Non-linear Dynamics Commons^™

Information Theory Analysis Of Water Vapor Stable Isotopes From The Sail Campaign, Matthew John Rybecky

Earth and Planetary Sciences ETDs

Understanding the processes that control water vapor isotopic composition in mountain environ- ments is essential for interpreting isotope records and predicting water resource responses to cli- mate change. This thesis applies information theory to continuous, high-resolution water vapor stable isotope measurements from the Surface Atmosphere Integrated Field Laboratory (SAIL) campaign in the East River watershed of Colorado’s Upper Gunnison Basin, spanning the winter- to-spring transition of 2022–2023. The analysis employs Shannon entropy, mutual information, transfer entropy, and joint transfer en- tropy (JTE) to quantify how environmental variables, including surface meteorology, radiation, tur- bulent fluxes, and ERA5 reanalysis products, transfer information …

Adaptive Intervention Strategies In Co-Evolving Multiplex Networks: A Reinforcement Learning Approach To Real-Time Misinformation Containment, Anjali Ashokrao Bhadre Dr., Harshvardhan Prabhakar Ghongade Dr.

Northeast Journal of Complex Systems (NEJCS)

The growing transmission of misinformation via social media creates serious challenges to public health, democracy and social cohesion. To date, methods used to contain misinformation rely upon static representations of networks and set rules for interventions. In contrast, this study presents the first Multiplex Adaptive Reinforcement Intervention Network (MARIN), a framework for real-time adaptive intervention in the context of dynamic misinformation transmission using co-evolving multiplex networks and deep reinforcement learning. Unlike past studies that have assumed static network structures, MARIN has the ability to allow for dynamic changes in network topology as a result of both misinformation transmission and intervention …

A Professional Development Course On Data-Driven Dynamical Systems At A Primarily Undergraduate Institution: Part A - Scientific Content, Alessandro M. Selvitella, Jeffrey R. Anderson

CODEE Journal

In the age of data-driven decision making, ordinary differential equations (ODEs) remain a powerful and interpretable framework for modeling dynamic processes, especially when integrated with modern tools from statistical learning and data-driven dynamical systems. Yet, general undergraduate and graduate curricula do not typically address key opportunities in data-driven dynamical systems.

This first paper in a series focuses on the mathematical and methodological core of a professional development course first developed in the academic year 2025-2026 at a Primarily Undergraduate Institution, Purdue University Fort Wayne. The curriculum developed in this course emphasized how regression, regularization, and sparse identification can be used …

Distributed Self-Control Of Dynamical Networks By Adaptive Link Weight Adjustments, Hiroki Sayama

Northeast Journal of Complex Systems (NEJCS)

Conventional control theory considers controlling the behavior of a dynamical system toward a desired state by injecting externally designed inputs into the system. Meanwhile, most complex systems exhibit self-organization through local information exchanges among individual dynamical components that are embedded within a complex network of interactions. The self-organizing dynamics of those systems are realized in a highly distributed manner using locally available information only, and therefore, their behaviors have not been discussed much from a control theoretic viewpoint. Meanwhile, adaptive networks, i.e., dynamical networks whose states and topologies coevolve at similar time scales, can offer a promising theoretical framework in …

Phenological Overlap In Obligate Plant-Pollinator Mutualism, Austin J. Carlson

2026 Spring Honors Capstones Projects

Plant-pollinator mutualisms require temporal overlap between flowering and pollinator activity, so climate-driven timing shifts can weaken the interaction and, in severe cases, destabilize the system. This work investigates how reduced overlap affects persistence in an obligate plant-pollinator pair using a coupled differential equation model in which a phenological overlap factor scales the saturating mutualistic benefit. Simplification with a constant overlap enables closed-form equilibrium and stability analysis, revealing that below a critical overlap threshold, coexistence is no longer maintained. Rescaling reduces the parameter space from ten quantities to seven dimensionless groups, and sensitivity analysis identifies the degree of species dependence and …

Safe Control Design For Quadruped Locomotion In Unstructured Environments Using Linear Transfer Operators, Sriram Sundar Krishnamoorthy Shankara Narayanan

All Dissertations

Deploying quadruped robots in unstructured, obstacle-rich environments requires control and planning methods that remain safe and reliable despite complex terrain geometry, limited sensing, and inevitable modeling errors. This thesis develops operator-theoretic tools for safe control design of robotic systems using linear transfer operators, with a focus on quadruped locomotion in unstructured environments. The central goal is to develop a unified operator-theoretic framework for safe control design based on the Perron–Frobenius (P–F) and Koopman operators. In particular, the thesis leverages \emph{density functions} to develop safe navigation frameworks in the dual space of densities. In the operator-theoretic perspective, the P–F operator governs …

The Digital Neuron: Neural Cellular Automata For Neural–Symbolic Translation, Nicole Assenza

SMU Data Science Review

A neural cellular automata (NCA) architecture, referred to as Pluto’s NCA, was developed to characterize bilateral communication and semantic reciprocity between symbolic representations and a spatially distributed update field. The architecture employs an encoder–automata–decoder pipeline that maps symbolic inputs into a multichannel state field and reconstructs them through agreement-driven attractor convergence within a stable semantic attractor landscape. System behavior was evaluated under controlled perturbations, including rhythmic desynchronization, graded ablations, correlated and independent noise, and percolation-based structural degradation. Quantities such as Agreement(t), internal coherence Aᵢ(t), the recovery time constant τ, and the critical percolation threshold pc were measured to assess stability, …

A Stability Analysis Of The Phase-Lock Equations, Brian M. Sunguza

UNF Graduate Theses and Dissertations

Ginzburg and Landau have provided a set of equations that relate superconductivity to magnetic fields. Through a transformation process, Zhan has derived what are now called the phase-lock equations. A stability analysis of the spatially-independent phase-lock equations is the purpose of this presentation. This simplification is significant since it allowed for the analytical determination of equilibria, their stability, and the influence of a periodic forcing function. Through the use of an original code, numerical simulations are shown to corroborate the analytical results described above.

This analysis includes novel Lyapunov functions that allowed for the analytical determination of the instability region. …

Metapopulation Model For Oyster Restoration, Leah Shaw

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Understanding The Spread Of Black Sigatoka Disease: A Deterministic And Stochastic Modeling Approach, Bernard Asamoah Afful, Luis F. Gordillo

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Global Stability And Bifurcation Analysis Of A Predator-Prey Model Involving Allee Effect And Monod-Haldane Functional Response, Resmawan Resmawan, Agus Suryanto, Isnani Darti, Hasan S. Panigoro

Mathematical Modelling and Numerical Simulation with Applications

In this paper, the complexity of the dynamic behavior of the interaction between prey and predator is studied. The predator-prey relationship involves Allee effects and Monod-Haldane functional response. The constructed model has been shown to have validity in several respects, including the existence and uniqueness of the solution, as well as its non-negativity and boundedness. Three equilibrium points, namely trivial, axial, and coexistence points, are found, including their global dynamics using the Lyapunov function together with the LaSalle's invariance principle. The effect of the predation conversion rate causes changes in the dynamic behavior of predators and prey, which is characterized …

Coarse-Graining Spiking Reservoirs: Reducing Reservoir Size While Preserving Critical Dynamics, Tucker X. Mastin, Christof Teuscher

Northeast Journal of Complex Systems (NEJCS)

We propose an extension of renormalization into the domain of spiking neural networks, thereby providing a novel framework for coarse-graining neural networks without disrupting their critical properties. The proposed coarse-graining technique merges neurons and synaptic connections based on a graph-theoretic distance derived from synaptic weight strength and is configured to effectively prune the reservoir size while preserving the scale-free spiking dynamics indicative of criticality. Criticality in spiking neural networks may provide information-theoretic advantages by optimizing information processing and sensitivity to input. Using time-series prediction benchmarks, we demonstrate that networks operating at criticality exhibit up to 32% higher prediction accuracy before …

Evolutionary Dynamics Of Artificial Agents: Exploration And Learning In Games, Brian Mintz

Dartmouth College Ph.D Dissertations

The natural world abounds with examples of complex behavior in humans and many other species. Evolutionary game theory is a powerful mathematical framework to understand the origins of many such behaviors like cooperation. Since these behaviors are often selected against initially, understanding why they are so widespread has been a longstanding question. Rather than assuming agents' rationality, like in traditional game theory, this approach studies the mutation and selection of strategies themselves. However most behavior is neither perfectly rational nor entirely determined by genetics. This dissertation works to bridge the gap between these two perspectives by analyzing models where individuals …

Dual Quaternions For Gravity Recovery Missions, Ryan Kinzie

Doctoral Dissertations and Master's Theses

A dual quaternion-based modeling, state estimation and control approach is introduced as a better alternative to the traditional methods which are currently utilized for gravity recovery missions. The proposed modeling and control approach was verified against and compared to the tangent bundle to Special Euclidean Group 3 through MATLAB simulations. The dual quaternion-based approach shows superior performance over traditional linearized and uncoupled methodologies, in both modeling accuracy of spacecraft translational position, and the ability to control the pose of a test mass relative to its host spacecraft. Utilizing data products from the Gravity Recovery and Climate Experiment Follow-On mission, a …

Integrating Neural Networks For Predictive Torque Control And Obstacle Avoidance In Autonomous Robot, Viswanath Kodali, Harsha Vardhan Borra, Kiran P

Northeast Journal of Complex Systems (NEJCS)

In the field of robotics, precise motion control and accurate computation of joint forces are critical for ensuring optimal performance. Traditional methods, such as using the Jacobian matrix for joint angle determination and Euler-Lagrange equations for torque computation, are reliable but computationally intensive, making them less suitable for real-time applications. This paper presents an advanced approach to improving the productivity and efficiency of a 3-Degree of Freedom (DOF) robotic arm by utilizing Artificial Neural Network (ANN). The proposed system dynamically predicts joint angles and torque, enabling faster and more efficient motion control.

To address the challenge of obstacle avoidance in …

Wave Reflections In A Biophysically Detailed Model Of Cardiac Tissue, Grace Moberg

Honors Theses

Regular heart rhythms are governed by the coordinated spread of action potentials through cardiac tissue. The interaction of an action potential with a tissue heterogeneity may lead to a reflection, where both a retrograde and an anterograde wave propagate off of the initial impulse. Reflections have been experimentally linked to cardiac arrhythmias, but their mechanisms of generation are not well-understood. Mathematically, reflections in phenomenological models of cardiac tissue have been linked to an unstable periodic orbit. These models typically sacrifice detail about the variety of ionic currents and processes involved in action potential propagation in favor of mathematical simplicity. Biophysically …

Mathematical Modeling Of Lead Climbing Falls, Rosemary Christmas Evans

EWU Masters Thesis Collection

This thesis presents a force-based mathematical model for simulating dynamic falls in lead sport climbing, with an emphasis on physical realism and empirical validation. The system is modeled as a mass–spring–damper, incorporating gravity, nonlinear rope stiffness, internal damping, and Capstan-style friction at protection points. The goal is to predict peak forces and rope elongation while capturing the complex dynamics of real climbing ropes. Several novel features are introduced. Activation switches ensure forces only engage when the rope is tensioned, preventing premature response. A velocity-sensitive stiffness transition function allows the rope to stiffen smoothly with increasing fall speed, reflecting rate-dependent rope …

Dynamics Of Prey-Prey Mutualism With Varying Carrying Capacity And Herd Behavior In The Presence Of Predator, Felix Dela Djokoto

UNF Graduate Theses and Dissertations

This study investigates the dynamics of mutualistic relationships between two prey species in the presence of a predator, by taking into account herding in one species along with the influence of carrying capacities between two prey species. These mutualistic dynamics are presented by constructing two mathematical models, namely an indirect and direct mutualism model. As the strength of the symbiotic relationship increases the indirect model goes through transcritical bifurcation to Hopf bifurcation whereas in the direct mutualism model goes through saddle-node bifurcation to Hopf bifurcation.

Safety And Optimality Monitors For Learning-Enabled Systems Using Conformal Prediction, Jackson Cox

McKelvey School of Engineering Graduate Student Theses & Dissertations

The use of machine learning to create data-driven plant models and controllers has led to an increased need for safety and optimality monitors for model-based systems. System plant models are subject to uncertainty due to learning constraints such as unseen data and overfitting or physical constraints such as unknown dynamics and noise. This uncertainty is detrimental to safety-critical systems and must be properly regulated. To curb this uncertainty, we create prediction sets using the guarantees provided by Conformal Prediction. With a user-specified high probability, these prediction sets contain the true plant system states for an entire prediction horizon, which we …

A Model Of Oocyte Population Dynamics For Fish Oogenesis, Louis Fostier, Frédérique Clément, Romain Yvinec, Violette Thermes

Biology and Medicine Through Mathematics Conference

No abstract provided.

Information Feedback Delays Within Epidemic Models And Their Effect On Model Dynamics., Maria K. Bouka, Christopher Strickland Dr

Biology and Medicine Through Mathematics Conference

No abstract provided.

Exploration Of Characteristic Curve In Fox Float 3 Shock Dampers To Expedite Shock Damp Tuning., Joshua R. Moore

Honors College Theses

The shock absorber is an integral part of a vehicle suspension system and has a strong influence on its performance, especially in the case of motorsports. It is important to study the force versus velocity relationship, commonly known as the characteristic curve of the shock absorber both during compression and rebound. Vendor-supplied characteristics often reflect the behavior of the shock absorber in a particular setting. However, during the installation, the settings inside the shock absorber are adjusted to increase the human comfort level and performance of the vehicle. This may change the characteristic curve of the shock. The available data …

Generation, Dynamics, And Interaction Of Quartic Solitary Waves In Nonlinear Laser Systems, Sabrina Hetzel

Mathematics Theses and Dissertations

Solitons are self-reinforcing localized wave packets that have remarkable stability features that arise from the balanced competition of nonlinear and dispersive effects in the medium. Traditionally, the dominant order of dispersion has been the lowest (second), however in recent years, experimental and theoretical research has shown that high, even order dispersion may lead to novel applications. Here, the focus is on investigating the interplay of dominant quartic (fourth-order) dispersion and the self-phase modulation due to the nonlinear Kerr effect in laser systems. One big factor to consider for experimentalists working in laser systems is the effect of noise on the …

Multiscale Modelling Of Brain Networks And The Analysis Of Dynamic Processes In Neurodegenerative Disorders, Hina Shaheen

Theses and Dissertations (Comprehensive)

The complex nature of the human brain, with its intricate organic structure and multiscale spatio-temporal characteristics ranging from synapses to the entire brain, presents a major obstacle in brain modelling. Capturing this complexity poses a significant challenge for researchers. The complex interplay of coupled multiphysics and biochemical activities within this intricate system shapes the brain's capacity, functioning within a structure-function relationship that necessitates a specific mathematical framework. Advanced mathematical modelling approaches that incorporate the coupling of brain networks and the analysis of dynamic processes are essential for advancing therapeutic strategies aimed at treating neurodegenerative diseases (NDDs), which afflict millions of …

Discontinuous Galerkin Methods For Compressible Miscible Displacements And Applications In Reservoir Simulation, Yue Kang

Dissertations, Master's Theses and Master's Reports

This dissertation contains research on discontinuous Galerkin (DG) methods applied to the system of compressible miscible displacements, which is widely adopted to model surfactant flooding in enhanced oil recovery (EOR) techniques. In most scenarios, DG methods can effectively simulate problems in miscible displacements.
However, if the problem setting is complex, the oscillations in the numerical results can be detrimental, with severe overshoots leading to nonphysical numerical approximations. The first way to address this issue is to apply the bound-preserving
technique. Therefore, we adopt a bound-preserving Discontinuous Galerkin method
with a Second-order Implicit Pressure Explicit Concentration (SIPEC) time marching
method to …

Mathematical Analysis Of Eukaryotic Pericentromere, Puranjan Ghimire

Theses and Dissertations

The centromere is crucial for chromosomal stability and their proper segregation during cell division in eukaryotes. Surrounding the centromere are pericentromeres, made of repetitive DNA elements called pericentromeric repeats, varying from 10 in fission yeast to thousands in humans. These repeats form densely packed heterochromatin, where genes are usually silenced. The silencing mechanism across different pericentromeric repeats remains unclear.

Despite variations in sequence and length, pericentromeric repeats are conserved across eukaryotes, indicating their functional importance. This dissertation presents mathematical models to quantify gene silencing in fission yeast and humans. In fission yeast, my model predicts that silencing occurs only with …

Controlled Manipulation And Transport By Microswimmers In Stokes Flows, Jake Buzhardt

All Dissertations

Remotely actuated microscale swimming robots have the potential to revolutionize many aspects of biomedicine. However, for the longterm goals of this field of research to be achievable, it is necessary to develop modelling, simulation, and control strategies which effectively and efficiently account for not only the motion of individual swimmers, but also the complex interactions of such swimmers with their environment including other nearby swimmers, boundaries, other cargo and passive particles, and the fluid medium itself. The aim of this thesis is to study these problems in simulation from the perspective of controls and dynamical systems, with a particular focus …

Aspects Of Stochastic Geometric Mechanics In Molecular Biophysics, David Frost

All Dissertations

In confocal single-molecule FRET experiments, the joint distribution of FRET efficiency and donor lifetime distribution can reveal underlying molecular conformational dynamics via deviation from their theoretical Forster relationship. This shift is referred to as a dynamic shift. In this study, we investigate the influence of the free energy landscape in protein conformational dynamics on the dynamic shift by simulation of the associated continuum reaction coordinate Langevin dynamics, yielding a deeper understanding of the dynamic and structural information in the joint FRET efficiency and donor lifetime distribution. We develop novel Langevin models for the dye linker dynamics, including rotational dynamics, based …

Utilizing Non-Negative Least Squares For Data-Driven Discovery Of Dynamics, Tracey G. Oellerich

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Effects Of Seasonal Birth And Predation On Disease Spread, Leah Shaw, Allison Introne

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.