTB/UTPA

Various concentrations of multi-walled carbon nanotubes (MWCNTs) were dispersed in a polystyrene matrix in order to determine the optimal MWCNT concentration that would enhance the thermal properties of the composite. The MWCNTs were dispersed in the polystyrene matrix by high energy sonication and then electrospun. The microstructural characterization such as fiber diameter, fiber orientation, fiber morphology, porosity, cross-section shape, and surface roughness of the nanofibers electrospun from these composites were made by scanning electron microscopy and transmission electron microscopy. Spectroscopic characterization for these nanofibers was conducted using Fourier Transform infrared spectroscopy and Raman spectroscopy was utilized to establish a nanotube/matrix …

Microwave-Assisted Ruthenium Trichloride-Catalyzed Synthesis Of Pyrrole Fused With Indole System In Water, Debasish Bandyopadhyay, Antara Banik, Sahil Bhatta, Bimal K. Banik

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

A simple and efficient microwave-induced ruthenium trichloride-catalyzed synthesis of pyrrole fused with indole system in water is developed by reacting commercially available isatin and 4-hydroxyproline.

Gec1-Kappa Opioid Receptor Binding Involves Hydrophobic Interactions Gec1 Has Chaperone-Like Effect, Yong Chen, Chongguang Chen, Evangelia Kotsikorou, Diane L. Lynch, Patricia H. Reggio, Lee Yuan Liu-Chen

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

We demonstrated previously that the protein GEC1 (glandular epithelial cell 1) bound to the human κ opioid receptor (hKOPR) and promoted cell surface expression of the receptor by facilitating its trafficking along the secretory pathway. Here we showed that three hKOPR residues (Phe³⁴⁵, Pro³⁴⁶, and Met³⁵⁰) and seven GEC1 residues (Tyr⁴⁹, Val⁵¹, Leu⁵⁵, Thr⁵⁶, Val⁵⁷, Phe⁶⁰, and Ile⁶⁴) are indispensable for the interaction. Modeling studies revealed that the interaction was mediated via direct contacts between the kinked hydrophobic fragment in …

Highly Stereoselective B-Lactam Synthesis Via The Staudinger Reaction Using Poly Aromatic Imines, Debasish Bandyopadhyay, Monica Xavier, Bimal K. Banik

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

Highly stereoselective synthesis of a few trans 3-phthalimido substituted B-lactams has been achieved following Staudinger reaction.

Structure Of Polc Reveals Unique Dna Binding And Fidelity Determinants, Ronald J. Evans, Douglas R. Davies, James M. Bullard, Jeffrey Christensen, Louis S. Green, Joseph W. Guiles, Janice D. Pata, Wendy K. Ribble, Nebojsa Janjic, Thale C. Jarvis

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

PolC is the polymerase responsible for genome duplication in many Gram-positive bacteria and represents an attractive target for antibacterial development. We have determined the 2.4-Å resolution crystal structure of Geobacillus kaustophilus PolC in a ternary complex with DNA and dGTP. The structure reveals nascent base pair interactions that lead to highly accurate nucleotide incorporation. A unique β-strand motif in the PolC thumb domain contacts the minor groove, allowing replication errors to be sensed up to 8 nt upstream of the active site. PolC exhibits the potential for large-scale conformational flexibility, which could encompass the catalytic residues. The structure suggests a …

Correlation Between Luminescent Properties And Local Coordination Environment For Erbium Dopant In Yttrium Oxide Nanotubes, Yuanbing Mao, John Bargar, Michael Toney, Jane P. Chang

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

The local dopant coordination environment and its effect on the photoluminescent (PL) spectral features of erbium-doped yttrium oxide nanotubes (NTs) were probed by synchrotron-based x-ray diffraction (XRD), x-ray absorption near-edge spectroscopy (XANES), and extended x-ray absorption fine structure (EXAFS). XRD, XANES, and EXAFS data demonstrate that single phase solid solutions of Y (2-x) Erx O3 were formed at 0≤x

Comparison Of Polymerase Chain Reaction And Bacterial Culture For Salmonella Detection In The Muscovy Duck In Trinidad And Tobago, Joanne Rampersad-Ammons, Jenelle Johnson, Gabriel Brown, Michael S. Samlal, David R. Ammons

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

Objectives: The purpose of this study was to investigate the presence and serovar identity of Salmonella, at the national level, in farmed Muscovy ducks (Cairina moschata) in Trinidad and Tobago, and to compare the relative benefits of bacterial culture to those of polymerase chain reaction (PCR) for use in the routine detection and surveillance of Salmonella in these ducks.

Methods: From March-September 2003, 110 fecal samples were collected from 82 farms across the islands of Trinidad and Tobago. Salmonella was isolated from fresh and frozen samples and the serotype of each was determined through bacterial culture. An in-house, nested PCR …

Microwave Spectra And Ab Initio Studies Of Ar-Propane And Ne-Propane Complexes: Structure And Dynamics, Karen I. Peterson, David Pullman, Wei Lin, Andrea J. Minei, Stewart E. Novick

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

Microwave spectra in the 7-26 MHz region have been measured for the van der Waals complexes, Ar-C H3 C H2 C H3, Ar- C13 H3 C H2 C H3, Ne20 -C H3 C H2 C H3, and Ne22 -C H3 C H2 C H3. Both a - and c -type transitions are observed for the Ar-propane complex. The c -type transitions are much stronger indicating that the small dipole moment of the propane (0.0848 D) is aligned perpendicular to the van der Waals bond axis. While the 42 transition lines observed for the primary argon complex are well fitted to …

An Overview Of The Genus Nardostachys, Asima Chatterjee, Utpal Dutta, Debasish Bandyopadhyay, Anupam Nayak, Bidyut Basak, Avijit Banerji, Julie Banerji

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

Nardostachys jatamansi, a medicinally important herb of Nepalese origin, has been used for centuries in the Ayurvedic and Unani systems of medicine. In combination with Marsilea minuta it is being used as an antistress and anticonvulsant drug and also finds use in the treatment of epilepsy. Recently, it has been reported that N. jatamansi, which plays an important role in protecting from cerebral ischemia and liver damage, is also used for the treatment of osteoporosis and hypercalcemia. The other member of the genus Nardostachys, N. chinensis, possesses antifungal and antimalarial properties. It is also used in the treatment of skin …

In-House Polymerase Chain Reaction For Affordable And Sustainable Chlamydia Trachomatis Detection In Trinidad And Tobago, Joanne Rampersad, Xiaohui Wang, Helen Gayadeen, Samuel Ramsewak, David Ammons

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

Objectives: To provide a preliminary assessment of in-house polymerase chain reaction (PCR) as an alternative to the more costly commercial test for detection of asymptomatic infection by Chlamydia trachomatis and to provide much needed demographic data on infection indicators within the Trinidad and Tobago public health care system.

Methods: An inexpensive in-house nested-PCR with an Internal Amplification Control was used to detect C. trachomatis and Neisseria gonorrhoeae in urine samples collected from 273 apparently healthy, pregnant women from March-September 2004 in Trinidad, West Indies. Demographic information on participants was collected and subjected to statistical analyses.

Results: C. trachomatis was detected …

N-(4-Methylphenyl) Benzenepropanamide - The First Isolated Amide From The Genus Paederia, Debasish Bandyopadhyay, Anupam Nayak, Bidyut Basak, Avijit Banerji, Julie Banerji, Asima Chatterjee, Thierry Prang, Alain Neuman

School of Integrative Biological & Chemical Sciences (Formerly Dept. of Chemistry)

Investigation of the stem of Paederia foetida (Rubiaceae) resulted in the isolation and characterization of N-(4-methylphenyl)-benzopropanamide, which was hitherto unknown as a natural product This is the first report of an amide for the genus Paederia.